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Yorodumi Search

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Showing 1 - 50 of 324 items for (author: yoo & y)


EMDB entry, No image

EMDB-37139:
Structure of SARS-CoV Spike protein complexed with antibody PW5-5


EMDB entry, No image

EMDB-37143:
The local refined map of SARS-CoV-2 XBB Variant Spike protein complexed with antibody PW5-535


EMDB entry, No image

EMDB-37144:
Trimer state of SARS-CoV Spike protein complexed with antibody PW5-535


EMDB entry, No image

EMDB-37145:
The local refined map of SARS-CoV Spike protein complexed with antibody PW5-5


EMDB entry, No image

EMDB-37160:
Monomer state of SARS-CoV-2 XBB Variant Spike protein trimer complexed with antibody PW5-5


EMDB entry, No image

EMDB-37161:
Monomer state of SARS-CoV Spike protein complexed with antibody PW5-535


EMDB entry, No image

EMDB-37162:
Structure of SARS-CoV-2 Omicron BA.1 Spike complexed with antibody PW5-570


EMDB entry, No image

EMDB-37163:
The local refined map of SARS-CoV-2 Omicron BA.1 Spike complexed with antibody PW5-570


EMDB entry, No image

EMDB-37164:
State 1 of SARS-CoV-2 XBB Variant Spike protein trimer complexed with antibody PW5-5


EMDB entry, No image

EMDB-37165:
Structure of SARS-CoV-2 XBB Variant Spike protein complexed with broadly neutralizing antibody PW5-535

PDB-8kdm:
Structure of SARS-CoV Spike protein complexed with antibody PW5-5

PDB-8kdr:
The local refined map of SARS-CoV-2 XBB Variant Spike protein complexed with antibody PW5-535

PDB-8kds:
Trimer state of SARS-CoV Spike protein complexed with antibody PW5-535

PDB-8kdt:
The local refined map of SARS-CoV Spike protein complexed with antibody PW5-5

PDB-8kej:
Monomer state of SARS-CoV-2 XBB Variant Spike protein trimer complexed with antibody PW5-5

PDB-8kek:
Monomer state of SARS-CoV Spike protein complexed with antibody PW5-535

PDB-8keo:
Structure of SARS-CoV-2 Omicron BA.1 Spike complexed with antibody PW5-570

PDB-8kep:
The local refined map of SARS-CoV-2 Omicron BA.1 Spike complexed with antibody PW5-570

PDB-8keq:
State 1 of SARS-CoV-2 XBB Variant Spike protein trimer complexed with antibody PW5-5

PDB-8ker:
Structure of SARS-CoV-2 XBB Variant Spike protein complexed with broadly neutralizing antibody PW5-535

EMDB-44389:
Cryo-EM structure of the ZBTB5 BTB domain filament

EMDB-44391:
Cryo-EM structure of the ZBTB9 BTB domain filament

PDB-9b9r:
Cryo-EM structure of the ZBTB5 BTB domain filament

PDB-9b9v:
Cryo-EM structure of the ZBTB9 BTB domain filament

EMDB-42837:
Cryo-EM structure of GeoCas9 in complex with sgRNA and target DNA

EMDB-42838:
Cryo-EM structure of iGeoCas9 in complex with sgRNA and target DNA

PDB-8uza:
Cryo-EM structure of GeoCas9 in complex with sgRNA and target DNA

PDB-8uzb:
Cryo-EM structure of iGeoCas9 in complex with sgRNA and target DNA

EMDB-42676:
5-HT2AR bound to Lisuride in complex with a mini-Gq protein and an active-state stabilizing single-chain variable fragment (scFv16) obtained by cryo-electron microscopy (cryoEM)

EMDB-42999:
5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking

PDB-8uwl:
5-HT2AR bound to Lisuride in complex with a mini-Gq protein and an active-state stabilizing single-chain variable fragment (scFv16) obtained by cryo-electron microscopy (cryoEM)

PDB-8v6u:
5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking

EMDB-40682:
The cryo-EM structure of the EcBAM/EspP(beta1-12) complex

EMDB-40700:
The cryo-EM structure of the EcBAM/EspP(beta8-12) complex

EMDB-40701:
The cryo-EM structure of the EcBAM/EspP(beta7-12) complex

EMDB-38453:
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein in complex with ACE2 (1-up state)

EMDB-38454:
Structure of the SARS-CoV-2 EG.5.1 spike RBD in complex with ACE2

PDB-8xlm:
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein in complex with ACE2 (1-up state)

PDB-8xln:
Structure of the SARS-CoV-2 EG.5.1 spike RBD in complex with ACE2

EMDB-37648:
SARS-CoV-2 EG.5.1 spike glycoprotein (1-up state)

EMDB-37650:
SARS-CoV-2 EG.5.1 spike glycoprotein (closed-2 state)

EMDB-37651:
SARS-CoV-2 EG.5.1 spike glycoprotein (closed-1 state)

PDB-8wmd:
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein (closed-2 state)

PDB-8wmf:
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein (closed-1 state)

EMDB-43647:
CryoEM structure of Gi-coupled TAS2R14 with cholesterol and an intracellular tastant

EMDB-43650:
CryoEM structure of Ggust-coupled TAS2R14 with cholesterol and an intracellular tastant

EMDB-43656:
CryoEM structure of Gi-coupled TAS2R14 with cholesterol and an intracellular tastant (Locally refined map)

EMDB-43657:
CryoEM structure of Ggust-coupled TAS2R14 with cholesterol and an intracellular tastant (Locally refined map)

PDB-8vy7:
CryoEM structure of Gi-coupled TAS2R14 with cholesterol and an intracellular tastant

PDB-8vy9:
CryoEM structure of Ggust-coupled TAS2R14 with cholesterol and an intracellular tastant

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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Aug 12, 2020. Covid-19 info

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URL: https://pdbjlc1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

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Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

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Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

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