[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,102 items for (author: yang & ry)

EMDB-64397:
Cryo-EM structure of macaque red cone pigment with Q114N mutation
Method: single particle / : Ohashi S, Kojima A, Fukuda M, Kim S, Kato HE, Kandori H, Katayama K

EMDB-64398:
Cryo-EM structure of macaque green cone pigment with Q114N mutation
Method: single particle / : Ohashi S, Kojima A, Fukuda M, Kim S, Kato HE, Kandori H, Katayama K

EMDB-64399:
Cryo-EM structure of macaque green cone pigment wild type
Method: single particle / : Ohashi S, Kojima A, Fukuda M, Kim S, Kato HE, Kandori H, Katayama K

PDB-9upm:
Cryo-EM structure of macaque red cone pigment with Q114N mutation
Method: single particle / : Ohashi S, Kojima A, Fukuda M, Kim S, Kato HE, Kandori H, Katayama K

PDB-9upn:
Cryo-EM structure of macaque green cone pigment with Q114N mutation
Method: single particle / : Ohashi S, Kojima A, Fukuda M, Kim S, Kato HE, Kandori H, Katayama K

PDB-9upo:
Cryo-EM structure of macaque green cone pigment wild type
Method: single particle / : Ohashi S, Kojima A, Fukuda M, Kim S, Kato HE, Kandori H, Katayama K

EMDB-71685:
Cryo-EM structure of human NXPE1
Method: single particle / : Zhang H, Li F, Piper D, Min X

EMDB-72099:
Cryo-EM structure of PPAT-NUDT5 complex bound to adenosine-5'-monophosphate (AMP)
Method: single particle / : Witus SRW, Yang Z, Rape M

EMDB-72100:
Cryo-EM structure of PPAT-NUDT5 complex bound to 6-methylthioinosine-5'-monophosphate (6-meTIMP)
Method: single particle / : Witus SRW, Yang Z, Rape M

EMDB-72101:
Cryo-EM structure of PPAT-NUDT5 complex bound to 6-benzylthioinosine-5'-monophosphate (6-benzylTIMP)
Method: single particle / : Witus SRW, Yang Z, Rape M

EMDB-74561:
Nucleosome with an SSB at SHL -2.8 in complex with the WGR domain of human PARP2, Class 1
Method: single particle / : Kim TH, Jayathilake C, Virk RK, Gregory-Lott ER

EMDB-74562:
Nucleosome with an SSB at SHL -2.8 in complex with the WGR domain of human PARP2, Class 2
Method: single particle / : Kim TH, Jayathilake C, Virk RK, Gregory-Lott ER

EMDB-74563:
Nucleosome with an SSB at SHL -2.8 in complex with human PARP2 and HPF1, Class 1
Method: single particle / : Kim TH, Jayathilake C, Virk RK, Gregory-Lott ER

EMDB-74564:
Nucleosome with an SSB at SHL -2.8 in complex with human PARP2 and HPF1, Class 2
Method: single particle / : Kim TH, Jayathilake C, Virk RK, Gregory-Lott ER

EMDB-75074:
Nucleosome with an SSB at SHL -2.8 in complex with the WGR domain of human PARP2, Class 1, Consensus map
Method: single particle / : Kim TH, Jayathilake C, Virk RK, Gregory-Lott ER

EMDB-75075:
Nucleosome with an SSB at SHL -2.8 in complex with the WGR domain of human PARP2, Class 1, Focused
Method: single particle / : Kim TH, Jayathilake C, Virk RK, Gregory-Lott ER

EMDB-75079:
Nucleosome with an SSB at SHL -2.8 in complex with the WGR domain of human PARP2, Class 2, Consensus map
Method: single particle / : Kim TH, Jayathilake C, Virk RK, Gregory-Lott ER

EMDB-75080:
Nucleosome with an SSB at SHL -2.8 in complex with the WGR domain of human PARP2, Class 2, Focused map
Method: single particle / : Kim TH, Jayathilake C, Virk RK, Gregory-Lott ER

PDB-9zq9:
Nucleosome with an SSB at SHL -2.8 in complex with the WGR domain of human PARP2, Class 1
Method: single particle / : Kim TH, Jayathilake C, Virk RK, Gregory-Lott ER

PDB-9zqa:
Nucleosome with an SSB at SHL -2.8 in complex with the WGR domain of human PARP2, Class 2
Method: single particle / : Kim TH, Jayathilake C, Virk RK, Gregory-Lott ER

PDB-9zqb:
Nucleosome with an SSB at SHL -2.8 in complex with human PARP2 and HPF1, Class 1
Method: single particle / : Kim TH, Jayathilake C, Virk RK, Gregory-Lott ER

PDB-9zqc:
Nucleosome with an SSB at SHL -2.8 in complex with human PARP2 and HPF1, Class 2
Method: single particle / : Kim TH, Jayathilake C, Virk RK, Gregory-Lott ER

EMDB-45484:
Transferrin Binding Protein A in complex with transferrin (iron bound in N lobe only)
Method: single particle / : Dubey S, Noinaj N

EMDB-45730:
Transferrin Binding Protein A in complex with transferrin binding protein B and transferrin (iron bound to N lobe only)
Method: single particle / : Dubey S, Noinaj N

PDB-9cdq:
Transferrin Binding Protein A in complex with transferrin (iron bound in N lobe only)
Method: single particle / : Dubey S, Noinaj N

PDB-9clt:
Transferrin Binding Protein A in complex with transferrin binding protein B and transferrin (iron bound to N lobe only)
Method: single particle / : Dubey S, Noinaj N

EMDB-48638:
Structure of Human SLC33A1 in complex with oxidized glutathione
Method: single particle / : Gad M, Hite RK

PDB-9mun:
Structure of Human SLC33A1 in complex with oxidized glutathione
Method: single particle / : Gad M, Hite RK

EMDB-48699:
Consensus reconstitution of SLC33A1 in complex with a Fv clasp
Method: single particle / : Gad M, Hite RK

EMDB-73406:
Negative stained A. vinelandii NifEN-B' fusion
Method: single particle / : Neumann B, Brandon K, Hu Y, Ribbe MW, Gonen S

EMDB-73407:
Negative stained A. vinelandii NifEN/NifH ADPxAIF4- stabilized complex
Method: single particle / : Neumann B, Brandon K, Hu Y, Ribbe MW, Gonen S

EMDB-73369:
Cryo-EM structure of SARS-CoV-2 nsp10-nsp14 (E191A) in complex with T20P14-B complex, dimeric form
Method: single particle / : Yang Y, Liu C, Liu B

EMDB-73370:
Cryo-EM structure of SARS-CoV-2 nsp10-nsp14 (E191A) in complex with T20P14-B complex, protomer A focused refinement
Method: single particle / : Yang Y, Liu C, Liu B

EMDB-73371:
Cryo-EM structure of SARS-CoV-2 nsp10-nsp14 (E191A) in complex with T20P14-S complex, tetrameric form
Method: single particle / : Yang Y, Liu C, Liu B

EMDB-73372:
Cryo-EM structure of SARS-CoV-2 nsp10-nsp14 (E191A) in complex with T20P14-S complex, monomeric form
Method: single particle / : Yang Y, Liu C, Liu B

PDB-9yrk:
Cryo-EM structure of SARS-CoV-2 nsp10-nsp14 (E191A) in complex with T20P14-B complex, dimeric form
Method: single particle / : Yang Y, Liu C, Liu B

PDB-9yrl:
Cryo-EM structure of SARS-CoV-2 nsp10-nsp14 (E191A) in complex with T20P14-B complex, protomer A focused refinement
Method: single particle / : Yang Y, Liu C, Liu B

PDB-9yrn:
Cryo-EM structure of SARS-CoV-2 nsp10-nsp14 (E191A) in complex with T20P14-S complex, tetrameric form
Method: single particle / : Yang Y, Liu C, Liu B

PDB-9yro:
Cryo-EM structure of SARS-CoV-2 nsp10-nsp14 (E191A) in complex with T20P14-S complex, monomeric form
Method: single particle / : Yang Y, Liu C, Liu B

EMDB-39009:
positive allosteric modulator(BMS986187)-bound delta-opioid receptor-Gi complex
Method: single particle / : Luo P, Xu Y, Wang Y, Zhuang Y, Xu HE

PDB-8y71:
positive allosteric modulator(BMS986187)-bound delta-opioid receptor-Gi complex
Method: single particle / : Luo P, Xu Y, Wang Y, Zhuang Y, Xu HE

EMDB-65801:
Cryo-EM structure of SARS-CoV-2 WT 6p spike protein in complex with P5-1C8 IgG (1.5 IgG)
Method: single particle / : Lv NN, Yang RY

EMDB-65802:
Cryo-EM structure of SARS-CoV-2 WT 6p spike protein in complex with P5-1C8 IgG (1 IgG)
Method: single particle / : Lv NN, Yang RY

EMDB-65803:
Immune complex of P5-1C8 Fab binding the RBD of Omicron JN.1 6p spike protein
Method: single particle / : Lv NN, Yang RY

EMDB-65804:
Immune complex of P5-1C8 Fab binding the RBD of Omicron BA.1 6p spike protein (2 Fab)
Method: single particle / : Lv NN, Yang RY

EMDB-65805:
Immune complex of P5-1C8 Fab binding the RBD of Omicron BA.1 6p spike protein (1 Fab)
Method: single particle / : Lv NN, Yang RY

EMDB-65806:
Immune complex of P5-1C8 IgG binding the RBD of Omicron BA.1 6p spike protein
Method: single particle / : Lv NN, Yang RY

EMDB-65807:
Immune complex of P5-1C8 Fab binding the RBD of SARS-CoV-2 WT 6p spike protein
Method: single particle / : Lv NN, Yang RY

EMDB-65808:
Immune complex of P5-1C8 IgG binding the RBD of SARS-CoV-2 WT 6p spike protein
Method: single particle / : Lv NN, Yang RY

EMDB-62849:
Gi-bound kappa opioid receptor in complex with dynorphin and positive allosteric modulator MPAM-15
Method: single particle / : Zhuang Y, Wang Y, Xu Y, Luo P, Xu HE

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more