[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 61 items for (author: svidritskiy & e)

EMDB-26033:
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

EMDB-26034:
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

EMDB-26035:
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

EMDB-26036:
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

EMDB-26037:
E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

PDB-7too:
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

PDB-7top:
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

PDB-7toq:
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

PDB-7tor:
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

PDB-7tos:
E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

EMDB-22669:
Cryo-EM map of pre-translocation non-frameshifting(CCA-A) complex (Structure I)

EMDB-22670:
Cryo-EM map of mid-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure II)

EMDB-22671:
Cryo-EM map of near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)

EMDB-22672:
Cryo-EM map of pre-translocation +1-frameshifting(CCC-A) complex (Structure I-FS)

EMDB-22673:
Cryo-EM of mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)

EMDB-22674:
Cryo-EM map of near post-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure III-FS)

EMDB-23528:
Cryo-EM of pre-translocation rotated ribosome +1-frameshifting(CCC-A) complex (Structure Irot-FS)

PDB-7k50:
Pre-translocation non-frameshifting(CCA-A) complex (Structure I)

PDB-7k51:
Mid-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure II)

PDB-7k52:
Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)

PDB-7k53:
Pre-translocation +1-frameshifting(CCC-A) complex (Structure I-FS)

PDB-7k54:
Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)

PDB-7k55:
Near post-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure III-FS)

PDB-7lv0:
Pre-translocation rotated ribosome +1-frameshifting(CCC-A) complex (Structure Irot-FS)

EMDB-22459:
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

EMDB-22461:
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

EMDB-22464:
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

EMDB-22465:
70S ribosome stalled on truncated mRNA

EMDB-22466:
70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III)

EMDB-22467:
70S rotated ribosome stalled on truncated mRNA

EMDB-22468:
70S ribosome stalled on long mRNA with ArfB C-terminus bound in the mRNA tunnel

EMDB-22469:
70S ribosome stalled on long mRNA with ArfB bound in the A site

EMDB-22470:
70S ribosome stalled on long mRNA with ArfB bound in the A site (+9-VI)

EMDB-22471:
Rotated 70S ribosome stalled on long mRNA with ArfB-1 bound in the A site (+9-V)

EMDB-22472:
Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)

PDB-7jss:
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

PDB-7jsw:
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

PDB-7jsz:
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

PDB-7jt1:
70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III)

PDB-7jt2:
70S ribosome stalled on long mRNA with ArfB bound in the A site

PDB-7jt3:
Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)

EMDB-20048:
Non-rotated ribosome (Structure I)

EMDB-20052:
70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)

EMDB-20056:
70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).

EMDB-20057:
70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

EMDB-20058:
70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

PDB-6ofx:
Non-rotated ribosome (Structure I)

PDB-6og7:
70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)

PDB-6ogf:
70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).

PDB-6ogg:
70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more