[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,037 items for (author: sun & ye)

EMDB-69143:
Cryo-EM structure of human ABCB7 in complex with CoPP:GSH/ADPVO4
Method: single particle / : Ju S, Choi SH, Lee HY, Jin MS

EMDB-69144:
Cryo-EM structures of the human ABCB7 in the apo state
Method: single particle / : Ju S, Choi SH, Lee HY, Jin MS

EMDB-69145:
Cryo-EM structure of the human ABCB7 in occluded state
Method: single particle / : Ju S, Choi SH, Lee HY, Jin MS

PDB-23pg:
Cryo-EM structure of human ABCB7 in complex with CoPP:GSH/ADPVO4
Method: single particle / : Ju S, Choi SH, Lee HY, Jin MS

PDB-23ph:
Cryo-EM structures of the human ABCB7 in the apo state
Method: single particle / : Ju S, Choi SH, Lee HY, Jin MS

PDB-23pi:
Cryo-EM structure of the human ABCB7 in occluded state
Method: single particle / : Ju S, Choi SH, Lee HY, Jin MS

EMDB-64402:
Cryo-EM strucutre of CXCR4 complexed with agonist SDV1a
Method: single particle / : Jiao HZ, Sang XH, Huang ZW, Hu HL

EMDB-64403:
Cryo-EM structure of CXCR4 complexed with agonist SDVX1
Method: single particle / : Jiao HZ, Sang XH, Huang ZW, Hu HL

PDB-9upu:
Cryo-EM strucutre of CXCR4 complexed with agonist SDV1a
Method: single particle / : Jiao HZ, Sang XH, Huang ZW, Hu HL

PDB-9upv:
Cryo-EM structure of CXCR4 complexed with agonist SDVX1
Method: single particle / : Jiao HZ, Sang XH, Huang ZW, Hu HL

EMDB-64869:
Cryo-EM structure of human TNFR1 DD filament
Method: helical / : Zhao K, Liu JP, Liu C, Yuan JY

EMDB-64870:
Cryo-EM structure of human RIPK1 DD filament
Method: helical / : Zhao K, Liu JP, Liu C, Yuan JY

EMDB-65047:
Helical assembly of TRADD death domain
Method: helical / : Liu J, Han Y

EMDB-65094:
Ternary complex of TNFR1-DD, TRADD-DD and RIPK1-DD
Method: single particle / : Liu J, Han Y, Zhao J, Gao J, Yuan J

PDB-9v9c:
Cryo-EM structure of human TNFR1 DD filament
Method: helical / : Zhao K, Liu JP, Liu C, Yuan JY

PDB-9v9e:
Cryo-EM structure of human RIPK1 DD filament
Method: helical / : Zhao K, Liu JP, Liu C, Yuan JY

PDB-9vgd:
Helical assembly of TRADD death domain
Method: helical / : Liu J, Han Y

PDB-9vin:
Ternary complex of TNFR1-DD, TRADD-DD and RIPK1-DD
Method: single particle / : Liu J, Han Y, Zhao J, Gao J, Yuan J

EMDB-49511:
CH35 V1V2V3 and gp41-base macaque polyclonal Fabs in complex with Q23-APEX-GT2 trimer
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-49512:
CH35 gp41-FP macaque polyclonal Fab in complex with Q23-APEX-GT2 trimer
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-49513:
CH70 gp41-GH macaque polyclonal Fab in complex with Q23-APEX-GT2 trimer
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-49865:
Cryo-EM structure of V2 apex germline-targeting HIV Env trimer Q23-APEX-GT2
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-49866:
Cryo-EM structure of rhesus antibody CH35-Apex1.08 in complex with HIV Env trimer Q23-APEX-GT2
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-49867:
Cryo-EM structure of rhesus antibody CI91-Apex1.01 in complex with HIV Env trimer Q23-APEX-GT2
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-49868:
Cryo-EM structure of rhesus antibody CH70-Apex2.01 in complex with HIV Env trimer Q23-APEX-GT2
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-49869:
Cryo-EM structure of rhesus antibody CH70-Apex1.01 in complex with HIV Env trimer Q23-APEX-GT2
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-49870:
Cryo-EM structure of rhesus antibody CH42-Apex1.01 in complex with HIV Env trimer Q23-APEX-GT2
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-49871:
Cryo-EM structure of rhesus antibody CH42-Apex2.01 in complex with HIV Env trimer Q23-APEX-GT2
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9nvv:
Cryo-EM structure of V2 apex germline-targeting HIV Env trimer Q23-APEX-GT2
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9nvw:
Cryo-EM structure of rhesus antibody CH35-Apex1.08 in complex with HIV Env trimer Q23-APEX-GT2
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9nvx:
Cryo-EM structure of rhesus antibody CI91-Apex1.01 in complex with HIV Env trimer Q23-APEX-GT2
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9nvy:
Cryo-EM structure of rhesus antibody CH70-Apex2.01 in complex with HIV Env trimer Q23-APEX-GT2
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9nvz:
Cryo-EM structure of rhesus antibody CH70-Apex1.01 in complex with HIV Env trimer Q23-APEX-GT2
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9nw0:
Cryo-EM structure of rhesus antibody CH42-Apex1.01 in complex with HIV Env trimer Q23-APEX-GT2
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9nw1:
Cryo-EM structure of rhesus antibody CH42-Apex2.01 in complex with HIV Env trimer Q23-APEX-GT2
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9uje:
Cryo-EM structure of SARS-CoV2 KP.3.1.1 spike protein
Method: single particle / : He MZ

EMDB-63722:
Cryo-EM structure of human SIDT1
Method: single particle / : Liao L, Sun L

EMDB-52841:
PhiC31 S12A dimer on attB sites
Method: single particle / : Spagnolo L, Sun YE, Joseph AP

EMDB-56518:
PhiC31 integrase-attB-attP synaptic complex: attB-bound dimer subregion
Method: single particle / : Sun YE, Spagnolo L

EMDB-52811:
PhiC31 integrative synapse: attB x attP with an S12A integrase variant
Method: single particle / : Spagnolo L, Sun YE, Aspinall L

EMDB-52845:
PhiC31 integrative synapse: CC dimer subregion
Method: single particle / : Sun YE, Spagnolo L

EMDB-53874:
PhiC31 integrase-attL complex: B-bound subregion
Method: single particle / : Spagnolo L, Sun YE, Joseph AP

EMDB-53875:
PhiC31 integrase-attL complex: P'-bound subregion
Method: single particle / : Sun YE, Spagnolo L, Joseph AP

EMDB-53878:
Autoinhibited PhiC31 integrase-attL complex
Method: single particle / : Sun YE, Spagnolo L, Aspinall L

EMDB-55829:
PhiC31 excisive synapse; attL x attL with an integraseS12A-RDF protein fusion
Method: single particle / : Sun YE, Spagnolo L

EMDB-55830:
PhiC31 excisive synapse: B-bound subregion
Method: single particle / : Sun YE, Spagnolo L

EMDB-55831:
PhiC31 excisive synapse: P'-bound subregion
Method: single particle / : Sun YE, Spagnolo L

EMDB-55832:
PhiC31 integraseS12A-attB-RDF complex
Method: single particle / : Sun YE, Spagnolo L

EMDB-55833:
PhiC31 integraseS12A-attB-RDF complex: B-bound subregion
Method: single particle / : Sun YE, Spagnolo L

EMDB-55834:
PhiC31 integraseS12A-attB-RDF complex: B'-bound subregion
Method: single particle / : Sun YE, Spagnolo L

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more