[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 10,983 items for (author: shi & l)

EMDB-66042:
Open State of Apo-P-Glycoprotein
Method: single particle / : Hamaguchi-Suzuki N, Kanaoka Y, Ogasawara S, Murata T, Uchihashi T

EMDB-66043:
Closed State of Apo-P-Glycoprotein.
Method: single particle / : Hamaguchi-Suzuki N, Kanaoka Y, Ogasawara S, Murata T, Uchihashi T

EMDB-64791:
CryoEM structure of human DNMT1 (aa 698-1616) in complex with hemimethylated dsDNA and inhibitor DMT207
Method: single particle / : Li Z

PDB-9v5p:
Human DNMT1 (aa 698-1616) in complex with hemimethylated dsDNA and inhibitor DMT207
Method: single particle / : Li Z

EMDB-70069:
CryoEM structure of mu-opioid receptor - Gi protein complex bound to FNZ, Global Map
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70070:
CryoEM structure of mu-opioid receptor - Gi protein complex bound to FNZ- local map
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-64920:
Cryo-EM structure of CARD1 ectodomain
Method: single particle / : Fukuda Y, Ishihama N, Laohavisit A

EMDB-64934:
Cryo-EM structure of a CARD1 ectodomain H197A/H199A/H222A mutant
Method: single particle / : Fukuda Y, Ishihama N, Laohavisit A

PDB-9vbd:
Cryo-EM structure of CARD1 ectodomain
Method: single particle / : Fukuda Y, Ishihama N, Laohavisit A

PDB-9vbv:
Cryo-EM structure of a CARD1 ectodomain H197A/H199A/H222A mutant
Method: single particle / : Fukuda Y, Ishihama N, Laohavisit A

EMDB-64153:
PSI-9 FCPI supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Tsai PC, Kato K, Nakajima Y, Akita F, Shen JR

EMDB-64154:
PSI-4 FCPI supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Tsai PC, Kato K, Nakajima Y, Akita F, Shen JR

EMDB-64362:
PSI-1 FCPI supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Tsai PC, Kato K, Nakajima Y, Akita F, Shen JR

EMDB-64378:
PSI-6 FCPI supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Tsai PC, Kato K, Nakajima Y, Akita F, Shen JR

EMDB-64383:
PSI-8 FCPI supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Tsai PC, Kato K, Nakajima Y, Akita F, Shen JR

PDB-9uh3:
PSI-9 FCPI supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Tsai PC, Kato K, Nakajima Y, Akita F, Shen JR

PDB-9uh4:
PSI-4 FCPI supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Tsai PC, Kato K, Nakajima Y, Akita F, Shen JR

PDB-9unu:
PSI-1 FCPI supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Tsai PC, Kato K, Nakajima Y, Akita F, Shen JR

PDB-9uof:
PSI-6 FCPI supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Tsai PC, Kato K, Nakajima Y, Akita F, Shen JR

PDB-9uov:
PSI-8 FCPI supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Tsai PC, Kato K, Nakajima Y, Akita F, Shen JR

EMDB-68666:
Human 80S ribosome in complex with DHX29
Method: single particle / : Goto-Ito S, Iwasaki W, Ito T

PDB-22tu:
Human 80S ribosome in complex with DHX29
Method: single particle / : Goto-Ito S, Iwasaki W, Ito T

EMDB-64755:
Nav1.5 in complex with quinidine-azo
Method: single particle / : Huang Z, Li Z, Liu S

PDB-9v3s:
Nav1.5 in complex with quinidine-azo
Method: single particle / : Huang Z, Li Z, Liu S

EMDB-70071:
CryoEM structure of mu-opioid receptor - Gi protein complex bound to fluornitrazene (FNZ)
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-72906:
Structure of GPR61 bound to inverse agonist compound 15
Method: single particle / : Lees JA, Dias JM, Han S

PDB-9yfu:
Structure of GPR61 bound to inverse agonist compound 15
Method: single particle / : Lees JA, Dias JM, Han S

EMDB-64335:
mouse PDCD5-TRiC complex
Method: single particle / : Song QQ, Cong Y

EMDB-64363:
mouse PDCD5-TRiC complex
Method: single particle / : Song QQ, Cong Y

EMDB-64365:
mouse PDCD5-TRiC complex
Method: single particle / : Song QQ, Cong Y

EMDB-64367:
mouse PDCD5-TRiC complex
Method: single particle / : Song QQ, Cong Y

PDB-9unw:
mouse PDCD5-TRiC complex
Method: single particle / : Song QQ, Cong Y

PDB-9uje:
Cryo-EM structure of SARS-CoV2 KP.3.1.1 spike protein
Method: single particle / : He MZ

EMDB-63920:
Cryo-EM structure of the Vo domain of V/A-ATPase in liposomes under no pmf condition,state2
Method: single particle / : Nakano A, Kishikawa J, Nishida Y, Shigematsu H, Gerle C, Mitsuoka M, Yokoyama K

EMDB-63921:
Cryo-EM structure of the Vo domain of V/A-ATPase in liposomes under no pmf condition,state3
Method: single particle / : Nakano A, Kishikawa J, Nishida Y, Shigematsu H, Gerle C, Mitsuoka M, Yokoyama K

PDB-9u6r:
Cryo-EM structure of the Vo domain of V/A-ATPase in liposomes under no pmf condition,state2
Method: single particle / : Nakano A, Kishikawa J, Nishida Y, Shigematsu H, Gerle C, Mitsuoka M, Yokoyama K

PDB-9u6s:
Cryo-EM structure of the Vo domain of V/A-ATPase in liposomes under no pmf condition,state3
Method: single particle / : Nakano A, Kishikawa J, Nishida Y, Shigematsu H, Gerle C, Mitsuoka M, Yokoyama K

EMDB-72281:
Human Serum Albumin in complex with four nanobodies: N33, nb139 & nb104
Method: single particle / : Hang W, Sang Z, Xiang YF, Taylor DJ, Shi Y

PDB-9q6y:
Human Serum Albumin in complex with four nanobodies: N33, nb139 & nb104
Method: single particle / : Hang W, Sang Z, Xiang YF, Taylor DJ, Shi Y

EMDB-72279:
Human Serum Albumin in complex with four nanobodies: nb118, nb68, N30 & N23
Method: single particle / : Hang W, Sang Z, Xiang YF, Taylor DJ, Shi Y

PDB-9q6n:
Human Serum Albumin in complex with four nanobodies: nb118, nb68, N30 & N23
Method: single particle / : Hang W, Sang Z, Xiang YF, Taylor DJ, Shi Y

EMDB-72282:
Human Serum Albumin in complex with four nanobodies: N33, nb139, nb39 & nb104
Method: single particle / : Hang W, Sang Z, Xiang YF, Taylor DJ, Shi Y

PDB-9q6z:
Human Serum Albumin in complex with four nanobodies: N33, nb139, nb39 & nb104
Method: single particle / : Hang W, Sang Z, Xiang YF, Taylor DJ, Shi Y

EMDB-72278:
Human Serum Albumin in complex with four nanobodies: nb33, nb77, nb125 & N42
Method: single particle / : Hang W, Sang Z, Xiang YF, Taylor DJ, Shi Y

PDB-9q6h:
Human Serum Albumin in complex with four nanobodies: nb33, nb77, nb125 & N42
Method: single particle / : Hang W, Sang Z, Xiang YF, Taylor DJ, Shi Y

EMDB-55771:
Hepatitis A Virus in Complex with LDLR Receptor
Method: single particle / : Zhao Y, Stuart D, Lemon SM, Duyvesteyn H, Shah P, Fry E

EMDB-55772:
Hepatitis A Virus in complex with GD1a
Method: single particle / : Zhao Y, Stuart D, Lemon SM, Duyvesteyn H, Shah P, Fry E

PDB-9tbh:
Hepatitis A Virus in Complex with LDLR Receptor
Method: single particle / : Zhao Y, Stuart D, Lemon SM, Duyvesteyn H, Shah P, Fry E

PDB-9tbi:
Hepatitis A Virus in complex with GD1a
Method: single particle / : Zhao Y, Stuart D, Lemon SM, Duyvesteyn H, Shah P, Fry E

EMDB-73228:
Local refinement of Fab-14/SARS-CoV-2 D614G spike complex, Mode I
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more