[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 105 items for (author: rabi & fa)

EMDB-70677:
Cryo-EM structure of Candida albicans fluoride channel FEX in complex with Fab fragment
Method: single particle / : Kang CY, An MJ, Ohi MD, Stockbridge RB

PDB-9op1:
Cryo-EM structure of Candida albicans fluoride channel FEX in complex with Fab fragment
Method: single particle / : Kang CY, An MJ, Ohi MD, Stockbridge RB

EMDB-70663:
Cryo-EM structure of vaccine-elicited antibody T3_NB_G05 in complex with HIV Env trimer Q23-APEX-GT1.N187S
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-70666:
Cryo-EM structure of vaccine-elicited antibody T6_P_H03 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9oog:
Cryo-EM structure of vaccine-elicited antibody T3_NB_G05 in complex with HIV Env trimer Q23-APEX-GT1.N187S
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9oom:
Cryo-EM structure of vaccine-elicited antibody T6_P_H03 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-70664:
Cryo-EM structure of vaccine-elicited antibody T3_QB_G12 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9ook:
Cryo-EM structure of vaccine-elicited antibody T3_QB_G12 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-70613:
Cryo-EM structure of rhesus antibody V033-Int1 in complex with HIV Env trimer Q23.17 MD39
Method: single particle / : Roark RS, Shapiro L, Kwong PD

PDB-9omg:
Cryo-EM structure of rhesus antibody V033-a.I1 in complex with HIV Env trimer Q23.17 MD39
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-18313:
Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment)
Method: single particle / : Carabias del Rey A, Montoya G

EMDB-18314:
Retron-Eco1 filament with inactive effector (E106A, 2 segments)
Method: single particle / : Carabias del Rey A, Montoya G

EMDB-18315:
Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments)
Method: single particle / : Carabias del Rey A, Montoya G

EMDB-18317:
Retron-Eco1 filament (2 segments)
Method: single particle / : Carabias del Rey A, Montoya G

EMDB-19792:
Retron-Eco1 -1 turn mutant filament with ADP-ribosylated Effector (Consensus refinement)
Method: single particle / : Carabias del Rey A, Montoya G, Pape T

EMDB-19793:
Retron-Eco1 filament with ADP-ribosylated Effector (Consensus refinement)
Method: single particle / : Carabias del Rey A, Montoya G

PDB-8qbk:
Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment)
Method: single particle / : Carabias del Rey A, Montoya G

PDB-8qbl:
Retron-Eco1 filament with inactive effector (E106A, 2 segments)
Method: single particle / : Carabias del Rey A, Montoya G

PDB-8qbm:
Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments)
Method: single particle / : Carabias del Rey A, Montoya G

EMDB-17924:
Cryo-EM structure of human Elp123 in complex with tRNA, acetyl-CoA, 5'-deoxyadenosine and methionine
Method: single particle / : Abbassi N, Jaciuk M, Lin TY, Glatt S

EMDB-17925:
Cryo-EM structure of human Elp123 in complex with 5'-deoxyadenosine and methionine
Method: single particle / : Abbassi N, Jaciuk M, Lin TY, Glatt S

EMDB-17926:
Cryo-EM structure of human Elp123 in complex with tRNA, S-ethyl-CoA, 5'-deoxyadenosine and methionine
Method: single particle / : Abbassi N, Jaciuk M, Lin TY, Glatt S

EMDB-17927:
Cryo-EM structure of human Elp123 in complex with tRNA, desulpho-CoA, 5'-deoxyadenosine and methionine
Method: single particle / : Abbassi N, Jaciuk M, Lin TY, Glatt S

PDB-8ptx:
Cryo-EM structure of human Elp123 in complex with tRNA, acetyl-CoA, 5'-deoxyadenosine and methionine
Method: single particle / : Abbassi N, Jaciuk M, Lin TY, Glatt S

PDB-8pty:
Cryo-EM structure of human Elp123 in complex with 5'-deoxyadenosine and methionine
Method: single particle / : Abbassi N, Jaciuk M, Lin TY, Glatt S

PDB-8ptz:
Cryo-EM structure of human Elp123 in complex with tRNA, S-ethyl-CoA, 5'-deoxyadenosine and methionine
Method: single particle / : Abbassi N, Jaciuk M, Lin TY, Glatt S

PDB-8pu0:
Cryo-EM structure of human Elp123 in complex with tRNA, desulpho-CoA, 5'-deoxyadenosine and methionine
Method: single particle / : Abbassi N, Jaciuk M, Lin TY, Glatt S

EMDB-25621:
The Envelope Glycoprotein SIVmac239.K180S SOSIP trimer in complex with 3 copies of the neutralizing antibody K11
Method: single particle / : Berndsen ZT, Ward AB

EMDB-25623:
SIVmac239.K180S SOSIP in complex with FZ019.2 Fab
Method: single particle / : Berndsen ZT

EMDB-25624:
SIVmac239.K180S SOSIP in complex with FZ012.7 Fab
Method: single particle / : Berndsen ZT, Lee W

EMDB-25625:
SIVmac239.K180S SOSIP in complex with an unknown Fab from the polyclonal serum of the SIV-infected Rhesus Macaque Rh33519
Method: single particle / : Berndsen ZT, Lee W

EMDB-25626:
SIVmac239.K180S SOSIP in complex with an unknown Fab from the polyclonal serum of the SIV-infected Rhesus Macaque Rh31186
Method: single particle / : Berndsen ZT, Lee W

EMDB-25627:
SIVmac239.K180S SOSIP in complex with an unknown Fab from the polyclonal serum of the SIV-infected Rhesus Macaque Rh34620
Method: single particle / : Berndsen ZT, Lee W

EMDB-25628:
SIVmac239.K180S SOSIP in complex with an unknown Fab from the polyclonal serum of the SIV-infected Rhesus Macaque r11008
Method: single particle / : Berndsen ZT, Lee W

EMDB-25629:
SIVmac239.K180S SOSIP in complex with an unknown Fab from the polyclonal serum of the SIV-infected Rhesus Macaque r11008
Method: single particle / : Berndsen ZT, Lee W

EMDB-25630:
SIVmac239.K180S SOSIP in complex with an unknown Fab from the polyclonal serum of the SIV-infected Rhesus Macaque r11002
Method: single particle / : Berndsen ZT, Lee W

EMDB-25631:
SIVmac239.K180S SOSIP in complex with an unknown Fab from the polyclonal serum of the SIV-infected Rhesus Macaque r11004
Method: single particle / : Berndsen ZT, Lee W

EMDB-25632:
SIVmac239.K180S SOSIP in complex with an unknown Fab from the polyclonal serum of the SIV-infected Rhesus Macaque r11004
Method: single particle / : Berndsen ZT, Lee W

EMDB-25676:
The Envelope Glycoprotein SIVmac239.K180S SOSIP trimer in complex with 3 copies of the neutralizing antibody K11
Method: single particle / : Berndsen ZT, Ward AB

PDB-7t2p:
The Envelope Glycoprotein SIVmac239.K180S SOSIP trimer in complex with 3 copies of the neutralizing antibody K11
Method: single particle / : Berndsen ZT, Ward AB

PDB-7t4g:
The Envelope Glycoprotein SIVmac239.K180S SOSIP trimer in complex with 3 copies of the neutralizing antibody K11
Method: single particle / : Berndsen ZT, Ward AB

EMDB-24693:
SARS-CoV-2-6P-Mut7 S protein (C3 symmetry)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

EMDB-24694:
SARS-CoV-2-6P-Mut7 S protein (asymmetric)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

EMDB-24695:
CC6.33 IgG in complex with SARS-CoV-2-6P-Mut7 S protein (non-uniform refinement)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

EMDB-24696:
CC6.33 IgG in complex with SARS-CoV-2-6P-Mut7 S protein (RBD/Fv local refinement)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

EMDB-24697:
CC6.30 fragment antigen binding in complex with SARS-CoV-2-6P-Mut7 S protein (non-uniform refinement)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

EMDB-24699:
CC6.30 fragment antigen binding in complex with SARS-CoV-2-6P-Mut7 S protein (RBD/Fv local refinement)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

PDB-7ru1:
SARS-CoV-2-6P-Mut7 S protein (C3 symmetry)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

PDB-7ru2:
SARS-CoV-2-6P-Mut7 S protein (asymmetric)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

PDB-7ru3:
CC6.33 IgG in complex with SARS-CoV-2-6P-Mut7 S protein (non-uniform refinement)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more