[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 3,745 items for (author: peng & r)

EMDB-64791:
CryoEM structure of human DNMT1 (aa 698-1616) in complex with hemimethylated dsDNA and inhibitor DMT207
Method: single particle / : Li Z

PDB-9v5p:
Human DNMT1 (aa 698-1616) in complex with hemimethylated dsDNA and inhibitor DMT207
Method: single particle / : Li Z

EMDB-64823:
PSI-LHCE supercomplex from Euglena gracilis
Method: single particle / : Bai TY, Mao ZY, Tian LR

EMDB-64824:
PSI-LHCE supercomplex from Euglena gracilis.
Method: single particle / : Bai TY, Mao ZY, Tian LR

PDB-9v7t:
PSI-LHCE supercomplex from Euglena gracilis.
Method: single particle / : Bai TY, Mao ZY, Tian LR

PDB-9v7u:
PSI-LHCE supercomplex from Euglena gracilis.
Method: single particle / : Bai TY, Mao ZY, Tian LR

EMDB-65950:
The structure of phycobilisome with a bicylindrical core from the cyanobacterium Synechococcus elongatus PCC 7942
Method: single particle / : Zheng ZG, Ma CY, Wang HR, Wang GP, Dong CX, Gao N, Zhao JD

EMDB-66291:
The cryo-EM structure of PBS rod from synechococous elongatus PCC 7942
Method: single particle / : Zheng ZG, Ma CY, Wang HR, Wang GP, Dong CX, Gao N, Zhao JD

EMDB-66294:
The cryo-EM structure of PBS core from Synechococcus elongatus PCC 7942
Method: single particle / : Zheng ZG, Ma CY, Wang HR, Wang GP, Dong CX, Gao N, Zhao JD

EMDB-66296:
The cryo-EM structure of PBS from Synechococcus elongatus PCC 7942
Method: single particle / : Zheng ZG, Ma CY, Wang HR, Wang GP, Dong CX, Gao N, Zhao JD

EMDB-66300:
The structure of phycobilisome rod from Synechococcus elongatus PCC 7942
Method: single particle / : Zheng ZG, Ma CY, Wang HR, Wang GP, Dong CX, Gao N, Zhao JD

EMDB-66303:
The cryo-EM structure of PBS core from Synechococcus elongatus PCC 7942
Method: single particle / : Zheng ZG, Ma CY, Wang HR, Wang GP, Dong CX, Gao N, Zhao JD

EMDB-66304:
The cryo-EM structure of PBS from Synechococcus elongatus PCC 7942
Method: single particle / : Zheng ZG, Ma CY, Wang HR, Wang GP, Dong CX, Gao N, Zhao JD

PDB-9wg7:
The structure of phycobilisome with a bicylindrical core from the cyanobacterium Synechococcus elongatus PCC 7942
Method: single particle / : Zheng ZG, Ma CY, Wang HR, Wang GP, Dong CX, Gao N, Zhao JD

PDB-9x69:
The structure of phycobilisome with a bicylindrical core from the cyanobacterium Synechococcus elongatus PCC 7942
Method: single particle / : Zheng ZG, Ma CY, Wang HR, Wang GP, Dong CX, Gao N, Zhao JD

PDB-9x6d:
The cryo-EM structure of phycobilisome rod from Synechococcus elongatus PCC 7942
Method: single particle / : Zheng ZG, Ma CY, Wang HR, Wang GP, Dong CX, Gao N, Zhao JD

EMDB-73365:
p97Ufd1-Npl4 complex processing poly-ubiquitinated substrate in the presence of ATP
Method: single particle / : Li H, Rapoport T

EMDB-73375:
Global refinement map of p97Ufd1-Npl4 complex processing poly-ubiquitinated substrate in the presence of ATP
Method: single particle / : Li H, Rapoport T

EMDB-73376:
Local refinement map of p97Ufd1-Npl4 complex processing poly-ubiquitinated substrate in the presence of ATP, focused on p97 D1 ring and Npl4
Method: single particle / : Li H, Rapoport T

PDB-9yrc:
p97Ufd1-Npl4 complex processing poly-ubiquitinated substrate in the presence of ATP
Method: single particle / : Li H, Rapoport T

PDB-9uje:
Cryo-EM structure of SARS-CoV2 KP.3.1.1 spike protein
Method: single particle / : He MZ

EMDB-62786:
Cryo-EM structure of SARS-CoV-2 BA.2.75 Spike Protein complex with a potent broad-spectrum macrocyclic peptide inhibitor 6L3-3P11K
Method: single particle / : Wang M, Yang JY, Peng Q, Shi Y

EMDB-62788:
Cryo-EM structure of SARS-CoV-2 PT Spike Protein complex with a potent broad-spectrum macrocyclic peptide inhibitor 6L3-3P11K
Method: single particle / : Wang M, Yang JY, Peng Q, Shi Y

EMDB-67440:
Cryo-EM map of SARS-CoV-2 BA.2.75 Spike Protein complex with macrocyclic peptide 6L3 (All RBDs up)
Method: single particle / : Wang M, Peng Q, Yang JY, Shi Y

EMDB-67548:
Cryo-EM map of SARS-CoV-2 BA.2.75 Spike Protein complex with a macrocyclic peptide 6L3-3P11K (Two RBDs up)
Method: single particle / : Wang M, Peng Q, Yang JY, Shi Y

EMDB-67549:
Cryo-EM map of SARS-CoV-2 PT Spike Protein,Three RBDs down
Method: single particle / : Wang M, Peng Q, Yang JY, Shi Y

EMDB-67568:
Cryo-EM map of SARS-CoV-2 BA.2.75 Spike Protein (Three RBDs down)
Method: single particle / : Wang M, Peng Q, Yang JY, Luo H, Shi Y

PDB-9l3i:
Cryo-EM structure of SARS-CoV-2 BA.2.75 Spike Protein complex with a potent broad-spectrum macrocyclic peptide inhibitor 6L3-3P11K
Method: single particle / : Wang M, Yang JY, Peng Q, Shi Y

PDB-9l3q:
Cryo-EM structure of SARS-CoV-2 PT Spike Protein complex with a potent broad-spectrum macrocyclic peptide inhibitor 6L3-3P11K
Method: single particle / : Wang M, Yang JY, Peng Q, Shi Y

EMDB-63769:
the complex of D14 and RGSV P3
Method: single particle / : Huang YC

PDB-9mb8:
the complex of D14 and RGSV P3
Method: single particle / : Huang YC

EMDB-64277:
native GluN1/N2B receptor in the fully open state
Method: single particle / : Yu J, Ge JP, Chen JH

EMDB-64278:
native GluN1/N2B receptor in the open state TMD focused map
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64279:
native GluN1/N2A/N2B-s1 consensus map in the closed state
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64280:
native GluN1/N2A/N2B-s1-TMD focused map in the closed state
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64281:
native GluN1/N2A/N2B-subtype2 consensus map in the closed state
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64283:
native GluN1/N2A/N2B-S2-TMD focused map in the closed state
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64284:
native GluN1/N2A-subtype 1-TMD focused
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64285:
native GluN1/N2B-subtype1 in closed state
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64289:
native GluN1/N2A-subtype2-consensus map
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64290:
native GluN1/N2A-subtype2-TMD focused map
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64292:
native GluN1/N2A-S3-consensus map in the closed state
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64294:
native GluN1/N2A-S3 TMD focused map in the closed state
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64295:
native GluN1/N2B receptor consensus map in the closed state
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64296:
native GluN1/N2B-TMD-focused map in the closed state
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64297:
native GluN1/N2B/NX-consensus map in the closed state
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64298:
native GluN1/N2A/NX-TMD-focused map in the closed state
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64299:
native GluN1/N2B/NX composite map in the closed state
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64300:
native GluN1_N2A_NX_subtype-consensus map in the closed state
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64301:
native GluN1_N2A_NX_subtype1_TMD_focused map in the closed state
Method: single particle / : Yu J, Xu RS, Ge JP

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more