[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 19 items for (author: matyskiela & me)

EMDB-72086:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BCL6-760 (LDD, local refined)
Method: single particle / : Zhu J, Fang W, Pagarigan B

PDB-9q03:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BCL6-760 (LDD, local refined)
Method: single particle / : Zhu J, Fang W, Pagarigan B

EMDB-27012:
Cereblon-DDB1 in the Apo form
Method: single particle / : Watson ER, Lander GC

EMDB-27234:
Cereblon~DDB1 bound to CC-92480 with DDB1 in the linear conformation
Method: single particle / : Watson ER, Lander GC

EMDB-27235:
Cereblon~DDB1 bound to CC-92480 with DDB1 in the twisted conformation
Method: single particle / : Watson ER, Lander GC

EMDB-27236:
Cereblon~DDB1 bound to CC-92480 with DDB1 in the hinged conformation
Method: single particle / : Watson ER, Lander GC

EMDB-27237:
Cereblon~DDB1 in the Apo form with DDB1 in the hinged conformation
Method: single particle / : Watson ER, Lander GC

EMDB-27238:
Cereblon-DDB1 in the Apo form with DDB1 in the twisted conformation
Method: single particle / : Watson ER, Lander GC

EMDB-27239:
Cereblon bound to CC-92480, Focused Refinement
Method: single particle / : Watson ER, Lander GC

EMDB-27240:
Cereblon-DDB1 bound to CC-92480 and Ikaros ZF1-2-3
Method: single particle / : Watson ER, Lander GC

EMDB-27241:
Cereblon~DDB1 bound to Iberdomide and Ikaros ZF1-2-3
Method: single particle / : Watson ER, Lander GC

EMDB-27242:
Cereblon~DDB1 bound to Pomalidomide
Method: single particle / : Watson ER, Lander GC

EMDB-2995:
Negative stain 3D reconstruction of the yeast 26S proteasome in complex with ubiquitin-bound Ubp6
Method: single particle / : Bashore C, Dambacher CM, Matyskiela M, Lander GC, Martin A

EMDB-6334:
Negative stain 3D reconstruction of the yeast 26S proteasome in ATPgS in the presence of wild-type Ubp6 protein
Method: single particle / : Bashore C, Dambacher CM, Matyskiela M, Lander GC, Martin A

EMDB-5668:
26S proteasome Rpn11AXA Rpn13-delta mutant
Method: single particle / : Matyskiela ME, Lander GC, Martin A

EMDB-5669:
Substrate-bound 26S proteasome Rpn11AXA Rpn13-delta mutant
Method: single particle / : Matyskiela ME, Lander GC, Martin A

EMDB-1992:
The Saccharomyces cerevisiae 26S proteasome at subnanometer resolution
Method: single particle / : Lander GC, Estrin E, Matyskiela M, Bashore C, Nogales E, Martin A

EMDB-1993:
Negative stain reconstruction of recombinantly expressed yeast proteasome lid
Method: single particle / : Lander GC, Estrin E, Matyskiela M, Bashore C, Nogales E, Martin A

EMDB-1994:
Negative stain reconstruction of the Saccharomyces cerevisiae proteasome lid
Method: single particle / : Lander GC, Estrin E, Matyskiela M, Bashore C, Nogales E, Martin A

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more