[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 628 items for (author: martinez & c)

EMDB-54266:
WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-54267:
RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-54268:
RPS26dC HEK mutant 80S ribosome bound to TISU mRNA (RPS26dC-TISU)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

PDB-9ru8:
WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

PDB-9ru9:
RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

PDB-9rua:
RPS26dC HEK mutant 80S ribosome bound to TISU mRNA (RPS26dC-TISU)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-54265:
WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-54269:
WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

PDB-9ru7:
WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

PDB-9ruc:
WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-54650:
Unliganded dimer - bacterial
Method: single particle / : Di Domenico V, Mastrella L, Alcaide-Jimenez A, Villegas-Ruiz JC, D'Angelo C, Cifuente JO, Connell SR, Guerin ME

EMDB-54651:
Unliganded tetramer of Glycogen phosphorylase from E. coli
Method: single particle / : Di Domenico V, Mastrella L, Alcaide-Jimenez A, Villegas-Ruiz JC, D'Angelo C, Cifuente JO, Connell SR, Guerin ME

EMDB-54658:
Complexed dimer - bacterial
Method: single particle / : Di Domenico V, Mastrella L, Alcaide-Jimenez A, Villegas-Ruiz JC, D'Angelo C, Cifuente JO, Connell SR, Guerin ME

EMDB-54663:
Complexed tetramer - bacterial
Method: single particle / : Di Domenico V, Mastrella L, Alcaide-Jimenez A, Villegas-Ruiz JC, D'Angelo C, Cifuente JO, Connell SR, Guerin ME

EMDB-49835:
SARS-CoV-2 BA.1 S6P (HexaPro) + COV2-3835 Fab Local Refinement Map (RBD + Fv)
Method: single particle / : Ramamohan AR, Johnson NV, McLellan JS

PDB-9nvg:
Structure of SARS-CoV-2 BA.1 spike RBD bound to COV2-3835 Fab
Method: single particle / : Ramamohan AR, Johnson NV, McLellan JS

EMDB-71751:
Cryo-ET reconstruction of a regenerating axon after axotomy showing branching microtubules (primary mouse thalamus neuronal explant, control)
Method: electron tomography / : Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

EMDB-71752:
Cryo-ET reconstruction of a regenerating axon after axotomy showing branching microtubules (primary mouse thalamus neuronal explant)
Method: electron tomography / : Taira K, Bodakuntla S, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

EMDB-71753:
Cryo-ET reconstruction of a regenerating axon after axotomy showing polymerizing microtubules (primary mouse thalamus neuronal explant)
Method: electron tomography / : Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

EMDB-71754:
Cryo-ET reconstruction of a regenerating axon 24 h after axotomy (primary mouse thalamus neuronal explant)
Method: electron tomography / : Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

EMDB-71755:
Cryo-ET reconstruction of a regenerating axon 24 h after axotomy (primary mouse thalamus neuronal explant)
Method: electron tomography / : Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

EMDB-71840:
Cryo-ET subtomogram averaging of a stress fiber from a regenerating axon
Method: subtomogram averaging / : Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

EMDB-54837:
Chlamydomonas nuclear envelope-bound ribosome
Method: subtomogram averaging / : Waltz F, Lamm L, Righetto RD, Engel BD

EMDB-52727:
AB Spike of RHDV mutant N15
Method: single particle / : Novoa G, Martinez-Romero JM, Perez-Mata C, Barcena J, Caston JR

PDB-9i8j:
AB Spike of RHDV mutant N15
Method: single particle / : Novoa G, Martinez-Romero JM, Perez-Mata C, Barcena J, Caston JR

EMDB-53487:
human FAM118B trimeric filament
Method: single particle / : Baretic D, Missoury S, Patel K, Coste F, Delarue M, Suskiewicz JM, Ahel I

EMDB-53488:
human FAM118B pentameric filament
Method: single particle / : Baretic D, Missoury S, Patel K, Coste F, Delarue M, Suskiewicz JM, Ahel I

EMDB-53555:
Human FAM118B(34-334) 2 protomers
Method: single particle / : Missoury S, Coste F, Baretic D, Patel K, Delarue M, Ahel I, Suskiewicz MJ

PDB-9r0p:
human FAM118B trimeric filament
Method: single particle / : Baretic D, Missoury S, Patel K, Coste F, Delarue M, Suskiewicz JM, Ahel I

PDB-9r0s:
human FAM118B pentameric filament
Method: single particle / : Baretic D, Missoury S, Patel K, Coste F, Delarue M, Suskiewicz JM, Ahel I

PDB-9r3e:
Human FAM118B(34-334) 2 protomers
Method: single particle / : Missoury S, Coste F, Baretic D, Patel K, Delarue M, Ahel I, Suskiewicz MJ

EMDB-52588:
Capsid of RHDV mutant - 29N
Method: single particle / : Novoa G, Martinez-Romero JM, Perez-Mata C, Barcena J

PDB-9i3e:
CP of RHDV mutant - 29N
Method: single particle / : Novoa G, Martinez-Romero JM, Perez-Mata C, Barcena J

EMDB-52747:
Capsid of empty RHDV virion
Method: single particle / : Novoa G, Martinez-Romero JM, Perez-Mata C, Barcena J, Caston JR

PDB-9i90:
CP of empty RHDV virion
Method: single particle / : Novoa G, Martinez-Romero JM, Perez-Mata C, Barcena J, Caston JR

EMDB-52733:
Capsid of RHDV VLP (VP1)
Method: single particle / : Novoa G, Martinez-Romero JM, Perez-Mata C, Barcena J, Caston JR

PDB-9i8r:
CP of RHDV VLP (VP1)
Method: single particle / : Novoa G, Martinez-Romero JM, Perez-Mata C, Barcena J, Caston JR

EMDB-52757:
Capsid of RHDV virion (full particle)
Method: single particle / : Novoa G, Martinez-Romero JM, Perez-Mata C, Barcena J, Caston JR

PDB-9i9d:
CP of RHDV virion (full particle)
Method: single particle / : Novoa G, Martinez-Romero JM, Perez-Mata C, Barcena J, Caston JR

EMDB-52593:
Capsid of RHDV mutant - N15
Method: single particle / : Novoa G, Martinez-Romero JM, Perez-Mata C, Barcena J, Caston JR

PDB-9i3h:
CP of RHDV mutant - N15
Method: single particle / : Novoa G, Martinez-Romero JM, Perez-Mata C, Barcena J, Caston JR

EMDB-71750:
In situ microtubule of EpoB-induced regenerating axons
Method: helical / : Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

PDB-9pnd:
In situ microtubule of EpoB-induced regenerating axons
Method: helical / : Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

EMDB-49708:
cryo-EM structure of broad betacoronavirus binding antibody 1871 in complex with OC43 S2 subunit
Method: single particle / : Muthuraman K, Jackman MJ, Julien JP

EMDB-51384:
Structure of Sticholisin II in large unilamellar vesicles.
Method: single particle / : Santiago C, Martin-Benito J, Arranz R, Masiulis S

EMDB-51432:
Structure of fragacetoxin C in lipid nanodiscs
Method: single particle / : Martin Benito J, Santiago C

EMDB-45286:
Cryo EM map of SARS-COV-2 (BQ 1.1) spike protein in complex with Fab COV2-3891 (2 open 1 close)
Method: single particle / : Binshtein E, Crowe JE

EMDB-45287:
Cryo EM structure of SARS-COV-2 (BQ 1.1) RBD in complex with Fab COV2-3891 (local refine)
Method: single particle / : Binshtein E, Crowe JE

PDB-9c7s:
Cryo EM structure of SARS-COV-2 (BQ 1.1) RBD in complex with Fab COV2-3891 (local refine)
Method: single particle / : Binshtein E, Crowe JE

EMDB-51426:
Structure of the octameric pore of Fragaceotxin C (FraC or DELTA-actitoxin-Afr1a) in large unilamellar vesicles.
Method: single particle / : Martin Benito J, Santiago C, Carlero D, Arranz R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more