[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 13,529 items for (author: ma & sc)

EMDB-48285:
Human PARP1 N-terminal domains bound to nicked DNA
Method: single particle / : Sverzhinsky A, Pascal JM

PDB-9mi8:
Human PARP1 N-terminal domains bound to nicked DNA
Method: single particle / : Sverzhinsky A, Pascal JM

EMDB-54985:
Subtomogram average of nucleosomes extracted from vitreous sections of Drosophila melanogaster embryos
Method: subtomogram averaging / : Fatmaoui F, Iusupova A, Grewe D, Taiki F, Leforestier A, Eltsov M

EMDB-75185:
Rhesus rotavirus (consensus structure at 4.7 Angstrom resolution from cryo-ET)
Method: subtomogram averaging / : de Sautu M, Leistner C, Kirchhausen T, Jenni S, Harrison SC

EMDB-53260:
Inward-occluded structure of human GABA transporter 3 bound to substrate GABA
Method: single particle / : Mortensen JS, Bavo F, Jensen MH, Pedersen APS, Storm JP, Pape T, Frolund B, Wellendorph P, Shahsavar A

PDB-9qo9:
Inward-occluded structure of human GABA transporter 3 bound to substrate GABA
Method: single particle / : Mortensen JS, Bavo F, Jensen MH, Pedersen APS, Storm JP, Pape T, Frolund B, Wellendorph P, Shahsavar A

EMDB-64627:
In situ cryo-electron tomogram of 4days rpn9 surface mutant nucleus
Method: electron tomography / : Qu L, Tang XM, Baumeister W

EMDB-64628:
In situ cryo-electron tomogram of 18h nucleus
Method: electron tomography / : Qu L, Tang XM, Baumeister W

EMDB-64629:
In situ cryo-electron tomogram of 4days WT cytoplasm 3
Method: electron tomography / : Qu L, Tang XM, Baumeister W

EMDB-64630:
In situ cryo-electron tomogram of 4days glucose 1h WT nucleus
Method: electron tomography / : Qu L, Tang XM, Baumeister W

EMDB-64631:
In situ cryo-electron tomogram of 4days glucose control WT nucleus
Method: electron tomography / : Qu L, Tang XM, Baumeister W

EMDB-64632:
In situ cryo-electron tomogram of SA 1day WT cytoplasm 1
Method: electron tomography / : Qu L, Tang XM, Baumeister W

EMDB-64633:
In situ cryo-electron tomogram of SA 1day WT cytoplasm 2
Method: electron tomography / : Qu L, Tang XM, Baumeister W

EMDB-64634:
In situ cryo-electron tomogram of 4days mlp1delta mlp2delta nucleus
Method: electron tomography / : Qu L, Tang XM, Baumeister W

EMDB-64635:
In vitro cryo-electron tomogram of 4days WT purified
Method: electron tomography / : Qu L, Tang XM, Baumeister W

EMDB-64636:
In situ cryo-electron tomogram of 4days rpn9deltaN nucleus
Method: electron tomography / : Qu L, Tang XM, Baumeister W

EMDB-70356:
Structure of the MOR/Gi/Lofentanil Complex, Nucleotide Free
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70357:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-Primed
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70358:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-1
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70359:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-2, G Protein Local
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70360:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-2', G Protein Local
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70361:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-2/3, Global and G Protein Local
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70362:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-2/3, Global 3DVA Sorted 1
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70363:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-2/3, Global 3DVA Sorted 2
Method: single particle / : Robertson MJ, Skiniotis G

PDB-9ode:
Structure of the MOR/Gi/Lofentanil Complex, Nucleotide Free
Method: single particle / : Robertson MJ, Skiniotis G

PDB-9odf:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-Primed
Method: single particle / : Robertson MJ, Skiniotis G

PDB-9odg:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-1
Method: single particle / : Robertson MJ, Skiniotis G

PDB-9odh:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-2, G Protein Local
Method: single particle / : Robertson MJ, Skiniotis G

PDB-9odi:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-2', G Protein Local
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-53847:
Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Method: single particle / : Verstraete K, Verschueren K, Savvides SN, Steinberg GR

PDB-9r90:
Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Method: single particle / : Verstraete K, Verschueren K, Savvides SN, Steinberg GR

EMDB-74113:
Competition for different elements of the nucleosome acidic patch yields distinct functional outcomes. VHH 1B2
Method: single particle / : Chakraborty U, Saccone EC, Becerra GC, Khan LF, Arslanovic N, Aguilar R, Gloor SL, Hunt SR, Folkwein HJ, Husby NL, Maier KE, Marunde MR, Schomburg NK, Vaidya A, Cowles MW, Venters BJ, Kassavetis G, Sun ZW, Kadonaga JT, Armache JP, Keogh MC, Tyler JK

EMDB-74114:
Competition for different elements of the nucleosome acidic patch yields distinct functional outcomes. VHH 1G1
Method: single particle / : Chakraborty U, Saccone EC, Becerra GC, Khan LF, Arslanovic N, Aguilar R, Gloor SL, Hunt SR, Folkwein HJ, Husby NL, Maier KE, Marunde MR, Schomburg NK, Vaidya A, Cowles MW, Venters BJ, Kassavetis G, Sun ZW, Kadonaga JT, Armache JP, Keogh MC, Tyler JK

PDB-9zen:
Competition for different elements of the nucleosome acidic patch yields distinct functional outcomes. VHH 1B2
Method: single particle / : Chakraborty U, Saccone EC, Becerra GC, Khan LF, Arslanovic N, Aguilar R, Gloor SL, Hunt SR, Folkwein HJ, Husby NL, Maier KE, Marunde MR, Schomburg NK, Vaidya A, Cowles MW, Venters BJ, Kassavetis G, Sun ZW, Kadonaga JT, Armache JP, Keogh MC, Tyler JK

PDB-9zeo:
Competition for different elements of the nucleosome acidic patch yields distinct functional outcomes. VHH 1G1
Method: single particle / : Chakraborty U, Saccone EC, Becerra GC, Khan LF, Arslanovic N, Aguilar R, Gloor SL, Hunt SR, Folkwein HJ, Husby NL, Maier KE, Marunde MR, Schomburg NK, Vaidya A, Cowles MW, Venters BJ, Kassavetis G, Sun ZW, Kadonaga JT, Armache JP, Keogh MC, Tyler JK

EMDB-56448:
Cryo-EM structure of mouse Pannexin 1 in complex with a ligand
Method: single particle / : Drulyte I

EMDB-52782:
Nitrogenase maturase NifEN in complex with the cofactor chaperone NifX
Method: single particle / : Schneider FF, Martin del Campo JS, Zhang L, Dean DR, Einsle O

EMDB-52783:
Nitrogenase maturase NifEN
Method: single particle / : Schneider FF, Martin del Campo JS, Zhang L, Dean DR, Einsle O

PDB-9ian:
Nitrogenase maturase NifEN in complex with the cofactor chaperone NifX
Method: single particle / : Schneider FF, Martin del Campo JS, Zhang L, Dean DR, Einsle O

PDB-9iao:
Nitrogenase maturase NifEN
Method: single particle / : Schneider FF, Martin del Campo JS, Zhang L, Dean DR, Einsle O

EMDB-70083:
Human 80S ribosome stalled on MYC nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

EMDB-70084:
Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

EMDB-70086:
Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

PDB-9o3v:
Human 80S ribosome stalled on MYC nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

PDB-9o3w:
Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

PDB-9o3y:
Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

EMDB-70367:
Structure of the MOR/Gi/Mitragynine Pseudoindoxil Complex, GTP-bound G-Primed, Consensus Refinement
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70368:
Structure of the MOR/Gi/Mitragynine Pseudoindoxil Complex, GTP-bound G-ACT-2/3 Consensus Refinement
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70369:
Structure of the MOR/Gi/DAMGO Complex, Nucleotide Free, Baseline
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70370:
Structure of the MOR/Gi/DAMGO Complex, GTP-Bound, G-Primed
Method: single particle / : Robertson MJ, Skiniotis G

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more