[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 490 items for (author: lyu & x)

EMDB-73108:
RQd20_wk56_28 Fab in complex with V703-0537_L14 SOSIP and 3BNC117 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-73109:
RVz20_wk72_08 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Sewall LM, Ozorowski G, Ward AB

EMDB-73110:
RRr20_wk72_07 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9ymj:
RQd20_wk56_28 Fab in complex with V703-0537_L14 SOSIP and 3BNC117 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9ymk:
RVz20_wk72_08 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Sewall LM, Ozorowski G, Ward AB

PDB-9yml:
RRr20_wk72_07 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-55775:
apo state of CydDC in nanodisc
Method: single particle / : Changbin Z, Yongbo L, Lili Y

EMDB-67054:
CydDC in nanodisc with AMP-PNP-bound
Method: single particle / : Zhang C, Luo Y, Yang L

EMDB-67055:
CydDC in nanodisc with ATP
Method: single particle / : Zhang C, Luo Y, Yang L

EMDB-67183:
CydDC in nanodisc with heme-bound I
Method: single particle / : Zhang C, Luo Y, Yang L

EMDB-67273:
CydDC in nanodisc with heme-bound II
Method: single particle / : Zhang C, Luo Y, Yang L

PDB-9tby:
apo state of CydDC in nanodisc
Method: single particle / : Changbin Z, Yongbo L, Lili Y

PDB-9xno:
CydDC in nanodisc with AMP-PNP-bound
Method: single particle / : Zhang C, Luo Y, Yang L

PDB-9xnp:
CydDC in nanodisc with ATP
Method: single particle / : Zhang C, Luo Y, Yang L

PDB-9xsm:
CydDC in nanodisc with heme-bound I
Method: single particle / : Zhang C, Luo Y, Yang L

PDB-9xuo:
CydDC in nanodisc with heme-bound II
Method: single particle / : Zhang C, Luo Y, Yang L

EMDB-71019:
Consensus map of E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 1 the DNA recognition state
Method: single particle / : Zheng F, Yao YN, Georgescu R, O'Donnell ME, Li H

EMDB-71020:
Focus refined map of E. coli clamp loader sub-complex Psi-Chi
Method: single particle / : Zheng F, Yao YN, Georgescu R, O'Donnell ME, Li H

EMDB-53844:
Cryo-EM structure of Arabidopsis TIR-NLR WRR4A tetramer in complex with weakly bound effector CCG28 (C2-symmetry)
Method: single particle / : Zhao H, Lukoyanova N, Selvaraj M, Jones J

EMDB-71013:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 1 conformer 1 with flexibly bound DNA at the shoulder
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71014:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 1 conformer 2 with flexibly bound DNA at the shoulder
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71015:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 1 conformer 3 with disordered DNA at the shoulder
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71016:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 2 conformer 1 with sharply bent DNA
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71017:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 2 conformer 2 with less bent DNA
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71018:
Cryo-EM map of the E. coli clamp loader DnaX-complex alone
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71021:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 1 the DNA recognition state
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71022:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 1 with fully open clamp and unsettled DNA
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71023:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 2 with fully open clamp and settled DNA
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71024:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 3 with partially closed clamp
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71025:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 4 with fully closed clamp
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71026:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 5 with fully closed clamp
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71027:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 6 with fully closed clamp
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyb:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 1 conformer 1 with flexibly bound DNA at the shoulder
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyc:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 1 conformer 2 with flexibly bound DNA at the shoulder
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyd:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 1 conformer 3 with disordered DNA at the shoulder
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oye:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 2 conformer 1 with sharply bent DNA
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyf:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 2 conformer 2 with less bent DNA
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyg:
Structure of the E. coli clamp loader DnaX-complex alone
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyh:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 1 the DNA recognition state
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyi:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 1 with fully open clamp and unsettled DNA
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyj:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 2 with fully open clamp and settled DNA
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyk:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 3 with partially closed clamp
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyl:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 4 with fully closed clamp
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oym:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 5 with fully closed clamp
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyn:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 6 with fully closed clamp
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-53375:
Cryo-EM structure of Arabidopsis TIR-NLR WRR4A tetramer in complex with effector CCG40 (C2-symmetry)
Method: single particle / : Zhao H, Lukoyanova N, Selvaraj M, Jones J

EMDB-53346:
CryoEM structure of Arabidopsis TIR-NLR WRR4A tetramer in complex with effector CCG40 (focused refinement)
Method: single particle / : Zhao H, Lukoyanova N, Selvaraj M, Jones J

EMDB-53235:
Cryo-EM structure of Arabidopsis TIR-NLR WRR4A tetramer in complex with effector CCG40
Method: single particle / : Zhao H, Lukoyanova N, Selvaraj M, Jones J

EMDB-63803:
Plant chloroplast dicarboxylate transporter AtDiT1
Method: single particle / : Yang Z, Zhang P

EMDB-63804:
Plant chloroplast dicarboxylate transporter AtDiT1 bound with OAA
Method: single particle / : Yang Z, Zhang P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more