[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 3,259 items for (author: lv & h)

EMDB-70628:
Cryo-EM structure of the salivary protein complex Saglin-SGS4 from Anopheles gambiae
Method: single particle / : Su T, Liu S, Williams AE, Calvo E, Zhou ZH

PDB-9on3:
Cryo-EM structure of the salivary protein complex Saglin-SGS4 from Anopheles gambiae
Method: single particle / : Su T, Liu S, Williams AE, Calvo E, Zhou ZH

EMDB-56110:
Flat clathrin lattice on endosomes
Method: subtomogram averaging / : Gul M, Hakala M, Moparthi SB, Ganeva I, Bernat-Silvestre C, Marcuello C, Espadas J, Colom A, Kukulski W, Vassilopoulos S, Kaksonen M, Roux A, Kudryashev M

EMDB-56112:
Cryo-electron tomogram of endosomes in HeLa cells
Method: electron tomography / : Hakala M, Moparthi SB, Ganeva I, Gul M, Bernat-Silvestre C, Marcuello C, Espadas J, Colom A, Kudryashev M, Kukulski W, Vassilopoulos S, Kaksonen M, Roux A

EMDB-55043:
CM1-activated gTuRC in complex with nascent alpha-E254D mutant microtubules
Method: single particle / : Llorca O, Serna M, Lopez-Perrote A

EMDB-55044:
CM1-activated gTuRC in complex with nascent wildtype microtubules
Method: single particle / : Llorca O, Serna M, Lopez-Perrote A

PDB-9smx:
CM1-activated gTuRC in complex with nascent alpha-E254D mutant microtubules
Method: single particle / : Llorca O, Serna M, Lopez-Perrote A

EMDB-53844:
Cryo-EM structure of Arabidopsis TIR-NLR WRR4A tetramer in complex with weakly bound effector CCG28 (C2-symmetry)
Method: single particle / : Zhao H, Lukoyanova N, Selvaraj M, Jones J

PDB-9r8w:
Cryo-EM structure of Arabidopsis TIR-NLR WRR4A tetramer in complex with weakly bound effector CCG28 (C2-symmetry)
Method: single particle / : Zhao H, Lukoyanova N, Selvaraj M, Jones J

EMDB-56440:
CryoEM map of chloroplastic photosynthetic NADP(+)-dependent malic enzyme
Method: single particle / : Drakonaki A, Gatsogiannis C

EMDB-56441:
CryoEM map of chloroplastic photosynthetic NADP(+)-dependent malic enzyme mutant (G200R) at pH 8
Method: single particle / : Drakonaki A, Gatsogiannis C

EMDB-56442:
CryoEM map of chloroplastic photosynthetic NADP(+)-dependent malic enzyme mutant (G200R) at pH 4.8
Method: single particle / : Drakonaki A, Gatsogiannis C

EMDB-56443:
CryoEM map of dimeric non-photosynthetic NADP(+)-dependent malic enzyme
Method: single particle / : Drakonaki A, Gatsogiannis C

EMDB-56444:
CryoEM map of tetrameric non-photosynthetic NADP(+)-dependent malic enzyme
Method: single particle / : Drakonaki A, Gatsogiannis C

EMDB-70011:
TMEM16F in liposomes in the absence of Ca2+ (expanded state)
Method: single particle / : Feng Z, Accardi A

EMDB-70012:
TMEM16F in liposomes in the presence of Ca2+ (closed state)
Method: single particle / : Feng Z, Accardi A

EMDB-70013:
TMEM16F in liposomes in the presence of Ca2+ (active state)
Method: single particle / : Feng Z, Accardi A

EMDB-70014:
TMEM16F R478E/E604R mutant in liposomes in the presence of Ca2+
Method: single particle / : Feng Z, Accardi A

EMDB-70015:
TMEM16F D409G mutant in liposomes in the presence of Ca2+ (closed state)
Method: single particle / : Feng Z, Accardi A

EMDB-70017:
TMEM16F D409G mutant in liposomes in the presence of Ca2+ (active state)
Method: single particle / : Feng Z, Accardi A

PDB-9o1l:
TMEM16F in liposomes in the absence of Ca2+ (expanded state)
Method: single particle / : Feng Z, Accardi A

PDB-9o1m:
TMEM16F in liposomes in the presence of Ca2+ (closed state)
Method: single particle / : Feng Z, Accardi A

PDB-9o1n:
TMEM16F in liposomes in the presence of Ca2+ (active state)
Method: single particle / : Feng Z, Accardi A

PDB-9o1o:
TMEM16F R478E/E604R mutant in liposomes in the presence of Ca2+
Method: single particle / : Feng Z, Accardi A

PDB-9o1p:
TMEM16F D409G mutant in liposomes in the presence of Ca2+ (closed state)
Method: single particle / : Feng Z, Accardi A

PDB-9o1q:
TMEM16F D409G mutant in liposomes in the presence of Ca2+ (active state)
Method: single particle / : Feng Z, Accardi A

EMDB-68217:
Gi bound kappa-opioid receptor in complex with difelikefalin
Method: single particle / : Zhang H, Wang R, Shi P, He X, Zhu Q, Xu Y, Yuan Q, Hu W, Wu K, Zheng Y, Zhou L, Liang J, Lv P, Xu Z, Zhuang Y, Xu H, Wang Y, Tian C

PDB-22es:
Gi bound kappa-opioid receptor in complex with difelikefalin
Method: single particle / : Zhang H, Wang R, Shi P, He X, Zhu Q, Xu Y, Yuan Q, Hu W, Wu K, Zheng Y, Zhou L, Liang J, Lv P, Xu Z, Zhuang Y, Xu H, Wang Y, Tian C

EMDB-68208:
Gi bound kappa-opioid receptor in complex with beta01
Method: single particle / : Zhang H, Wang R, Shi P, He X, Zhu Q, Xu Y, Yuan Q, Hu W, Wu K, Zheng Y, Zhou L, Liang J, Lv P, Xu Z, Zhuang Y, Xu H, Wang Y, Tian C

PDB-22em:
Gi bound kappa-opioid receptor in complex with beta01
Method: single particle / : Zhang H, Wang R, Shi P, He X, Zhu Q, Xu Y, Yuan Q, Hu W, Wu K, Zheng Y, Zhou L, Liang J, Lv P, Xu Z, Zhuang Y, Xu H, Wang Y, Tian C

EMDB-76895:
The Kaggle CryoET Object Identification Challenge: first place 80S ribosome
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76896:
The Kaggle CryoET Object Identification Challenge: first place apo-ferritin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76898:
The Kaggle CryoET Object Identification Challenge: first place virus-like-particle
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76899:
The Kaggle CryoET Object Identification Challenge: first place beta-galactosidase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76900:
The Kaggle CryoET Object Identification Challenge: first place beta-amylase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76901:
The Kaggle CryoET Object Identification Challenge: first place thyroglobulin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76875:
CryoEM structure of Papaya Meleira Virus (PMeV) particles purified directly from Carica papaya latex
Method: single particle / : de Oliveira G, Rodrigues S

EMDB-64402:
Cryo-EM strucutre of CXCR4 complexed with agonist SDV1a
Method: single particle / : Jiao HZ, Sang XH, Huang ZW, Hu HL

EMDB-64403:
Cryo-EM structure of CXCR4 complexed with agonist SDVX1
Method: single particle / : Jiao HZ, Sang XH, Huang ZW, Hu HL

PDB-9upu:
Cryo-EM strucutre of CXCR4 complexed with agonist SDV1a
Method: single particle / : Jiao HZ, Sang XH, Huang ZW, Hu HL

PDB-9upv:
Cryo-EM structure of CXCR4 complexed with agonist SDVX1
Method: single particle / : Jiao HZ, Sang XH, Huang ZW, Hu HL

EMDB-56772:
split variant of Aquifex aeolicus lumazine synthase-derived nucleocapsid variant NC-4
Method: single particle / : Tetter S, Hilvert D

PDB-28ro:
split variant of Aquifex aeolicus lumazine synthase-derived nucleocapsid variant NC-4
Method: single particle / : Tetter S, Hilvert D

EMDB-49997:
DHIK wk12 + Rhesus Macaque polyFab
Method: single particle / : Lin RN, Ward AB

EMDB-53375:
Cryo-EM structure of Arabidopsis TIR-NLR WRR4A tetramer in complex with effector CCG40 (C2-symmetry)
Method: single particle / : Zhao H, Lukoyanova N, Selvaraj M, Jones J

PDB-9qu9:
Cryo-EM structure of Arabidopsis TIR-NLR WRR4A tetramer in complex with effector CCG40 (C2-symmetry)
Method: single particle / : Zhao H, Lukoyanova N, Selvaraj M, Jones J

EMDB-70008:
TMEM16F in liposomes in the absence of Ca2+ (contracted state)
Method: single particle / : Feng Z, Accardi A

PDB-9o1i:
TMEM16F in liposomes in the absence of Ca2+ (contracted state)
Method: single particle / : Feng Z, Accardi A

EMDB-53346:
CryoEM structure of Arabidopsis TIR-NLR WRR4A tetramer in complex with effector CCG40 (focused refinement)
Method: single particle / : Zhao H, Lukoyanova N, Selvaraj M, Jones J

PDB-9qt4:
CryoEM structure of Arabidopsis TIR-NLR WRR4A tetramer in complex with effector CCG40 (focused refinement)
Method: single particle / : Zhao H, Lukoyanova N, Selvaraj M, Jones J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more