[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 252 items for (author: kim & dg)

EMDB-64468:
Subtomogram averaging of His6-tagged D13 assembled into scaffold-like particles from vaccinia virus
Method: subtomogram averaging / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

EMDB-64469:
Subtomogram averaging of in vitro assembly product of untagged D13, Twister
Method: subtomogram averaging / : Kim SM, Jang YT

EMDB-64470:
Cryo-EM structure of in vitro assembly product of untagged D13, Twister
Method: single particle / : Kim SM, Jang YT

EMDB-64471:
Two interacting D13 trimers at mode I interface in Twister assembly
Method: single particle / : Kim SM, Jang YT

EMDB-64472:
Two interacting D13 trimers at mode II interface in Twister assembly
Method: single particle / : Kim SM, Jang YT

EMDB-64473:
Two interacting D13 trimers at mode III interface in Twister assembly
Method: single particle / : Kim SM, Jang YT

EMDB-64474:
Cryo-EM structure of His6-tagged D13 assembled into scaffold-like particles from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

EMDB-64475:
Cryo-EM structure of eGFP-tagged D13 assembled into scaffold-like particles from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

EMDB-64476:
Cryo-EM structure of A17(1-16) peptide-bound D13 trimer from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

EMDB-64477:
Cryo-EM structure of A17(1-16) peptide-bound D13 assembled into scaffold-like particles from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

EMDB-80609:
Cryo-EM structure of the A17(1-16) peptide-bound N-terminal 17 residue truncated D13 trimer from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

EMDB-76895:
The Kaggle CryoET Object Identification Challenge: first place 80S ribosome
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76896:
The Kaggle CryoET Object Identification Challenge: first place apo-ferritin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76898:
The Kaggle CryoET Object Identification Challenge: first place virus-like-particle
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76899:
The Kaggle CryoET Object Identification Challenge: first place beta-galactosidase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76900:
The Kaggle CryoET Object Identification Challenge: first place beta-amylase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76901:
The Kaggle CryoET Object Identification Challenge: first place thyroglobulin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-68747:
Structure of CXCR4 in complex with a de-novo designed mini-protein antagonist
Method: single particle / : Banerjee R, Ganguly M, Banerjee N, Tiwari D, Muratspahic E, Baker D, Shukla AK

PDB-22xc:
Structure of CXCR4 in complex with a de-novo designed mini-protein antagonist
Method: single particle / : Banerjee R, Ganguly M, Banerjee N, Tiwari D, Muratspahic E, Baker D, Shukla AK

EMDB-75897:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 80S ribosome with VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75900:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 70S ribosome with VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Paraan M, Montabana EA, Yu Y

EMDB-75890:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of PP7 virus-like-particle with VPP (partial dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75895:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 80S ribosome without VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75896:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 80S ribosome without VPP (partial dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75898:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 70S ribosome without VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Paraan M, Montabana EA, Yu Y

EMDB-75899:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 70S ribosome without VPP (partial dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Paraan M, Montabana EA, Yu Y

EMDB-75263:
Apoferritin single-particle cryo-EM reconstruction using a Volta phase plate
Method: single particle / : Yu Y, Montabana L

EMDB-75265:
Apoferritin single-particle cryo-EM reconstruction under matched conditions without a phase plate
Method: single particle / : Yu Y, Montabana L

EMDB-70288:
Cryo-EM structure of EBV gB prefusion construct C3-GT
Method: single particle / : McCool RS, McLellan JS

EMDB-73043:
Cryo-EM structure of post-fusion EBV gB in complex with AMMO2 fab
Method: single particle / : Chou CW, McCool RS, McLellan JS

PDB-9oal:
Cryo-EM structure of EBV gB prefusion construct C3-GT
Method: single particle / : McCool RS, McLellan JS

PDB-9yka:
Cryo-EM structure of post-fusion EBV gB in complex with AMMO2 fab
Method: single particle / : Chou CW, McCool RS, McLellan JS

EMDB-73631:
The Kaggle CryoET Object Identification Challenge: ground truth 80S ribosome
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73633:
The Kaggle CryoET Object Identification Challenge: first place 80S ribosome
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73634:
The Kaggle CryoET Object Identification Challenge: ground truth apo-ferritin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73635:
The Kaggle CryoET Object Identification Challenge: first place apo-ferritin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73636:
The Kaggle CryoET Object Identification Challenge: ground truth virus-like-particle
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73637:
The Kaggle CryoET Object Identification Challenge: first place virus-like-particle
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73638:
The Kaggle CryoET Object Identification Challenge: ground truth beta-galactosidase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73639:
The Kaggle CryoET Object Identification Challenge: first place beta-galactosidase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73640:
The Kaggle CryoET Object Identification Challenge: ground truth beta-amylase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73641:
The Kaggle CryoET Object Identification Challenge: first place beta-amylase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73642:
The Kaggle CryoET Object Identification Challenge: ground truth thyroglobulin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73643:
The Kaggle CryoET Object Identification Challenge: first place thyroglobulin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-48650:
Structure of HKU5 spike C-terminal domain in complex with ACE2 from Pipistrellus abramus
Method: single particle / : Li N, Tsybovsky Y, Teng I, Zhou T

PDB-9mv0:
Structure of HKU5 spike C-terminal domain in complex with ACE2 from Pipistrellus abramus
Method: single particle / : Li N, Tsybovsky Y, Teng I, Zhou T

EMDB-45139:
nsEM map of macaque 32647 week 6 polyclonal Fab in complex with BG505 v5.2 Prime immunogen
Method: single particle / : Pratap PP, Cottrell CA, Ward AB

EMDB-45102:
nsEM map of macaque 32653 week 42 polyclonal Fab in complex with BG505 v5.2 Boost #2 immunogen
Method: single particle / : Pratap PP, Cottrell CA, Ward AB

EMDB-45140:
nsEM map of macaque 32653 week 6 polyclonal Fab in complex with BG505 v5.2 Prime immunogen
Method: single particle / : Pratap PP, Cottrell CA, Ward AB

EMDB-45141:
nsEM map of macaque 32647 week 10 polyclonal Fab in complex with BG505 v5.2 Boost #2 immunogen
Method: single particle / : Pratap PP, Cottrell CA, Ward AB

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more