[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 43 items for (author: hardenbrook & n)

EMDB-54262:
Cryo-EM structure of TCRpub/pMHC
Method: single particle / : Akil C, Zhu Y, Hardenbrook N, Zhang P

PDB-9ru5:
Cryo-EM structure of TCRpub/pMHC
Method: single particle / : Akil C, Zhu Y, Hardenbrook N, Zhang P

EMDB-54366:
Cryo-EM structure of TCRpriv/pMHC
Method: single particle / : Akil C, Zhu Y, Hardenbrook N, Zhang P

PDB-9rxm:
Cryo-EM structure of TCRpriv/pMHC
Method: single particle / : Akil C, Zhu Y, Hardenbrook N, Zhang P

EMDB-54273:
Cryo-EM structure of TCRpub/pMHC dimer
Method: single particle / : Akil C, Zhu Y, Hardenbrook N, Zhang P

PDB-9rup:
Cryo-EM structure of TCRpub/pMHC dimer
Method: single particle / : Akil C, Zhu Y, Hardenbrook N, Zhang P

EMDB-50836:
Rubisco in native beta-carboxysomes
Method: subtomogram averaging / : Sheng Y, Hardenbrook N, Li K

PDB-9fwv:
Rubisco in native beta-carboxysomes
Method: subtomogram averaging / : Sheng Y, Hardenbrook N, Li K

EMDB-52887:
In-situ structure of HIV-1 CA hexamer in NPC
Method: subtomogram averaging / : Zhen H, Peijun Z, Fronik S, Shen J, Shi J, Xu J, Chen L, Hardenbrook N, Thompson C, Neumann S, Engelman A, Aiken C

EMDB-52888:
In-situ structure of HIV-1 CA hexamer before the nuclear import
Method: subtomogram averaging / : Hou Z, Zhang P, Shen Y, Fronik S, Shen J, Shi J, Xu J, Chen L, Hardenbrook N, Thompson C, Neumann S, Engelman A, Aiken C

EMDB-52889:
In-situ structure of HIV-1 CA hexamer after the nuclear import
Method: subtomogram averaging / : Hou Z, Zhang P, Fronik S, Shen J, Shi J, Xu J, Chen L, Hardenbrook N, Thompson C, Neumann S, Engelman A, Aiken C

EMDB-53083:
Cytoplasmic ring structure of the NPC of CEM cells
Method: subtomogram averaging / : Hou Z, Zhang P, Shen Y, Fronik S, Shen J, Shi J, Xu J, Chen L, Hardenbrook N, Thompson C, Neumann S, Engelman A, Aiken C

EMDB-53084:
Inner ring structure of the NPC of CEM cells
Method: subtomogram averaging / : Hou Z, Zhang P, Shen Y, Fronik S, Shen J, Shi J, Xu J, Chen L, Hardenbrook N, Thompson C, Neumann S, Engelman A, Aiken C

EMDB-53085:
Luminal ring structure of the NPC of CEM cells
Method: subtomogram averaging / : Hou Z, Zhang P, Shen Y, Fronik S, Shen J, Shi J, Xu J, Chen L, Hardenbrook N, Thompson C, Neumann S, Engelman A, Aiken C

EMDB-53086:
Nuclear ring structure of the NPC of CEM cells
Method: subtomogram averaging / : Hou Z, Zhang P, Shen Y, Fronik S, Shen J, Shi J, Xu J, Chen L, Hardenbrook N, Thompson C, Neumann S, Engelman A, Aiken C

EMDB-52724:
cryoEM structure of HIV-1 KAKA/G225R mature CA hexamer
Method: single particle / : Zhu Y, Shen J, Shen Y, Xu J, Zhang P

PDB-9i8i:
cryoEM structure of HIV-1 KAKA/G225R mature CA hexamer
Method: single particle / : Zhu Y, Shen J, Shen Y, Xu J, Zhang P

EMDB-51821:
The structure from subtomogram averaging of HIV immature Gag with G225R mutation
Method: subtomogram averaging / : Zhu Y, Kleinpeter AB, Shen J, Freed OE, Zhang P

EMDB-51822:
The structure from subtomogram averaging of HIV-1 immature Gag with KAKA/G225R mutations
Method: subtomogram averaging / : Zhu Y, Kleinpeter AB, Shen J, Freed OE, Zhang P

EMDB-51823:
The structure from subtomogram averaging of HIV-1 immature Gag with KAKA/T8I/G225R mutations
Method: subtomogram averaging / : Zhu Y, Kleinpeter AB, Shen J, Freed OE, Zhang P

EMDB-51824:
The structure from subtomogram averaging of HIV-1 immature Gag with A77V/KAKA/T8I/G225R mutations
Method: subtomogram averaging / : Zhu Y, Kleinpeter AB, Shen J, Freed OE, Zhang P

EMDB-51825:
The structure from subtomogram averaging of HIV-1 immature Gag with KAKA/T8I mutations
Method: subtomogram averaging / : Zhu Y, Lucic A, Kleinpeter AB, Shen J, Freed OE, Zhang P

EMDB-51826:
The structure from subtomogram averaging of HIV-1 Gag with K227A mutation
Method: subtomogram averaging / : Zhu Y, Chen L, Kleinpeter AB, Shen J, Freed OE, Zhang P

EMDB-19181:
Beta-galactosidase (LacZ) purified from E. coli.
Method: single particle / : Hardenbrook NJ, Sheng Y, Zhang P

EMDB-19182:
Beta-galactosidase (LacZ) in complex with glycosyrin from Pseudomonas syringae.
Method: single particle / : Hardenbrook NJ, Sheng Y, Zhang P

EMDB-19183:
Beta-galactosidase (LacZ) in complex with synthetic glycosyrin.
Method: single particle / : Hardenbrook NJ, Sheng Y, Zhang P

PDB-8ri6:
Beta-galactosidase (LacZ) purified from E. coli.
Method: single particle / : Hardenbrook NJ, Sheng Y, Zhang P

PDB-8ri7:
Beta-galactosidase (LacZ) in complex with glycosyrin from Pseudomonas syringae.
Method: single particle / : Hardenbrook NJ, Sheng Y, Zhang P

PDB-8ri8:
Beta-galactosidase (LacZ) in complex with synthetic glycosyrin.
Method: single particle / : Hardenbrook NJ, Sheng Y, Zhang P

EMDB-16187:
Wild tye immature Gag Structure
Method: subtomogram averaging / : Zhu Y, Chen L, Hardenbrook N, Zhang P

EMDB-16190:
KAKA mutation immature Gag structure
Method: subtomogram averaging / : Zhu Y, Chen L, Hardenbrook N, Zhang P

EMDB-21365:
Anthrax octamer prechannel bound to full-length edema factor
Method: single particle / : Zhou K, Hardenbrook NJ

EMDB-21694:
Anthrax octamer prechannel bound to full-length lethal factor
Method: single particle / : Zhou K, Hardenbrook NJ

PDB-6vra:
Anthrax octamer prechannel bound to full-length edema factor
Method: single particle / : Zhou K, Hardenbrook NJ, Liu S, Cui YX, Krantz BA, Zhou ZH

PDB-6wjj:
Anthrax octamer prechannel bound to full-length lethal factor
Method: single particle / : Zhou K, Hardenbrook NJ, Liu S, Cui YX, Krantz BA, Zhou ZH

EMDB-20459:
Anthrax toxin protective antigen channels bound to lethal factor
Method: single particle / : Hardenbrook NJ, Liu S

EMDB-20955:
Anthrax toxin protective antigen channels bound to edema factor
Method: single particle / : Hardenbrook NJ, Liu S

EMDB-20957:
Anthrax toxin protective antigen channels bound to edema factor
Method: single particle / : Hardenbrook NJ, Liu S

EMDB-20958:
Anthrax toxin protective antigen channels bound to edema factor
Method: single particle / : Hardenbrook NJ, Liu S

PDB-6psn:
Anthrax toxin protective antigen channels bound to lethal factor
Method: single particle / : Hardenbrook NJ, Liu S, Zhou K, Zhou ZH, Krantz BA

PDB-6uzb:
Anthrax toxin protective antigen channels bound to edema factor
Method: single particle / : Hardenbrook NJ, Liu S, Zhou K, Zhou ZH, Krantz BA

PDB-6uzd:
Anthrax toxin protective antigen channels bound to edema factor
Method: single particle / : Hardenbrook NJ, Liu S, Zhou K, Zhou ZH, Krantz BA

PDB-6uze:
Anthrax toxin protective antigen channels bound to edema factor
Method: single particle / : Hardenbrook NJ, Liu S, Zhou K, Zhou ZH, Krantz BA

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more