[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 39 items for (author: ghanbarpour & a)

EMDB-71447:
Cryo-EM map of the FtsH.HflK/C membrane assembly extracted in carboxy-DIBMA from tobramycin-treated cells
Method: single particle / : Iqbal N, Ghanbarpour A

EMDB-71448:
Cryo-EM structure of the engineered HflK/C variant stabilized in the closed conformation via disulfide bond crosslinking.
Method: single particle / : Iqbal N, Ghanbarpour A

EMDB-71449:
Cryo-EM Map of the FtsH.HflK/C Complex Solubilized in DDM from Tobramycin-Treated Cells
Method: single particle / : Naseer I, Ghanbarpour A

PDB-9paw:
Cryo-EM structure of the engineered HflK/C variant stabilized in the closed conformation via disulfide bond crosslinking.
Method: single particle / : Iqbal N, Ghanbarpour A

EMDB-72631:
Cryo-EM Structure of Gp77 within the In Vitro Reconstituted RAZR:GP77 Complex
Method: single particle / : Yifei L, Zhang T, Laub M, Ghanbarpour A

PDB-9y6u:
Cryo-EM Structure of Gp77 within the In Vitro Reconstituted RAZR:GP77 Complex
Method: single particle / : Yifei L, Zhang T, Laub M, Ghanbarpour A

EMDB-72691:
Cryo-EM Map of the Copurified Ring-Activated Zinc-Finger RNase (RAZR, H154A) in Complex with Phage Protein Gp77
Method: single particle / : Zhang T, Laub M, Ghanbarpour A

EMDB-72693:
Cryo-EM map of the in vitro reconstituted RAZR:GP77 complex with AlphaFold-predicted models fitted into the density.
Method: single particle / : Lyu Y, Zhang T, Laub M, Ghanbarpour A

PDB-9y9c:
Cryo-EM map of the in vitro reconstituted RAZR:GP77 complex with AlphaFold-predicted models fitted into the density.
Method: single particle / : Lyu Y, Zhang T, Laub M, Ghanbarpour A

EMDB-72692:
Focused-Refinement Cryo-EM Map of the RAZR-ZFD Domain within the In Vitro Reconstituted RAZR.Gp77 Complex
Method: single particle / : Lyu Y, Zhang T, Laub M, Ghanbarpour A

EMDB-71688:
Cryo-EM structure of the ClpXP AAA+ protease bound to an unidentified portion of lambdaO-tagged Arc substrate within a translocation complex
Method: single particle / : Ghanbarpour A, Davis JH, Sauer RT

PDB-9pjd:
Cryo-EM structure of the ClpXP AAA+ protease bound to an unidentified portion of lambdaO-tagged Arc substrate within a translocation complex
Method: single particle / : Ghanbarpour A, Davis JH, Sauer RT

EMDB-71674:
Cryo-EM structure of the ClpXP AAA+ protease bound to lambdaO-tagged Arc in a recognition complex
Method: single particle / : Ghanbarpour A, Davis JH, Sauer RT

PDB-9pio:
Cryo-EM structure of the ClpXP AAA+ protease bound to lambdaO-tagged Arc in a recognition complex
Method: single particle / : Ghanbarpour A, Davis JH, Sauer RT

EMDB-49273:
Cryo-EM structure of ClpX from Pseudomonas aeruginosa
Method: single particle / : Ghanbarpour A, Sauer RT, Davis JH

EMDB-49274:
Cryo-EM structure of the endogenous ClpP1/ClpP2 heterocomplex from Pseudomonas aeruginosa bound to the AAA+ ClpX unfoldase.
Method: single particle / : Ghanbarpour A, Zhang JJ, Baker TA, Davis JH, Sauer RT

PDB-9ndj:
Cryo-EM structure of the endogenous ClpP1/ClpP2 heterocomplex from Pseudomonas aeruginosa bound to the AAA+ ClpX unfoldase.
Method: single particle / : Ghanbarpour A, Zhang JJ, Baker TA, Davis JH, Sauer RT

EMDB-46057:
Cryo-EM structure of a nautilus-like HflK/C assembly in complex with FtsH AAA protease
Method: single particle / : Ghanbarpour A, Sauer RT, Davis JH

EMDB-46058:
Cryo-EM structure of a nautilus-like HflK/C assembly in complex with FtsH AAA protease extracted endogenously from E. coli using DIBMA polymer
Method: single particle / : Ghanbarpour A, Sauer RT, Davis JH

EMDB-46059:
Cryo-EM structure of the endogenously extracted FtsH.HflK.HflC complex with two FtsH hexamers per nautilus-like HflK.HflC assembly
Method: single particle / : Ghanbarpour A, Sauer RT, Davis JH

EMDB-46061:
Cryo-EM structure of the endogenously extracted FtsH.HflK.HflC complex with one FtsH hexamer per nautilus-like HflK.HflC assembly
Method: single particle / : Ghanbarpour A, Sauer RT, Davis JH

EMDB-46062:
Cryo-EM structure of the overexpressed HflK.HflC complex
Method: single particle / : Ghanbarpour A, Sauer RT, Davis JH

PDB-9cz2:
Cryo-EM structure of a nautilus-like HflK/C assembly in complex with FtsH AAA protease
Method: single particle / : Ghanbarpour A, Sauer RT, Davis JH

EMDB-46056:
Cryo-EM structure of a 'hat' portion of FtsH.HflK.HflC complex
Method: single particle / : Ghanbarpour A, Sauer RT, Davis JH

PDB-9cz1:
Cryo-EM structure of a 'hat' portion of FtsH.HflK.HflC complex
Method: single particle / : Ghanbarpour A, Sauer RT, Davis JH

EMDB-43081:
Cryo-EM Structure of a Proteolytic ClpXP AAA+ Machine Poised to Unfold a Branched-Degron DHFR-ssrA Substrate Bound with MTX
Method: single particle / : Ghanbarpour A, Sauer RT, Davis JH

EMDB-45299:
Cryo-EM Structure of a Proteolytic ClpXP AAA+ Machine Poised to Unfold a Linear-Degron DHFR-ssrA Substrate Bound with MTX
Method: single particle / : Ghanbarpour A, Sauer RT, Davis JH

EMDB-45300:
Cryo-EM Structure of a Proteolytic ClpXP AAA+ Machine Translocating a Portion of a Branched-Degron DHFR Substrate
Method: single particle / : Ghanbarpour A, Sauer RT, Davis JH

PDB-8v9r:
Cryo-EM Structure of a Proteolytic ClpXP AAA+ Machine Poised to Unfold a Branched-Degron DHFR-ssrA Substrate Bound with MTX
Method: single particle / : Ghanbarpour A, Sauer RT, Davis JH

PDB-9c87:
Cryo-EM Structure of a Proteolytic ClpXP AAA+ Machine Poised to Unfold a Linear-Degron DHFR-ssrA Substrate Bound with MTX
Method: single particle / : Ghanbarpour A, Sauer RT, Davis JH

PDB-9c88:
Cryo-EM Structure of a Proteolytic ClpXP AAA+ Machine Translocating a Portion of a Branched-Degron DHFR Substrate
Method: single particle / : Ghanbarpour A, Sauer RT, Davis JH

EMDB-27941:
Cryo-EM structure of substrate-free DNClpX.ClpP from singly capped particles
Method: single particle / : Ghanbarpour A, Cohen S, Davis JH, Sauer RT

EMDB-27946:
Cryo-EM structure of substrate-free DNClpX.ClpP
Method: single particle / : Ghanbarpour A, Cohen S, Davis JH, Sauer RT

EMDB-27952:
Cryo-EM structure of substrate-free ClpX.ClpP
Method: single particle / : Ghanbarpour A, Davis JH, Sauer RT

PDB-8e7v:
Cryo-EM structure of substrate-free DNClpX.ClpP from singly capped particles
Method: single particle / : Ghanbarpour A, Cohen S, Davis JH, Sauer RT

PDB-8e8q:
Cryo-EM structure of substrate-free DNClpX.ClpP
Method: single particle / : Ghanbarpour A, Cohen S, Davis JH, Sauer RT

PDB-8e91:
Cryo-EM structure of substrate-free ClpX.ClpP
Method: single particle / : Ghanbarpour A, Davis JH, Sauer RT

EMDB-28585:
Cryo-EM structure of a delivery complex containing the SspB adaptor, an ssrA-tagged substrate, and the AAA+ ClpXP protease
Method: single particle / : Ghanbarpour A, Fei X, Davis JH, Sauer RT

PDB-8et3:
Cryo-EM structure of a delivery complex containing the SspB adaptor, an ssrA-tagged substrate, and the AAA+ ClpXP protease
Method: single particle / : Ghanbarpour A, Fei X, Davis JH, Sauer RT

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more