[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 3,435 items for (author: gen & r)

EMDB-71616:
Architecture of human Voltage Dependent Anion Channel 1 in nanodiscs
Method: single particle / : Modaresi SM, Degen M, Hiller S

PDB-9pfz:
Architecture of human Voltage Dependent Anion Channel 1 in nanodiscs
Method: single particle / : Modaresi SM, Degen M, Hiller S

EMDB-64522:
Single-subunit Escherichia coli nicotinamide nucleotide transhydrogenase in the presence of palmitoyl-CoA
Method: single particle / : Zhu J, Gennis RB, Zhang K, Li J

PDB-9uv3:
Single-subunit Escherichia coli nicotinamide nucleotide transhydrogenase in the presence of palmitoyl-CoA
Method: single particle / : Zhu J, Gennis RB, Zhang K, Li J

EMDB-64531:
Escherichia coli nicotinamide nucleotide transhydrogenase single dIII attached to dII state in the presence of NADPH
Method: single particle / : Zhu J, Gennis RB, Zhang K, Li J

EMDB-64530:
Escherichia coli transhydrogenase the dissociated (dI)2 dimer in the presence of both NADPH and NADP+
Method: single particle / : Zhu J, Gennis RB, Zhang K, Li J

PDB-9uvb:
Escherichia coli transhydrogenase the dissociated (dI)2 dimer in the presence of both NADPH and NADP+
Method: single particle / : Zhu J, Gennis RB, Zhang K, Li J

EMDB-64533:
Escherichia coli transhydrogenase single dIII attached to dII state in the presence of both NADPH and NADP+
Method: single particle / : Zhu J, Gennis RB, Zhang K, Li J

EMDB-64521:
Single-subunit apo Escherichia coli nicotinamide nucleotide transhydrogenase
Method: single particle / : Zhu J, Gennis RB, Zhang K, Li J

EMDB-64527:
Single-subunit apo Escherichia coli nicotinamide nucleotide transhydrogenase
Method: single particle / : Zhu J, Gennis RB, Zhang K, Li J

PDB-9uv2:
Single-subunit apo Escherichia coli nicotinamide nucleotide transhydrogenase
Method: single particle / : Zhu J, Gennis RB, Zhang K, Li J

PDB-9uv7:
Single-subunit apo Escherichia coli nicotinamide nucleotide transhydrogenase
Method: single particle / : Zhu J, Gennis RB, Zhang K, Li J

EMDB-64524:
Structures of multiple states of the nicotinamide nucleotide transhydrogenase from Escherichia coli
Method: single particle / : Zhu J, Gennis RB, Zhang K, Li J

EMDB-64525:
Structures of multiple states of the nicotinamide nucleotide transhydrogenase from Escherichia coli
Method: single particle / : Zhu J, Gennis RB, Zhang K, Li J

EMDB-64529:
Structures of multiple states of the nicotinamide nucleotide transhydrogenase from Escherichia coli
Method: single particle / : Zhu J, Gennis RB, Zhang K, Li J

PDB-9uva:
Structures of multiple states of the nicotinamide nucleotide transhydrogenase from Escherichia coli
Method: single particle / : Zhu J, Gennis RB, Zhang K, Li J

EMDB-64520:
Wild-type apo Escherichia coli nicotinamide nucleotide transhydrogenase
Method: single particle / : Zhu J, Gennis RB, Zhang K, Li J

PDB-9uuy:
Wild-type apo Escherichia coli nicotinamide nucleotide transhydrogenase
Method: single particle / : Zhu J, Gennis RB, Zhang K, Li J

EMDB-70888:
Structure of Geobacillus stearothermophilus RNase P ribozyme
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70891:
Structure of Geobacillus stearothermophilus RNase P ribozyme sub-conformation 1
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70892:
Structure of Geobacillus stearothermophilus RNase P ribozyme sub-conformation 2
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70893:
Structure of Geobacillus stearothermophilus RNase P ribozyme sub-conformation 3
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70896:
Structure of Geobacillus stearothermophilus RNase P ribozyme in 5 mM Mg2+
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70897:
Structure of Geobacillus stearothermophilus RNase P ribozyme in 10 mM Mg2+
Method: single particle / : Lee YT, Skeparnias I, Stagno JR, Wang YX

EMDB-70933:
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA in 5 mM Ca2+
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70935:
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with mature tRNA in 5 mM Ca2+
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70936:
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with mature tRNA in 10 mM Ca2+
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70994:
Structure of Geobacillus stearothermophilus RNase P ribozyme tetraloop mutant (sub-conformation 1)
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70995:
Structure of Geobacillus stearothermophilus RNase P ribozyme tetraloop mutant (sub-conformation 2)
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70996:
Structure of Geobacillus stearothermophilus RNase P ribozyme tetraloop mutant (sub-conformation 3)
Method: single particle / : Lee YT, Stagno JR, Wang YX

PDB-9ov3:
Structure of Geobacillus stearothermophilus RNase P ribozyme
Method: single particle / : Lee YT, Stagno JR, Wang YX

PDB-9ov6:
Structure of Geobacillus stearothermophilus RNase P ribozyme sub-conformation 1
Method: single particle / : Lee YT, Stagno JR, Wang YX

PDB-9ov7:
Structure of Geobacillus stearothermophilus RNase P ribozyme sub-conformation 2
Method: single particle / : Lee YT, Stagno JR, Wang YX

PDB-9ov8:
Structure of Geobacillus stearothermophilus RNase P ribozyme sub-conformation 3
Method: single particle / : Lee YT, Stagno JR, Wang YX

PDB-9ovb:
Structure of Geobacillus stearothermophilus RNase P ribozyme in 5 mM Mg2+
Method: single particle / : Lee YT, Stagno JR, Wang YX

PDB-9ovc:
Structure of Geobacillus stearothermophilus RNase P ribozyme in 10 mM Mg2+
Method: single particle / : Lee YT, Skeparnias I, Stagno JR, Wang YX

PDB-9owj:
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA in 5 mM Ca2+
Method: single particle / : Lee YT, Stagno JR, Wang YX

PDB-9owl:
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with mature tRNA in 5 mM Ca2+
Method: single particle / : Lee YT, Stagno JR, Wang YX

PDB-9owm:
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with mature tRNA in 10 mM Ca2+
Method: single particle / : Lee YT, Stagno JR, Wang YX

PDB-9oy2:
Structure of Geobacillus stearothermophilus RNase P ribozyme tetraloop mutant (sub-conformation 1)
Method: single particle / : Lee YT, Stagno JR, Wang YX

PDB-9oy3:
Structure of Geobacillus stearothermophilus RNase P ribozyme tetraloop mutant (sub-conformation 2)
Method: single particle / : Lee YT, Stagno JR, Wang YX

PDB-9oy4:
Structure of Geobacillus stearothermophilus RNase P ribozyme tetraloop mutant (sub-conformation 3)
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-76232:
Structure of the Porcine deltacoronavirus (PDCoV) receptor-binding domain bound to the RBD minibinder 11, the PD3 Fab, and the Kappa light chain nanobody (local refinement)
Method: single particle / : Avery NG, Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-76233:
Structure of the Porcine deltacoronavirus (PDCoV) receptor-binding domain bound to the RBD minibinder 11, the PD3 Fab, and the Kappa light chain nanobody
Method: single particle / : Avery NG, Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-11zv:
Structure of the Porcine deltacoronavirus (PDCoV) receptor-binding domain bound to the RBD minibinder 11, the PD3 Fab, and the Kappa light chain nanobody (local refinement)
Method: single particle / : Avery NG, Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-11zw:
Structure of the Porcine deltacoronavirus (PDCoV) receptor-binding domain bound to the RBD minibinder 11, the PD3 Fab, and the Kappa light chain nanobody
Method: single particle / : Avery NG, Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-70721:
TMPRSS2 (S441A) bound to the HCoV-NL63 S2'region genetically fused to the HCoV-HKU1 RBD
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-70722:
TMPRSS2 S441A in complex with the H1H7 Fab and anti-kappa light chain nanobody
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-73656:
SARS-CoV-2 spike trimer in the early fusion intermediate conformation bound to the VN01H1 Fab (Fab local refinement)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-73657:
SARS-CoV-2 spike trimer in the early fusion intermediate conformation bound to the VN01H1 Fab (S2 local refinement)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more