[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 28 items for (author: gamper & hb)

EMDB-47384:
Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA
Method: single particle / : Majumdar S, Ojha AK, Agrawal RK

EMDB-47419:
Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit
Method: single particle / : Majumdar S, Ojha AK, Agrawal RK

EMDB-47876:
Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome
Method: single particle / : Majumdar S, Ojha AK, Agrawal RK

EMDB-47899:
Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.
Method: single particle / : Majumdar S, Ojha AK, Agrawal RK

EMDB-47909:
Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to Mycobacterium tuberculosis C- 70S ribosome
Method: single particle / : Majumdar S, Ojha AK, Agrawal RK

EMDB-47910:
Cryo-EM structure of the Mycobacterium tuberculosis C- 70S ribosome bound to fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites
Method: single particle / : Majumdar S, Ojha AK, Agrawal RK

EMDB-63380:
Cryo-EM structure of Rhizobium etli MprF complexed with Lys-N-tRNA(Lys)
Method: single particle / : Nishimura M, Hirano H, Gill CP, Phan CNK, Gamper HB, Will A, Yamashita K, Yashiro Y, Kobayashi K, Kise Y, Kusakizako T, Itoh Y, Tomita K, Hou YM, Nishizawa T, Roy H, Nureki O

EMDB-63384:
Cryo-EM map of Rhizobium etli MprF complexed with Lys-N-tRNA(Lys) with the improved density of the anticodon stem loop of Lys-N-tRNA(Lys)
Method: single particle / : Nishimura M, Hirano H, Gill CP, Phan CNK, Gamper HB, Will A, Yamashita K, Kobayashi K, Kise Y, Kusakizako T, Itoh Y, Hou YM, Nishizawa T, Roy H, Nureki O

EMDB-65772:
Cryo-EM structure of Aspergillus fumigatus ErdS tetramer
Method: single particle / : Murayama H, Nishimura M, Kise Y, Itoh Y, Nureki O

EMDB-65773:
Cryo-EM structure of Aspergillus fumigatus ErdS dimer with tRNA(Asp) acceptor stem docked at the AspRS active site
Method: single particle / : Murayama H, Nishimura M, Kise Y, Itoh Y, Nureki O

EMDB-65774:
Cryo-EM structure of Aspergillus fumigatus ErdS dimer with tRNA(Asp) acceptor stem in an intermediate position toward the ATT active site
Method: single particle / : Murayama H, Nishimura M, Kise Y, Itoh Y, Nureki O

EMDB-29397:
Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex
Method: single particle / : Majumdar S, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

EMDB-25405:
Late translocation intermediate with EF-G partially dissociated (Structure V)
Method: single particle / : Carbone CE, Loveland AB

EMDB-25407:
Mid translocation intermediate with EF-G bound with GDP (Structure IV)
Method: single particle / : Carbone CE, Korostelev AA

EMDB-25409:
Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)
Method: single particle / : Carbone CE, Korostelev AA

EMDB-25410:
Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B)
Method: single particle / : Carbone CE, Korostelev AA

EMDB-25411:
Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A)
Method: single particle / : Carbone CE, Korostelev AA

EMDB-25415:
Late translocation intermediate with EF-G dissociated (Structure VI)
Method: single particle / : Carbone CE, Korostelev AA

EMDB-25418:
Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII)
Method: single particle / : Carbone CE, Korostelev AA

EMDB-25420:
Pre translocation, non-rotated 70S ribosome (Structure I)
Method: single particle / : Carbone CE, Korostelev AA

EMDB-25421:
Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)
Method: single particle / : Carbone CE, Korostelev AA

EMDB-22669:
Cryo-EM map of pre-translocation non-frameshifting(CCA-A) complex (Structure I)
Method: single particle / : Demo G, Loveland AB

EMDB-22670:
Cryo-EM map of mid-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure II)
Method: single particle / : Demo G, Loveland AB

EMDB-22671:
Cryo-EM map of near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)
Method: single particle / : Demo G, Loveland AB

EMDB-22672:
Cryo-EM map of pre-translocation +1-frameshifting(CCC-A) complex (Structure I-FS)
Method: single particle / : Demo G, Loveland AB

EMDB-22673:
Cryo-EM of mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)
Method: single particle / : Demo G, Loveland AB

EMDB-22674:
Cryo-EM map of near post-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure III-FS)
Method: single particle / : Demo G, Loveland AB

EMDB-23528:
Cryo-EM of pre-translocation rotated ribosome +1-frameshifting(CCC-A) complex (Structure Irot-FS)
Method: single particle / : Demo G, Loveland AB

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more