[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 49 items for (author: fry & my)

EMDB-43049:
Cryo-electron tomogram of mitochondria from cryo-FIB milled l-Opa1* mouse embryonic fibroblasts
Method: electron tomography / : Fry MY, Navarro PP, Ananda VY, Ge Y, McDonald JL, Hakim P, Lugo CM, Luce BE, Chao LH

EMDB-43050:
cryo-electron tomogram of mitochondria in cryo-FIB milled l-Opa1* mouse embryonic fibroblasts
Method: electron tomography / : Fry MY, Navarro PP, Ananda VY, Ge Y, McDonald JL, Hakim P, Luce BE, Lugo CM, Chao LH

EMDB-43051:
cryo-electron tomogram of mitochondria in cryo-FIB milled l-Opa1* mouse embryonic fibroblasts
Method: electron tomography / : Fry MY, Navarro PP, Ananda VY, Ge Y, McDonald JL, Hakim P, Luce BE, Lugo CM, Chao LH

EMDB-43052:
cryo-electron tomogram of mitochondria in cryo-FIB milled l-Opa1* mouse embryonic fibroblasts
Method: electron tomography / : Fry MY, Navarro PP, Ananda VY, Ge Y, McDonald JL, Hakim P, Luce BE, Lugo CM, Chao LH

EMDB-43053:
Cryo-electron tomogram of mitochondria in cryo-FIB milled s-Opa1* mouse embryonic fibroblasts
Method: electron tomography / : Fry MY, Navarro PP, Ananda VY, Ge Y, McDonald JL, Hakim P, Lugo CM, Luce BE, Chao LH

EMDB-43054:
cryo-electron tomogram of mitochondria in cryo-FIB milled s-Opa1* mouse embryonic fibroblasts
Method: electron tomography / : Fry MY, Navarro PP, Ananda VY, Ge Y, McDonald JL, Hakim P, Lugo CM, Luce BE, Chao LH

EMDB-43055:
cryo-electron tomogram of mitochondria in cryo-FIB milled s-Opa1* mouse embryonic fibroblasts
Method: electron tomography / : Fry MY, Navarro PP, Ananda VY, Ge Y, McDonald JL, Hakim P, Lugo CM, Luce BE, Chao LH

EMDB-43056:
cryo-electron tomogram of mitochondria in cryo-FIB milled s-Opa1* mouse embryonic fibroblasts
Method: electron tomography / : Fry MY, Navarro PP, Ananda VY, Ge Y, McDonald JL, Hakim P, Lugo CM, Luce BE, Chao LH

EMDB-43057:
Cryo-electron tomogram of mitochondria in cryo-FIB milled s-Opa1* mouse embryonic fibroblasts
Method: electron tomography / : Fry MY, Navarro PP, Ananda VY, Ge Y, McDonald JL, Hakim P, Lugo CM, Luce BE, Chao LH

EMDB-43058:
Cryo-electron tomogram of mitochondria in cryo-FIB milled mouse embryonic fibroblasts with OPA1 deletion
Method: electron tomography / : Fry MY, Navarro PP, Ananda VY, Ge Y, McDonald JL, Hakim P, Lugo CM, Luce BE, Chao LH

EMDB-43059:
Cryo-electron tomogram of mitochondria in cryo-FIB milled mouse embryonic fibroblasts with OPA1 deletion
Method: electron tomography / : Fry MY, Navarro PP, Ananda VY, Ge Y, McDonald JL, Hakim P, Luce BE, Lugo CM, Chao LH

EMDB-43060:
Cryo-electron tomogram of mitochondria in cryo-FIB milled mouse embryonic fibroblasts with OPA1 deletion
Method: electron tomography / : Fry MY, Navarro PP, Ananda VY, Ge Y, McDonald JL, Hakim P, Luce BE, Lugo CM, Chao LH

EMDB-43061:
Cryo-electron tomogram of mitochondria in cryo-FIB milled mouse embryonic fibroblasts with OPA1 deletion
Method: electron tomography / : Fry MY, Navarro PP, Ananda VY, Ge Y, McDonald JL, Hakim P, Luce BE, Lugo CM, Chao LH

EMDB-43062:
Cryo-electron tomogram of mitochondria in cryo-FIB milled mouse embryonic fibroblasts with OPA1 deletion
Method: electron tomography / : Fry MY, Navarro PP, Ananda VY, Ge Y, McDonald JL, Hakim P, Lugo CM, Luce BE, Chao LH

EMDB-43063:
Cryo-electron tomogram of mitochondria in cryo-FIB milled mouse embryonic fibroblasts
Method: electron tomography / : Navarro PP, Fry MY, Ananda VY, Ge Y, McDonald JL, Ali I, Hakim P, Lugo CM, Luce BE, Chao LH

EMDB-43064:
Cryo-electron tomogram of mitochondria in cryo-FIB milled mouse embryonic fibroblasts
Method: electron tomography / : Navarro PP, Fry MY, Ananda VY, Ge Y, McDonald JL, Ali I, Hakim P, Lugo CM, Luce BE, Chao LH

EMDB-43065:
Cryo-electron tomogram of mitochondria in cryo-FIB milled mouse embryonic fibroblasts
Method: electron tomography / : Navarro PP, Fry MY, Ananda VY, Ge Y, McDonald JL, Ali I, Hakim P, Lugo CM, Luce BE, Chao LH

EMDB-43066:
Cryo-electron tomogram of mitochondria in cryo-FIB milled mouse embryonic fibroblasts
Method: electron tomography / : Navarro PP, Fry MY, Ananda VY, Ge Y, McDonald JL, Ali I, Hakim P, Lugo CM, Luce BE, Chao LH

EMDB-43067:
Cryo-electron tomogram of mitochondria in cryo-FIB milled mouse embryonic fibroblasts with overexpression of OPA1
Method: electron tomography / : Navarro PP, Fry MY, Ananda VY, Ge Y, McDonald JL, Ali I, Hakim P, Lugo CM, Luce BE, Chao LH

EMDB-43068:
Cryo-electron tomogram of mitochondria in cryo-FIB milled mouse embryonic fibroblasts with overexpression of OPA1
Method: electron tomography / : Navarro PP, Fry MY, Ananda VY, Ge Y, McDonald JL, Ali I, Hakim P, Lugo CM, Luce BE, Chao LH

EMDB-43069:
Cryo-electron tomogram of mitochondria in cryo-FIB milled mouse embryonic fibroblasts with overexpression of OPA1
Method: electron tomography / : Navarro PP, Fry MY, Ananda VY, Ge Y, McDonald JL, Ali I, Hakim P, Lugo CM, Luce BE, Chao LH

EMDB-43070:
Cryo-electron tomogram of mitochondria in cryo-FIB milled mouse embryonic fibroblasts with overexpression of OPA1
Method: electron tomography / : Navarro PP, Fry MY, Ananda VY, Ge Y, McDonald JL, Ali I, Hakim P, Lugo CM, Luce BE, Chao LH

EMDB-25373:
Get3 bound to ADP and the transmembrane domain of the tail-anchored protein Bos1 - nucleotide binding domain map
Method: single particle / : Fry MY, Maggiolo AO

EMDB-25374:
Get3 bound to ADP and the transmembrane domain of the tail-anchored protein Bos1 - overall map
Method: single particle / : Fry MY, Maggiolo AO, Clemons Jr WM

EMDB-25375:
Nucleotide-free Get3 in the closed form
Method: single particle / : Fry MY, Clemons Jr WM

EMDB-13742:
SARS-CoV-2 Spike ectodomain with Fab FI3A
Method: single particle / : Duyvesteyn HME, Ren J

EMDB-7900:
REGN3479 antibody Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Ward AB

EMDB-7901:
REGN3470 antibody Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Ward AB

EMDB-7902:
REGN3471 antibody Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Ward AB

PDB-4av2:
Single particle electron microscopy of PilQ dodecameric complexes from Neisseria meningitidis.
Method: single particle / : Berry JL, Phelan MM, Collins RF, Adomavicius T, Tonjum T, Frye SA, Bird L, Owens R, Ford RC, Lian LY, Derrick JP

EMDB-2105:
Single particle electron microscopy of PilQ dodecameric complexes from Neisseria meningitidis.
Method: single particle / : Berry JL, Phelan MM, Collins RF, Adomavicius T, Tonjum T, Frye S, Bird L, Owens R, Ford RC, Lian LY, Derrick JP

PDB-3izh:
Mm-cpn D386A with ATP
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

PDB-3izi:
Mm-cpn rls with ATP
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

PDB-3izj:
Mm-cpn rls with ATP and AlFx
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

PDB-3izk:
Mm-cpn rls deltalid with ATP
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

PDB-3izl:
Mm-cpn rls deltalid with ATP and AlFx
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

PDB-3izm:
Mm-cpn wildtype with ATP
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

PDB-3izn:
Mm-cpn deltalid with ATP
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

EMDB-5244:
Mm-cpn D386A with ATP
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

EMDB-5245:
Mm-cpn rls with ATP
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

EMDB-5246:
Mm-cpn rls with ATP and AlFx
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

EMDB-5247:
Mm-cpn rls deltalid with ATP
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

EMDB-5248:
Mm-cpn rls deltalid with ATP and AlFx
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

EMDB-5249:
Mm-cpn wildtype with ATP
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

EMDB-5250:
Mm-cpn deltalid with ATP
Method: single particle / : Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J

PDB-3iyg:
Ca model of bovine TRiC/CCT derived from a 4.0 Angstrom cryo-EM map
Method: single particle / : Cong Y, Baker ML, Ludtke SJ, Frydman J, Chiu W

PDB-3ktt:
Atomic model of bovine TRiC CCT2(beta) subunit derived from a 4.0 Angstrom cryo-EM map
Method: single particle / : Cong Y, Baker ML, Ludtke SJ, Frydman J, Chiu W

EMDB-5145:
4.7 Angstrom asymmetric cryo-EM map of TRiC in the both-ring closed ATP-AlFx state
Method: single particle / : Cong Y, Baker ML, Jakana J, Woolford D, Miller EJ, Reissmann S, Kumar RN, Redding-Johanson AM, Batth TS, Mukhopadhyay A, Ludtke SJ, Frydman J, Chiu W

EMDB-5148:
4.0 Angstrom two-fold imposed cryo-EM map of TRiC in the both-ring closed ATP-AlFx state
Method: single particle / : Cong Y, Baker ML, Jakana J, Woolford D, Miller EJ, Reissmann S, Kumar RN, Redding-Johanson AM, Batth TS, Mukhopadhyay A, Ludtke SJ, Frydman J, Chiu W

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more