[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 106 items for (author: fontan & l)

EMDB-55245:
Herpes simplex virus 2 delta28-73 glycoprotein C ectodomain in complex with C3b
Method: single particle / : Rojas Rechy MH, Atanasiu D, Hook LM, Cairns MT, Saw WT, Cahill A, Guo Z, Calabrese AN, Ranson NA, Friedman HM, Cohen GH, Fontana J

EMDB-55293:
Herpes simplex virus 2 delta28-73 glycoprotein C (focus classification) ectodomain in complex with C3b
Method: single particle / : Rojas Rechy MH, Atanasiu D, Hook LM, Cairns MT, Saw WT, Cahill A, Guo Z, Calabrese AN, Ranson NA, Friedman HM, Cohen GH, Fontana J

PDB-9sv8:
Herpes simplex virus 2 delta28-73 glycoprotein C ectodomain in complex with C3b
Method: single particle / : Rojas Rechy MH, Atanasiu D, Hook LM, Cairns MT, Saw WT, Cahill A, Guo Z, Calabrese AN, Ranson NA, Friedman HM, Cohen GH, Fontana J

EMDB-50762:
Drosophila melanogaster Testis 80S ribosome with IFRD1 (Class 2)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-50763:
Drosophila melanogaster Testis 80S ribosome with IFRD1 (Class 1)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-50764:
Drosophila melanogaster Testis Polysome with P/P and A/A tRNAs (Class 1)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-50765:
Drosophila melanogaster Ovaries 80S ribosome vacant (Class 1)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-50766:
Drosophila melanogaster Ovaries 80S ribosome vacant (Class 2)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-50767:
Drosophila melanogaster Ovaries 80S ribosome vacant (Class 3)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-50768:
Drosophila melanogaster Ovaries 80S ribosome vacant (Class 4)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-50769:
Drosophila melanogaster Embryo 80S ribosome tRNA occupied (Class 1)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-50770:
Drosophila melanogaster Embryo 80S ribosome tRNA occupied (Class 2)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-50771:
Drosophila melanogaster Embryo 80S ribosome vacant (Class 1)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-50772:
Drosophila melanogaster Embryo 80S ribosome with E/E and P/P tRNAs (Class 1)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-50797:
Drosophila melanogaster Embryo Polysome with P/E and A/P tRNAs (Class 1)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-50798:
Drosophila melanogaster Embryo Polysome tRNA occupied (Class 1)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-50799:
Drosophila melanogaster Embryo Polysome with P/P and A/A tRNAs (Class 1)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-50800:
Drosophila melanogaster Embryo Polysome with E/E and P/P tRNAs (Class 1)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-50821:
Drosophila melanogaster Head 80S ribosome with P/P and A/A tRNAs (Class 1)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-50822:
Drosophila melanogaster Head 80S ribosome with P/P and A/A tRNAs (Class 2)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-50823:
Drosophila melanogaster Head 80S ribosome with P/P and A/A tRNAs (Class 3)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-50824:
Drosophila melanogaster Head 80S ribosome with P/E and A/P tRNAs (Class 1)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-50825:
Drosophila melanogaster Head 80S ribosome with P/P tRNA (Class 1)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-50826:
Drosophila melanogaster Head 80S vacant (Class 1)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-50827:
Drosophila melanogaster Head 80S ribosome with P/E, P/P and A/A tRNAs (average)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-50830:
Drosophila melanogaster Head 80S ribosome replicate with P/E and A/P tRNAs (Class 1)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-50831:
Drosophila melanogaster Head 80S ribosome replicate with P/P tRNA (Class 1)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-44770:
Tethered respiratory III2IV2 supercomplex from Saccharomyces cerevisiae
Method: single particle / : Eldeeb MH, Carlstrom A, Berndtsson J, Ott M, Fontanesi F

EMDB-44774:
Tethered respiratory III2IV2 supercomplex from Saccharomyces cerevisiae, CIVa local refinement
Method: single particle / : Eldeeb MH, Carlstrom A, Berndtsson J, Ott M, Fontanesi F

EMDB-44775:
Tethered respiratory III2IV2 supercomplex from Saccharomyces cerevisiae, CIVb local refinement
Method: single particle / : Eldeeb MH, Carlstrom A, Berndtsson J, Ott M, Fontanesi F

PDB-9bpb:
Tethered respiratory III2IV2 supercomplex from Saccharomyces cerevisiae
Method: single particle / : Eldeeb MH, Carlstrom A, Berndtsson J, Ott M, Fontanesi F

EMDB-19559:
Human mitochondrial ribosome from elatol treated HEK cells (no tRNA/mRNA bound)
Method: single particle / : Singh V, Barrientos A, Amunts A

EMDB-19560:
Human mitoribosome purified from elatol treated HEK cells (tRNAs/mRNA at partial occupancy)
Method: single particle / : Singh V, Barrientos A, Amunts A

EMDB-19717:
Cryo-EM structure of the C terminal region of PTX3 with a section of coiled-coil
Method: single particle / : Snee M, Shah A, Lockhart-Cairns M, Collins R, Levy C, Baldock C, Day A

PDB-8s50:
Cryo-EM structure of the C terminal region of PTX3 with a section of coiled-coil
Method: single particle / : Snee M, Shah A, Lockhart-Cairns M, Collins R, Levy C, Baldock C, Day A

EMDB-19474:
N.meningitidis NadV3 surface expressed homotrimeric antigen structure
Method: single particle / : Calvaresi V, Dello Iacono L, Borghi S, Luzzi E, Biolchi A, Benucci B, Ferlenghi I, Peschiera I, Giusti F, Fontana LE, Kan Z, Spinello Z, Merola M, Delany I, Rand KD, Norris N

EMDB-18137:
HK68 cryo-EM structure achieved via rapid-spray and vitrification for grid preparation
Method: single particle / : Debski-Antoniak O, Flynn A, Klebl PD, Tiede C, Muench S, Tomlinson D, Fontana J

EMDB-17725:
CryoEM reconstruction of Influenza A virus (HK68) hemagglutinin bound to an Affimer reagent
Method: single particle / : Debski-Antoniak O, Flynn A, Klebl PD, Tiede C, Muench S, Tomlinson D, Fontana J

EMDB-16407:
Human mitochondrial ribosome in complex with LRPPRC-SLIRP, A-site, P-site, E-site tRNAs and mRNA (focussed on SSU head)
Method: single particle / : Singh V, Itoh Y, Amunts A

EMDB-16408:
Human mitochondrial ribosome in complex with LRPPRC-SLIRP, A-site, P-site, E-site tRNAs and mRNA (focussed on SSU body)
Method: single particle / : Singh V, Itoh Y, Amunts A

EMDB-16409:
Human mitochondrial ribosome in complex with LRPPRC-SLIRP, A-site, P-site, E-site tRNAs and mRNA (masked refined on SSU tail)
Method: single particle / : Singh V, Itoh Y, Amunts A

EMDB-16410:
Human mitochondrial ribosome in complex with LRPPRC-SLIRP, A-site, P-site, E-site tRNAs and mRNA (focussed on LSU body)
Method: single particle / : Singh V, Itoh Y, Amunts A

EMDB-16411:
Human mitochondrial ribosome in complex with LRPPRC-SLIRP, A-site, P-site, E-site tRNAs and mRNA (focussed on L10/L12 stalk)
Method: single particle / : Singh V, Itoh Y, Amunts A

EMDB-16412:
Human mitochondrial ribosome in complex with LRPPRC-SLIRP, A-site, P-site, E-site tRNAs and mRNA (focussed on mS39-LRPPRC-SLIRP)
Method: single particle / : Singh V, Itoh Y, Amunts A

EMDB-16413:
Human mitochondrial ribosome in complex with LRPPRC-SLIRP, A-site, P-site, E-site tRNAs and mRNA (focussed on central protuberance)
Method: single particle / : Singh V, Itoh Y, Amunts A

EMDB-16414:
Human mitochondrial ribosome in complex with LRPPRC-SLIRP, A-site, P-site, E-site tRNAs and mRNA (consensus)
Method: single particle / : Singh V, Itoh Y, Amunts A

EMDB-17724:
CryoEM reconstruction of hemagglutinin HK68 of Influenza A virus bound to an Affimer reagent
Method: single particle / : Debski-Antoniak O, Flynn A, Klebl DP, Tiede C, Muench S, Tomlinson D, Fontana J

PDB-8pk3:
CryoEM reconstruction of hemagglutinin HK68 of Influenza A virus bound to an Affimer reagent
Method: single particle / : Debski-Antoniak O, Flynn A, Klebl DP, Tiede C, Muench S, Tomlinson D, Fontana J

EMDB-15544:
Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA
Method: single particle / : Singh V, Itoh Y, Amunts A

PDB-8any:
Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA
Method: single particle / : Singh V, Itoh Y, Amunts A

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more