[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 34 items for (author: atkinson & gc)

EMDB-19638:
YlmH bound to PtRNA-50S
Method: single particle / : Paternoga H, Dimitrova-Paternoga L, Wilson DN

EMDB-19641:
YlmH bound to stalled 50S subunits with RqcH and PtRNA
Method: single particle / : Paternoga H, Wilson DN

EMDB-16246:
ARE-ABCF VmlR2 bound to a 70S ribosome
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-15161:
Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.
Method: single particle / : Koller TO, Crowe-McAuliffe C, Wilson DN

EMDB-15175:
Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.
Method: single particle / : Koller TO, Crowe-McAuliffe C, Wilson DN

EMDB-15204:
Cryo-EM structure of Listeria monocytogenes 50S ribosomal subunit.
Method: single particle / : Koller TO, Crowe-McAuliffe C, Wilson DN

EMDB-15670:
Cryo-EM volume of HflX bound to the Listeria monocytogenes 50S ribosomal subunit
Method: single particle / : Koller TO, Crowe-McAuliffe C, Wilson DN

EMDB-15864:
Cryo-EM map of lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.
Method: single particle / : Koller TO, Crowe-McAuliffe C, Wilson DN

EMDB-13242:
PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-13241:
E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-13243:
PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state II
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-13244:
PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state III
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-13245:
E. faecalis 70S ribosome with P-tRNA, state IV
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-13191:
Staphylococcus aureus ribosome in complex with Sal(B)
Method: single particle / : Nicholson D, Ranson NA

EMDB-13017:
RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-12331:
LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis
Method: single particle / : Crowe-McAuliffe C, Kasari M

EMDB-12332:
VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus
Method: single particle / : Crowe-McAuliffe C, Murina V

EMDB-12333:
70S ribosome from Staphylococcus aureus
Method: single particle / : Crowe-McAuliffe C, Murina V

EMDB-12334:
VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
Method: single particle / : Crowe-McAuliffe C, Turnbull KJ

EMDB-11890:
Bacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH.
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-11891:
Bacillus subtilis ribosome-associated quality control complex state B, multibody refinement focussed on RqcH. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-11889:
Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-11913:
Bacillus subtilis ribosome-associated quality control complex, state C, derived from RqcH affinity purification.
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-11914:
Ribosome-associated quality control complex from Bacillus subtilis, state D. Large ribosomal subunit in complex with P-tRNA and RqcP/YabO.
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-11915:
Bacillus subtilis ribosome-associated quality control complex state B*, derived from RqcH affinity purification.
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-11916:
Bacillus subtilis ribosome-associated quality control complex, state E, derived from RqcP/YabO affinity purification.
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-11917:
Bacillus subtilis ribosome-associated quality control complex with SRP, derived from RqcP/YabO affinity purification.
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-11918:
Bacillus subtilis ribosome-associated quality control complex, state D, derived from RqcP/YabO affinity purification.
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-11919:
Bacillus subtilis ribosome-associated quality control complex, state B, derived from RqcP/YabO affinity purification.
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-11920:
Bacillus subtilis ribosome-associated quality control complex with RsfS, derived from RqcP/YabO affinity purification.
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-10098:
Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
Method: single particle / : Kasari V, Pochopien AA

EMDB-0176:
Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
Method: single particle / : Crowe-McAuliffe C, Graf M

EMDB-0177:
Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome
Method: single particle / : Crowe-McAuliffe C, Graf M

EMDB-5562:
tetracycline resistance protein Tet(O) bound to the ribosome
Method: single particle / : Li W, Atkinson GC, Thakor NS, Allas U, Lu C, Chan KY, Tenson T, Schulten K, Wilson KS, Hauryliuk V, Frank J

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more