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- EMDB-21562: MultiBody Refinement of 70S Ribosome from Enterococcus faecalis -

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Basic information

Entry
Database: EMDB / ID: EMD-21562
TitleMultiBody Refinement of 70S Ribosome from Enterococcus faecalis
Map dataMultiBody refinement of 70S Ribosome Enterococcus faecalis: the bodies have been stitched together
Sample
  • Complex: 70S ribosome
    • RNA: x 3 types
    • Protein or peptide: x 44 types
  • Ligand: x 1 types
Keywords70S / ribosome / pathogen / antibiotic development / antibiotic resistant
Function / homology
Function and homology information


large ribosomal subunit / transferase activity / ribosomal small subunit biogenesis / small ribosomal subunit / small ribosomal subunit rRNA binding / 5S rRNA binding / ribosomal large subunit assembly / cytosolic small ribosomal subunit / large ribosomal subunit rRNA binding / cytosolic large ribosomal subunit ...large ribosomal subunit / transferase activity / ribosomal small subunit biogenesis / small ribosomal subunit / small ribosomal subunit rRNA binding / 5S rRNA binding / ribosomal large subunit assembly / cytosolic small ribosomal subunit / large ribosomal subunit rRNA binding / cytosolic large ribosomal subunit / cytoplasmic translation / tRNA binding / negative regulation of translation / rRNA binding / ribosome / structural constituent of ribosome / translation / ribonucleoprotein complex / mRNA binding / RNA binding / zinc ion binding / cytosol / cytoplasm
Similarity search - Function
Type-1 KH domain profile. / : / Ribosomal protein S14, type Z / Ribosomal protein L16 signature 1. / Ribosomal protein L16, conserved site / Ribosomal protein L16 signature 2. / Ribosomal protein L6, conserved site / Ribosomal protein L6 signature 1. / : / Ribosomal protein L17 signature. ...Type-1 KH domain profile. / : / Ribosomal protein S14, type Z / Ribosomal protein L16 signature 1. / Ribosomal protein L16, conserved site / Ribosomal protein L16 signature 2. / Ribosomal protein L6, conserved site / Ribosomal protein L6 signature 1. / : / Ribosomal protein L17 signature. / Ribosomal protein L36 signature. / Ribosomal protein L28/L24 superfamily / Ribosomal protein L32p, bacterial type / Ribosomal protein L33, conserved site / Ribosomal protein L33 signature. / Ribosomal protein L35, conserved site / Ribosomal protein L35 signature. / : / Ribosomal protein L28 / Ribosomal protein L35, non-mitochondrial / Ribosomal protein L5, bacterial-type / Ribosomal protein L18, bacterial-type / : / Ribosomal protein L6, bacterial-type / Ribosomal protein S3, bacterial-type / Ribosomal protein S13, bacterial-type / Ribosomal protein S7, bacterial/organellar-type / Ribosomal protein S9, bacterial/plastid / Ribosomal protein S11, bacterial-type / Ribosomal protein S20 / Ribosomal protein S20 superfamily / Ribosomal protein S20 / Ribosomal protein L36 / Ribosomal protein L36 superfamily / Ribosomal protein L36 / Ribosomal protein S4, bacterial-type / Ribosomal protein S14/S29 / Ribosomal protein L19, conserved site / 30S ribosomal protein S17 / Ribosomal protein L19 signature. / Ribosomal protein S5, bacterial-type / Ribosomal protein L27, conserved site / Ribosomal protein L27 signature. / Ribosomal protein S6, plastid/chloroplast / Ribosomal protein L20 signature. / Ribosomal protein L22, bacterial/chloroplast-type / Ribosomal protein L14P, bacterial-type / Ribosomal protein L34, conserved site / Ribosomal protein L34 signature. / Ribosomal protein L2, bacterial/organellar-type / Ribosomal protein L35 / Ribosomal protein L35 superfamily / Ribosomal protein L35 / Ribosomal protein L33 / Ribosomal protein L33 / Ribosomal L28 family / Ribosomal protein L33 superfamily / Ribosomal protein L16 / Ribosomal protein L28/L24 / Ribosomal protein L18 / Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast / Ribosomal protein S18, conserved site / Ribosomal protein S18 signature. / Ribosomal protein L30, bacterial-type / Ribosomal protein S16 / Ribosomal protein S16 domain superfamily / Ribosomal protein S16 / : / L28p-like / Ribosomal protein S15, bacterial-type / Ribosomal protein L27 / Ribosomal L27 protein / Ribosomal protein S6 / Ribosomal protein S6 / Ribosomal protein S6 superfamily / Ribosomal protein L20 / Ribosomal protein S12, bacterial-type / Ribosomal L32p protein family / Ribosomal protein L19 / Ribosomal protein L19 / Ribosomal protein L20 / Ribosomal protein L20, C-terminal / Ribosomal protein L19 superfamily / Ribosomal protein L21 / Ribosomal protein L17 / Ribosomal protein L32p / Ribosomal protein L17 superfamily / Ribosomal protein L17 / Ribosomal proteins 50S L24/mitochondrial 39S L24 / Translation elongation factor EF1B/ribosomal protein S6 / Ribosomal protein L21-like / L21-like superfamily / Ribosomal prokaryotic L21 protein / Ribosomal protein L24 / Ribosomal protein S18 / Ribosomal protein S18 / Ribosomal protein L34 / Ribosomal protein L34 / Ribosomal protein L13, bacterial-type / Ribosomal protein S18 superfamily
Similarity search - Domain/homology
Small ribosomal subunit protein bS18 / Small ribosomal subunit protein bS6 / Small ribosomal subunit protein uS7 / Small ribosomal subunit protein uS12 / Large ribosomal subunit protein uL3 / Small ribosomal subunit protein uS10 / Large ribosomal subunit protein uL2 / Large ribosomal subunit protein uL23 / Small ribosomal subunit protein uS3 / Large ribosomal subunit protein uL14 ...Small ribosomal subunit protein bS18 / Small ribosomal subunit protein bS6 / Small ribosomal subunit protein uS7 / Small ribosomal subunit protein uS12 / Large ribosomal subunit protein uL3 / Small ribosomal subunit protein uS10 / Large ribosomal subunit protein uL2 / Large ribosomal subunit protein uL23 / Small ribosomal subunit protein uS3 / Large ribosomal subunit protein uL14 / Large ribosomal subunit protein uL5 / Small ribosomal subunit protein uS17 / Small ribosomal subunit protein uS8 / Large ribosomal subunit protein uL18 / Small ribosomal subunit protein uS14 / Large ribosomal subunit protein uL15 / Large ribosomal subunit protein uL22 / Small ribosomal subunit protein uS13 / Large ribosomal subunit protein bL36 / Large ribosomal subunit protein uL16 / Large ribosomal subunit protein uL6 / Large ribosomal subunit protein uL4 / Large ribosomal subunit protein uL29 / Small ribosomal subunit protein uS11 / Large ribosomal subunit protein uL24 / Small ribosomal subunit protein uS5 / Large ribosomal subunit protein uL30 / Large ribosomal subunit protein bL17 / Large ribosomal subunit protein bL35 / Large ribosomal subunit protein bL20 / Large ribosomal subunit protein bL27 / Large ribosomal subunit protein bL21 / Large ribosomal subunit protein bL32 / Small ribosomal subunit protein bS16 / Large ribosomal subunit protein bL19 / Small ribosomal subunit protein bS20 / Large ribosomal subunit protein bL33 / Small ribosomal subunit protein uS4 / Small ribosomal subunit protein uS15 / Large ribosomal subunit protein bL28 / Small ribosomal subunit protein uS9 / Large ribosomal subunit protein uL13 / Large ribosomal subunit protein bL34 / :
Similarity search - Component
Biological speciesEnterococcus faecalis OG1RF (bacteria)
Methodsingle particle reconstruction / cryo EM / Resolution: 2.9 Å
AuthorsJogl G / Khayat R
Funding support United States, 2 items
OrganizationGrant numberCountry
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)GM094157 United States
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)G12MD007603 United States
CitationJournal: Sci Rep / Year: 2020
Title: Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis.
Authors: Eileen L Murphy / Kavindra V Singh / Bryant Avila / Torsten Kleffmann / Steven T Gregory / Barbara E Murray / Kurt L Krause / Reza Khayat / Gerwald Jogl /
Abstract: Enterococcus faecalis is a gram-positive organism responsible for serious infections in humans, but as with many bacterial pathogens, resistance has rendered a number of commonly used antibiotics ...Enterococcus faecalis is a gram-positive organism responsible for serious infections in humans, but as with many bacterial pathogens, resistance has rendered a number of commonly used antibiotics ineffective. Here, we report the cryo-EM structure of the E. faecalis 70S ribosome to a global resolution of 2.8 Å. Structural differences are clustered in peripheral and solvent exposed regions when compared with Escherichia coli, whereas functional centres, including antibiotic binding sites, are similar to other bacterial ribosomes. Comparison of intersubunit conformations among five classes obtained after three-dimensional classification identifies several rotated states. Large ribosomal subunit protein bL31, which forms intersubunit bridges to the small ribosomal subunit, assumes different conformations in the five classes, revealing how contacts to the small subunit are maintained throughout intersubunit rotation. A tRNA observed in one of the five classes is positioned in a chimeric pe/E position in a rotated ribosomal state. The 70S ribosome structure of E. faecalis now extends our knowledge of bacterial ribosome structures and may serve as a basis for the development of novel antibiotic compounds effective against this pathogen.
History
DepositionMar 17, 2020-
Header (metadata) releaseOct 14, 2020-
Map releaseOct 14, 2020-
UpdateMar 6, 2024-
Current statusMar 6, 2024Processing site: RCSB / Status: Released

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Structure visualization

Movie
  • Surface view with section colored by density value
  • Surface level: 0.035
  • Imaged by UCSF Chimera
  • Download
  • Surface view colored by height
  • Surface level: 0.035
  • Imaged by UCSF Chimera
  • Download
  • Surface view with fitted model
  • Atomic models: PDB-6w6p
  • Surface level: 0.035
  • Imaged by UCSF Chimera
  • Download
Movie viewer
Structure viewerEM map:
SurfViewMolmilJmol/JSmol
Supplemental images

emd_21562.png

Downloads & links

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Map

FileDownload / File: emd_21562.map.gz / Format: CCP4 / Size: 325 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
AnnotationMultiBody refinement of 70S Ribosome Enterococcus faecalis: the bodies have been stitched together
Projections & slices

Image control

Size
Brightness
Contrast
Others
AxesZ (Sec.)Y (Row.)X (Col.)
1.1 Å/pix.
x 440 pix.
= 482.68 Å		1.1 Å/pix.
x 440 pix.
= 482.68 Å		1.1 Å/pix.
x 440 pix.
= 482.68 Å

Surface

Projections

Slices (1/3)

Slices (1/2)

Slices (2/3)

Images are generated by Spider.

Voxel sizeX=Y=Z: 1.097 Å
Density

Histogram

Histogram (log scale)
Contour LevelBy AUTHOR: 0.035 / Movie #1: 0.035
Minimum - Maximum-0.019343046 - 0.2261516
Average (Standard dev.)0.0034019458 (±0.0071898615)
SymmetrySpace group: 1
Details

EMDB XML:

Map geometry
Axis orderXYZ
Origin000
Dimensions440440440
Spacing440440440
CellA=B=C: 482.68 Å
α=β=γ: 90.0 °

CCP4 map header:

modeImage stored as Reals
Å/pix. X/Y/Z1.0971.0971.097
M x/y/z440440440
origin x/y/z0.0000.0000.000
length x/y/z482.680482.680482.680
α/β/γ90.00090.00090.000
start NX/NY/NZ000
NX/NY/NZ161186271
MAP C/R/S123
start NC/NR/NS000
NC/NR/NS440440440
D min/max/mean-0.0190.2260.003

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Supplemental data

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Additional map: 50S subunit of 70S Ribosome Enterococcus faecalis MultiBody...

Fileemd_21562_additional_1.map
Annotation50S subunit of 70S Ribosome Enterococcus faecalis MultiBody refinement
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

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Additional map: 30S subunit (body) of 70S Ribosome Enterococcus faecalis...

Fileemd_21562_additional_2.map
Annotation30S subunit (body) of 70S Ribosome Enterococcus faecalis MultiBody refinement
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

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Additional map: 30S subunit (head) of 70S Ribosome Enterococcus faecalis...

Fileemd_21562_additional_3.map
Annotation30S subunit (head) of 70S Ribosome Enterococcus faecalis MultiBody refinement
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

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Sample components

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Entire : 70S ribosome

EntireName: 70S ribosome
Components
  • Complex: 70S ribosome
    • RNA: 16S rRNA
    • Protein or peptide: 30S ribosomal protein S3
    • Protein or peptide: 30S ribosomal protein S4
    • Protein or peptide: 30S ribosomal protein S5
    • Protein or peptide: 30S ribosomal protein S6
    • Protein or peptide: 30S ribosomal protein S7
    • Protein or peptide: 30S ribosomal protein S8
    • Protein or peptide: 30S ribosomal protein S9
    • Protein or peptide: 30S ribosomal protein S10
    • Protein or peptide: 30S ribosomal protein S11
    • Protein or peptide: 30S ribosomal protein S12
    • Protein or peptide: 30S ribosomal protein S13
    • Protein or peptide: 30S ribosomal protein S14 type Z
    • Protein or peptide: 30S ribosomal protein S15
    • Protein or peptide: 30S ribosomal protein S16
    • Protein or peptide: 30S ribosomal protein S17
    • Protein or peptide: 30S ribosomal protein S18
    • Protein or peptide: 30S ribosomal protein S19
    • Protein or peptide: 30S ribosomal protein S20
    • RNA: 23S rRNA
    • RNA: 5S rRNA
    • Protein or peptide: 50S ribosomal protein L2
    • Protein or peptide: 50S ribosomal protein L3
    • Protein or peptide: 50S ribosomal protein L4
    • Protein or peptide: 50S ribosomal protein L5
    • Protein or peptide: 50S ribosomal protein L6
    • Protein or peptide: 50S ribosomal protein L13
    • Protein or peptide: 50S ribosomal protein L14
    • Protein or peptide: 50S ribosomal protein L15
    • Protein or peptide: 50S ribosomal protein L16
    • Protein or peptide: 50S ribosomal protein L17
    • Protein or peptide: 50S ribosomal protein L18
    • Protein or peptide: 50S ribosomal protein L19
    • Protein or peptide: 50S ribosomal protein L20
    • Protein or peptide: 50S ribosomal protein L21
    • Protein or peptide: 50S ribosomal protein L22
    • Protein or peptide: 50S ribosomal protein L23
    • Protein or peptide: 50S ribosomal protein L24
    • Protein or peptide: 50S ribosomal protein L27
    • Protein or peptide: 50S ribosomal protein L28
    • Protein or peptide: 50S ribosomal protein L29
    • Protein or peptide: 50S ribosomal protein L30
    • Protein or peptide: 50S ribosomal protein L32
    • Protein or peptide: 50S ribosomal protein L33
    • Protein or peptide: 50S ribosomal protein L34
    • Protein or peptide: 50S ribosomal protein L35
    • Protein or peptide: 50S ribosomal protein L36
  • Ligand: ZINC ION

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Supramolecule #1: 70S ribosome

SupramoleculeName: 70S ribosome / type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1-#47
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 2.5 MDa

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Macromolecule #1: 16S rRNA

MacromoleculeName: 16S rRNA / type: rna / ID: 1 / Number of copies: 1
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 501.090781 KDa
SequenceString: UGAGAGUUUG AUCCUGGCUC AGGACGAACG CUGGCGGCGU GCCUAAUACA UGCAAGUCGA ACGCUUCUUU CCUCCCGAGU GCUUGCACU CAAUUGGAAA GAGGAGUGGC GGACGGGUGA GUAACACGUG GGUAACCUAC CCAUCAGAGG GGGAUAACAC U UGGAAACA ...String:
UGAGAGUUUG AUCCUGGCUC AGGACGAACG CUGGCGGCGU GCCUAAUACA UGCAAGUCGA ACGCUUCUUU CCUCCCGAGU GCUUGCACU CAAUUGGAAA GAGGAGUGGC GGACGGGUGA GUAACACGUG GGUAACCUAC CCAUCAGAGG GGGAUAACAC U UGGAAACA GGUGCUAAUA CCGCAUAACA GUUUAUGCCG CAUGGCAUAA GAGUGAAAGG CGCUUUCGGG UGUCGCUGAU GG AUGGACC CGCGGUGCAU UAGCUAGUUG GUGAGGUAAC GGCUCACCAA GGCCACGAUG CAUAGCCGAC CUGAGAGGGU GAU CGGCCA CACUGGGACU GAGACACGGC CCAGACUCCU ACGGGAGGCA GCAGUAGGGA AUCUUCGGCA AUGGACGAAA GUCU GACCG AGCAACGCCG CGUGAGUGAA GAAGGUUUUC GGAUCGUAAA ACUCUGUUGU UAGAGAAGAA CAAGGACGUU AGUAA CUGA ACGUCCCCUG ACGGUAUCUA ACCAGAAAGC CACGGCUAAC UACGUGCCAG CAGCCGCGGU AAUACGUAGG UGGCAA GCG UUGUCCGGAU UUAUUGGGCG UAAAGCGAGC GCAGGCGGUU UCUUAAGUCU GAUGUGAAAG CCCCCGGCUC AACCGGG GA GGGUCAUUGG AAACUGGGAG ACUUGAGUGC AGAAGAGGAG AGUGGAAUUC CAUGUGUAGC GGUGAAAUGC GUAGAUAU A UGGAGGAACA CCAGUGGCGA AGGCGGCUCU CUGGUCUGUA ACUGACGCUG AGGCUCGAAA GCGUGGGGAG CAAACAGGA UUAGAUACCC UGGUAGUCCA CGCCGUAAAC GAUGAGUGCU AAGUGUUGGA GGGUUUCCGC CCUUCAGUGC UGCAGCAAAC GCAUUAAGC ACUCCGCCUG GGGAGUACGA CCGCAAGGUU GAAACUCAAA GGAAUUGACG GGGGCCCGCA CAAGCGGUGG A GCAUGUGG UUUAAUUCGA AGCAACGCGA AGAACCUUAC CAGGUCUUGA CAUCCUUUGA CCACUCUAGA GAUAGAGCUU UC CCUUCGG GGACAAAGUG ACAGGUGGUG CAUGGUUGUC GUCAGCUCGU GUCGUGAGAU GUUGGGUUAA GUCCCGCAAC GAG CGCAAC CCUUAUUGUU AGUUGCCAUC AUUUAGUUGG GCACUCUAGC GAGACUGCCG GUGACAAACC GGAGGAAGGU GGGG AUGAC GUCAAAUCAU CAUGCCCCUU AUGACCUGGG CUACACACGU GCUACAAUGG GAAGUACAAC GAGUCGCUAG ACCGC GAGG UCAUGCAAAU CUCUUAAAGC UUCUCUCAGU UCGGAUUGCA GGCUGCAACU CGCCUGCAUG AAGCCGGAAU CGCUAG UAA UCGCGGAUCA GCACGCCGCG GUGAAUACGU UCCCGGGCCU UGUACACACC GCCCGUCACA CCACGAGAGU UUGUAAC AC CCGAAGUCGG UGAGGUAACC UUUUUGGAGC CAGCCGCCUA AGGUGGGAUA GAUGAUUGGG GUGAAGUCGU AACAAGGU A GCCGUAUCGG AAGGUGCGGC UGGAUCA

GENBANK: GENBANK: CP002621.1

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Macromolecule #20: 23S rRNA

MacromoleculeName: 23S rRNA / type: rna / ID: 20 / Number of copies: 1
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 942.67575 KDa
SequenceString: UUAAGUGAAU AAGGGCGCAC GGUGGAUGCC UUGGCACUAG GAGCCGAUGA AGGACGGGAC UAACACCGAU AUGCUUUGGG GAGCUGUAA GUAAGCUAUG AUCCAGAGAU UUCCGAAUGG GGGAACCCAA UAUCUUUUAU AGGAUAUUAC UUUUCAGUGA A UACAUAGC ...String:
UUAAGUGAAU AAGGGCGCAC GGUGGAUGCC UUGGCACUAG GAGCCGAUGA AGGACGGGAC UAACACCGAU AUGCUUUGGG GAGCUGUAA GUAAGCUAUG AUCCAGAGAU UUCCGAAUGG GGGAACCCAA UAUCUUUUAU AGGAUAUUAC UUUUCAGUGA A UACAUAGC UGAUUAGAGG UAGACGCAGA GAACUGAAAC AUCUUAGUAC CUGCAGGAAG AGAAAGAAAA UUCGAUUCCC UG AGUAGCG GCGAGCGAAA CGGGAAGAGC CCAAACCAAC AAGCUUGCUU GUUGGGGUUG UAGGACUCCG AUAUGGUAGU CUG UUAGUA UAGUUGAAGG AUUUGGAAAA UUCCGCUAAA GAGGGUGAAA GCCCCGUAGA CGAAAUGCUG ACAACACCUA GGAG GAUCC UGAGUACGGC GGAACACGAG AAAUUCCGUC GGAAUCCGCG GGGACCAUCC CGCAAGGCUA AAUACUCCCU AGUGA CCGA UAGUGAACCA GUACCGUGAG GGAAAGGUGA AAAGCACCCC GGAAGGGGAG UGAAAUAGAU CCUGAAACCG UGUGCC UAC AACAAGUCAA AGCUCGUUAA UGAGUGAUGG CGUGCCUUUU GUAGAAUGAA CCGGCGAGUU ACGAUUGCAU GCGAGGU UA AGUCGAAGAG ACGGAGCCGC AGCGAAAGCG AGUCUGAAUA GGGCGAAUGA GUAUGUAGUC GUAGACCCGA AACCAUGU G AUCUACCCAU GUCCAGGUUG AAGGUGCGGU AAAACGCACU GGAGGACCGA ACCCACGUAC GUUGAAAAGU GCGGGGAUG AGGUGUGGGU AGCGGAGAAA UUCCAAACGA ACUUGGAGAU AGCUGGUUCU CUCCGAAAUA GCUUUAGGGC UAGCCUCGGA AUUGAGAAU GAUGGAGGUA GAGCACUGUU UGGACUAGGG GCCCAUCUCG GGUUACCGAA UUCAGAUAAA CUCCGAAUGC C AUUCAUUU AUAUCCGGGA GUCAGACUGC GAGUGAUAAG AUCCGUAGUC GAAAGGGAAA CAGCCCAGAC CACCAGCUAA GG UCCCAAA AUAUAUGUUA AGUGGAAAAG GAUGUGGGGU UGCACAGACA ACUAGGAUGU UGGCUUAGAA GCAGCCACCA UUU AAAGAG UGCGUAAUAG CUCACUAGUC GAGUGACCCU GCGCCGAAAA UGUACCGGGG CUAAACAUAU UACCGAAGCU GUGG ACUAC ACCAUUAGGU GUAGUGGUAG GAGAGCGUUC UAAGGGCGUU GAAGGUCGAU CGUGAGGACG GCUGGAGCGC UUAGA AGUG AGAAUGCCGG UAUGAGUAGC GAAAGACAGG UGAGAAUCCU GUCCACCGUA UGACUAAGGU UUCCUGGGGA AGGCUC GUC CGCCCAGGGU UAGUCGGGAC CUAAGCCGAG GCCGAUAGGC GUAGGCGAUG GACAACAGGU UGAUAUUCCU GUACCAG UU GUUUUUGUUU GAGCAAUGGA GGGACGCAGU AGGCUAAGGA AUGCAUGCGA UUGGAAGUGC AUGUCCAAGC AAUGAGUC U UGAGUAGAGU UAAAUGCUUU ACUCUUUAAG GACAAGUUGU GACGGGGAGC GAAAUAAUAG UAGCGAAGUU CCUGACGUC ACACUGCCAA GAAAAGCUUC UAGUGAGAAA ACAACUGCCC GUACCGUAAA CCGACACAGG UAGUCGAGGA GAGUAUCCUA AGGUGAGCG AGCGAACUCU CGUUAAGGAA CUCGGCAAAA UGACCCCGUA ACUUCGGGAG AAGGGGUGCU GACUUCGGUC A GCCGCAGU GAAUAGGCCC AAGCGACUGU UUAUCAAAAA CACAGGUCUC UGCAAAAUCG UAAGAUGAAG UAUAGGGGCU GA CGCCUGC CCGGUGCUGG AAGGUUAAGA GGAUGGGUUA GCUUCGGCGA AGCUCAGAAU UGAAGCCCCA GUAAACGGCG GCC GUAACU AUAACGGUCC UAAGGUAGCG AAAUUCCUUG UCGGGUAAGU UCCGACCCGC ACGAAAGGCG UAACGAUUUG GGCA CUGUC UCAACGAGAG ACUCGGUGAA AUUUUAGUAC CUGUGAAGAU GCAGGUUACC CGCGACAGGA CGGAAAGACC CCAUG GAGC UUUACUGUAG UUUGAUAUUG AGUGUUUGUA CCACAUGUAC AGGAUAGGUA GGAGCCGAUG AGACCGGAAC GCUAGU UUC GGAGGAGGCG CUGGUGGGAU ACUACCCUUG UGUUAUGAAC CCUCUAACCC GCACCACUAA UCGUGGUGGG AGACAGU GU CAGAUGGGCA GUUUGACUGG GGCGGUCGCC UCCUAAAAGG UAACGGAGGC GCCCAAAGGU UCCCUCAGAA UGGUUGGA A AUCAUUCGAA GAGUGUAAAG GCAGAAGGGA GCUUGACUGC GAGACCUACA AGUCGAGCAG GGACGAAAGU CGGGCUUAG UGAUCCGGUG GUUCCGCAUG GAAGGGCCAU CGCUCAACGG AUAAAAGCUA CCCUGGGGAU AACAGGCUUA UCUCCCCCAA GAGUCCACA UCGACGGGGA GGUUUGGCAC CUCGAUGUCG GCUCGUCGCA UCCUGGGGCU GUAGUCGGUC CCAAGGGUUG G GCUGUUCG CCCAUUAAAG CGGCACGCGA GCUGGGUUCA GAACGUCGUG AGACAGUUCG GUCCCUAUCC GUCGCGGGCG UU GGAAAUU UGAGAGGAGC UGUCCUUAGU ACGAGAGGAC CGGGAUGGAC UUACCGCUGG UGUACCAGUU GUUCUGCCAA GGG CAUUGC UGGGUAGCUA UGUAGGGAAG GGAUAAACGC UGAAAGCAUC UAAGUGUGAA GCCCACCUCA AGAUGAGAUU UCCC AUUUC UUUAAGAAAG UAAGACCCCU GAGAGAUGAU CAGGUAGAUA GGUUGGAAGU GGAAGGCUAG UGAUAGUUGG AGCGG ACCA AUACUAAUCG GUCGAGGACU UAAC

GENBANK: GENBANK: CP002621.1

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Macromolecule #21: 5S rRNA

MacromoleculeName: 5S rRNA / type: rna / ID: 21 / Number of copies: 1
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 37.433188 KDa
SequenceString:
UGUGGUGGCG AUAGCGAGAA GGAUACACCU GUUCCCAUGC CGAACACAGA AGUUAAGCUU CUUAGCGCCG AUUGUAGUGA AGGGUUUCC CUUUGUGAGA GUAGGACGUC GCCACGC

GENBANK: GENBANK: CP002621.1

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Macromolecule #2: 30S ribosomal protein S3

MacromoleculeName: 30S ribosomal protein S3 / type: protein_or_peptide / ID: 2 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 22.884309 KDa
SequenceString: GQKVHPIGMR VGIIRDWDAK WYAEKEYAEF LHEDLRIRKF IATKLADAAV STIEIERAAN RVNISIHTAK PGMVIGKGGS EVENLRKEL NKLTGKRVHI NIVEIKKPDL DAKLVGEGIA RQLENRVAFR RAQKQAIQRA MRAGAKGIKT QVSGRLNGAD I ARSEGYSE ...String:
GQKVHPIGMR VGIIRDWDAK WYAEKEYAEF LHEDLRIRKF IATKLADAAV STIEIERAAN RVNISIHTAK PGMVIGKGGS EVENLRKEL NKLTGKRVHI NIVEIKKPDL DAKLVGEGIA RQLENRVAFR RAQKQAIQRA MRAGAKGIKT QVSGRLNGAD I ARSEGYSE GTVPLHTLRA DIDYAWEEAD TTYGKLGVKV WIYRGE

UniProtKB: Small ribosomal subunit protein uS3

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Macromolecule #3: 30S ribosomal protein S4

MacromoleculeName: 30S ribosomal protein S4 / type: protein_or_peptide / ID: 3 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 23.029299 KDa
SequenceString: SRYTGPSWKV SRRLGISLSG TGKELARRPY KPGQHGPNSR GKVSEYGMQL TEKQKLRHMY GMNERQFRTL FIKASKIKEG KHGVNFMVL LEQRLDNVVY RLGLATTRRQ ARQLVNHGHI TVDGKRVDIP SYHVEVGQVI GVREKSQNIS TIKEAVEATV G RPAFVSFD ...String:
SRYTGPSWKV SRRLGISLSG TGKELARRPY KPGQHGPNSR GKVSEYGMQL TEKQKLRHMY GMNERQFRTL FIKASKIKEG KHGVNFMVL LEQRLDNVVY RLGLATTRRQ ARQLVNHGHI TVDGKRVDIP SYHVEVGQVI GVREKSQNIS TIKEAVEATV G RPAFVSFD TEKLEGSFTR LPERDELYPE IDEALVVEYY NQK

UniProtKB: Small ribosomal subunit protein uS4

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Macromolecule #4: 30S ribosomal protein S5

MacromoleculeName: 30S ribosomal protein S5 / type: protein_or_peptide / ID: 4 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 17.156979 KDa
SequenceString:
YIDPKHLELE DRVVAINRVT KVVKGGRRLR FAALVVVGDK NGHVGFGTGK AQEVPEAIRK AIEDAKKNLV EVPMVGSTIP HEVIGVFGG GRILMKPAVE GSGVAAGGPV RAVLELAGVA DITSKSLGSN TPINVVRATV EGLKQLKRAE EVAALRGKSV E EII

UniProtKB: Small ribosomal subunit protein uS5

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Macromolecule #5: 30S ribosomal protein S6

MacromoleculeName: 30S ribosomal protein S6 / type: protein_or_peptide / ID: 5 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 11.331838 KDa
SequenceString:
QDTKYEIMYI IRPNIDEEAK TALVERFDTI LKDNGAEVIE SKDWEKRRLA YEMNGFREGI YHIVNVTSPS TAGAINEFDR LAKINDDII RHMIVKVE

UniProtKB: Small ribosomal subunit protein bS6

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Macromolecule #6: 30S ribosomal protein S7

MacromoleculeName: 30S ribosomal protein S7 / type: protein_or_peptide / ID: 6 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 17.547219 KDa
SequenceString:
PRKGPVAKRD VLPDPIYNSK LVTRLINRVM VDGKRGIAAN IIYNSFDIIK ESTGNDPLEV FEQAMKNVMP VLEVKARRVG GSNYQVPVE VRPERRTTLG LRWVVNYARL RGEHTMEERL AKEIMDAANN TGASVKKRED THKMADANRA FAHYR

UniProtKB: Small ribosomal subunit protein uS7

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Macromolecule #7: 30S ribosomal protein S8

MacromoleculeName: 30S ribosomal protein S8 / type: protein_or_peptide / ID: 7 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 14.805198 KDa
SequenceString:
VMTDPIADFL TRIRNANMVK HETLEVPASK IKRDIAEILK REGFIRDVEY IEDDKQGVIR VFLKYGKNEE RVITNLKRIS KPGLRAYVK ADEVPKVLNG LGIAIISTSE GVITDKEARA KNIGGEVIAY VW

UniProtKB: Small ribosomal subunit protein uS8

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Macromolecule #8: 30S ribosomal protein S9

MacromoleculeName: 30S ribosomal protein S9 / type: protein_or_peptide / ID: 8 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 14.069206 KDa
SequenceString:
QVQYSGTGRR KNAVARVRLV PGTGKITVNK KDVEEYIPHA DLREVINQPF GVTETKGAYD VIVNVNGGGY AGQSGAIRHG IARALLQVD PDFRSALKRA GLLTRDARMV ERKKPGLKKA RKASQFSKR

UniProtKB: Small ribosomal subunit protein uS9

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Macromolecule #9: 30S ribosomal protein S10

MacromoleculeName: 30S ribosomal protein S10 / type: protein_or_peptide / ID: 9 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 11.400286 KDa
SequenceString:
QKIRIRLKAY EHRILDQSAD KIVETAKRTG ADVSGPIPLP TERSLYTVIR ATHKYKDSRE QFEMRTHKRL IDIVNPTPKT VDALMKLDL PSGVNIEIKL

UniProtKB: Small ribosomal subunit protein uS10

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Macromolecule #10: 30S ribosomal protein S11

MacromoleculeName: 30S ribosomal protein S11 / type: protein_or_peptide / ID: 10 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 12.3221 KDa
SequenceString:
KKNIESGVAH IHSTFNNTIV MITDTHGNAL AWSSAGSLGF KGSKKSTPFA AQMAAEAATK VAMEHGLKTV DVTVKGPGSG REAAIRSLQ ATGLEVTAIR DVTPVPHNGC RPPKRRRV

UniProtKB: Small ribosomal subunit protein uS11

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Macromolecule #11: 30S ribosomal protein S12

MacromoleculeName: 30S ribosomal protein S12 / type: protein_or_peptide / ID: 11 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 15.178622 KDa
SequenceString:
PTINQLVRKP RKSKVEKSDS PALNKGYNSF KKTQTNVNSP QKRGVCTRVG TMTPKKPNSA LRKYARVRLS NLIEVTAYIP GIGHNLQEH SVVLLRGGRV KDLPGVRYHI VRGALDTAGV NDRKQSRSKY GTKRPKA

UniProtKB: Small ribosomal subunit protein uS12

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Macromolecule #12: 30S ribosomal protein S13

MacromoleculeName: 30S ribosomal protein S13 / type: protein_or_peptide / ID: 12 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 12.619492 KDa
SequenceString:
ARIAGVDIPR DKRVVVSLTY IYGIGNTTAK KVLANVGVSE DVRVRDLTNE QTDAIRAEID KLKVEGDLRR EVNLNIKRLM EIGSYRGIR HRRGLPTRGQ NTKNNARTRK GPT

UniProtKB: Small ribosomal subunit protein uS13

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Macromolecule #13: 30S ribosomal protein S14 type Z

MacromoleculeName: 30S ribosomal protein S14 type Z / type: protein_or_peptide / ID: 13 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 7.041397 KDa
SequenceString:
AKKSMIAKNK RPAKHSTQAY TRCERCGRPH SVYRKFHLCR ICFRELAYKG QIPGVKKASW

UniProtKB: Small ribosomal subunit protein uS14

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Macromolecule #14: 30S ribosomal protein S15

MacromoleculeName: 30S ribosomal protein S15 / type: protein_or_peptide / ID: 14 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 10.537042 KDa
SequenceString:
AISQERKNEI IKEYARHEGD TGSPEVQIAV LTEDINQLNE HARTHKKDHH SYRGLMKKIG HRRNLLAYLR KTDIQRYREL IQRLGLRR

UniProtKB: Small ribosomal subunit protein uS15

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Macromolecule #15: 30S ribosomal protein S16

MacromoleculeName: 30S ribosomal protein S16 / type: protein_or_peptide / ID: 15 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 10.095773 KDa
SequenceString:
AVKIRLKRMG SKKSPFYRIV VADSRSPRDG RFIETVGTYN PLKDPAEVVL KEDLVLDWLS KGAQPSDTVR NILSKEGVMK KHHEAKNVK

UniProtKB: Small ribosomal subunit protein bS16

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Macromolecule #16: 30S ribosomal protein S17

MacromoleculeName: 30S ribosomal protein S17 / type: protein_or_peptide / ID: 16 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 9.74437 KDa
SequenceString:
ERNQRKVYQG RVVSDKMDKT ITVVVETKKN HPIYGKRMKY SKKYKAHDEN NTAKVGDIVK IMETRPLSAT KRFRLLEVVE EAV

UniProtKB: Small ribosomal subunit protein uS17

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Macromolecule #17: 30S ribosomal protein S18

MacromoleculeName: 30S ribosomal protein S18 / type: protein_or_peptide / ID: 17 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 7.646979 KDa
SequenceString:
KVDYIAANHI EYIDYKDTEL LKRFISERGK ILPRRVTGTG AKNQRKLTIA IKRARIMGLL PFVSDE

UniProtKB: Small ribosomal subunit protein bS18

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Macromolecule #18: 30S ribosomal protein S19

MacromoleculeName: 30S ribosomal protein S19 / type: protein_or_peptide / ID: 18 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 8.999471 KDa
SequenceString:
SLKKGPFVDD HLMKKVEAQQ GAEKKKVIKT WSRRSTIFPS FVGFTIAVYD GRKHVPVYIQ EDMVGHKLGE FAPTRTYR

UniProtKB: UNIPROTKB: A0A449DXS1

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Macromolecule #19: 30S ribosomal protein S20

MacromoleculeName: 30S ribosomal protein S20 / type: protein_or_peptide / ID: 19 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 8.841125 KDa
SequenceString:
PNIESAIKRV RTSANANAKN SSQTNAMRTA IKKFEEAVAA GADNVDALYN EAVKAVDMAA TKGLIHKNKA NRDKIRLSKL AK

UniProtKB: Small ribosomal subunit protein bS20

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Macromolecule #22: 50S ribosomal protein L2

MacromoleculeName: 50S ribosomal protein L2 / type: protein_or_peptide / ID: 22 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 30.159812 KDa
SequenceString: AIKKYKPTTN GRRNMTSSDF AEITTSTPEK SLLQPLKNNA GRNNNGRITV RHQGGGHKRQ YRVIDFKRNK DNVAAVVKTI EYDPNRSAN IALVHYEDGV KAYILAPKGL EVGMRLVSGP EADIKVGNAL PLENIPVGTV IHNIEMKPGK GGQLIRSAGT S AQVLGKEG ...String:
AIKKYKPTTN GRRNMTSSDF AEITTSTPEK SLLQPLKNNA GRNNNGRITV RHQGGGHKRQ YRVIDFKRNK DNVAAVVKTI EYDPNRSAN IALVHYEDGV KAYILAPKGL EVGMRLVSGP EADIKVGNAL PLENIPVGTV IHNIEMKPGK GGQLIRSAGT S AQVLGKEG KYVLIRLNSG EVRMILATCR ATIGSVGNEQ HELINIGKAG RSRWMRKRPT VRGSVMNPND HPHGGGEGKT PI GRKAPVS PWGQPAIGYK TRNKKAKSDK LIVRRRTK

UniProtKB: Large ribosomal subunit protein uL2

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Macromolecule #23: 50S ribosomal protein L3

MacromoleculeName: 50S ribosomal protein L3 / type: protein_or_peptide / ID: 23 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 22.498104 KDa
SequenceString: TKGILGKKVG MTQIFTESGE LIPVTVVEAT PNVVLQVKTV ETDGYEAIQV GYQDKREVLS NKPAKGHVAK ANTAPKRFIK EFKNVELGE YEVGKEIKVD VFQAGDVVDV TGTTKGKGFQ GAIKRHGQSR GPMSHGSRYH RRPGSMGPVA PNRVFKNKRL A GRMGGDRV ...String:
TKGILGKKVG MTQIFTESGE LIPVTVVEAT PNVVLQVKTV ETDGYEAIQV GYQDKREVLS NKPAKGHVAK ANTAPKRFIK EFKNVELGE YEVGKEIKVD VFQAGDVVDV TGTTKGKGFQ GAIKRHGQSR GPMSHGSRYH RRPGSMGPVA PNRVFKNKRL A GRMGGDRV TIQNLEVVKV DVERNVILIK GNIPGAKKSL ITIKSAVKA

UniProtKB: Large ribosomal subunit protein uL3

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Macromolecule #24: 50S ribosomal protein L4

MacromoleculeName: 50S ribosomal protein L4 / type: protein_or_peptide / ID: 24 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 22.384504 KDa
SequenceString: PNVALFKQDG TQNGEITLNE EIFGIEPNES VVYDAIIMQR ASLRQGTHAV KNRSAVRGGG RKPWRQKGTG RARQGSIRSP QWRGGGVVF GPTPRSYSYK LPKKVRRLAM KSVLSDKVAE NNLVAVEGLS FDAPKTKEFK QVLANLSIDT KVLVVLENGN D FAALSARN ...String:
PNVALFKQDG TQNGEITLNE EIFGIEPNES VVYDAIIMQR ASLRQGTHAV KNRSAVRGGG RKPWRQKGTG RARQGSIRSP QWRGGGVVF GPTPRSYSYK LPKKVRRLAM KSVLSDKVAE NNLVAVEGLS FDAPKTKEFK QVLANLSIDT KVLVVLENGN D FAALSARN LPNVSVVTSD NVSVLDVVSA NKVLATQTAL TQIEEVLA

UniProtKB: Large ribosomal subunit protein uL4

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Macromolecule #25: 50S ribosomal protein L5

MacromoleculeName: 50S ribosomal protein L5 / type: protein_or_peptide / ID: 25 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 19.863113 KDa
SequenceString:
NRLKEKYIKE VTPSLVEKFN YSSVMQTPKV DKIVINMGVG DAVSNAKNLD KAVEELALIT GQKPLITKAK KSIAGFRLRE GMPIGAKVT LRGERMYEFL DKLVTVSLPR VRDFHGVSKK AFDGRGNYTL GIKEQLIFPE VDYDLVDKVR GMDIVIVTTA N TDEESREL LAQLGMPFQ

UniProtKB: Large ribosomal subunit protein uL5

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Macromolecule #26: 50S ribosomal protein L6

MacromoleculeName: 50S ribosomal protein L6 / type: protein_or_peptide / ID: 26 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 19.164871 KDa
SequenceString:
SRIGNKVVVL PAGVEIKQDG NNITVKGPKG ELTREFSSDI KMNIEGNEVT FTRPNDSKEM KTIHGTTRAN FNNMVVGVSE GFQKALELI GVGYRAQVQG NKLTLNVGYS HPVEMTAPEG VTFEVPANTQ VIVKGINKEV VGELAANIRG VRPPEPYKGK G IRYVGEFV RRKEGKTG

UniProtKB: Large ribosomal subunit protein uL6

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Macromolecule #27: 50S ribosomal protein L13

MacromoleculeName: 50S ribosomal protein L13 / type: protein_or_peptide / ID: 27 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 16.099585 KDa
SequenceString:
MRTTYMAKAG EVERKWYVVD ATDVPLGRLS AVVASVLRGK NKPTFTPHVD TGDFVIVINA DKVKLTGKKA TDKIYYRHSM YPGGLKSVT AGELRDKNSR RLIETSVKGM LPKNTLGRKQ FTKLNVYGGA EHPHAAQQPE VLDITN

UniProtKB: Large ribosomal subunit protein uL13

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Macromolecule #28: 50S ribosomal protein L14

MacromoleculeName: 50S ribosomal protein L14 / type: protein_or_peptide / ID: 28 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 13.165275 KDa
SequenceString:
MIQQESRLRV ADNSGAREIL TIKVLGGSGR KTANIGDVIV ATVKQATPGG VVKKGEVVKA VIVRTKSGAR RADGSYIKFD ENAAVIIRD DKSPRGTRIF GPVARELREN NFMKIVSLAP EVL

UniProtKB: Large ribosomal subunit protein uL14

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Macromolecule #29: 50S ribosomal protein L15

MacromoleculeName: 50S ribosomal protein L15 / type: protein_or_peptide / ID: 29 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 15.602868 KDa
SequenceString:
MKLHELKPAE GSRQVRNRVG RGTSSGNGKT AGRGQKGQKA RSGGGVRLGF EGGQTPLFRR LPKRGFTNIN RKDYAVVNLD TLNRFEDGT EVTPVVLKEA GIVKNEKAGI KVLADGELTK KLTVKAAKFS KSAQEAIEAA GGSIEVI

UniProtKB: Large ribosomal subunit protein uL15

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Macromolecule #30: 50S ribosomal protein L16

MacromoleculeName: 50S ribosomal protein L16 / type: protein_or_peptide / ID: 30 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 15.960901 KDa
SequenceString:
MLVPKRVKHR REFRGKMRGE AKGGKEVAFG EWGLQATESH WITNRQIEAA RIAMTRYMKR GGKVWIKIFP HKSYTSKAIG VRMGKGKGA PEGWVSPVKR GKIMFEIAGV PEEVAREALR LASHKLPVKT KIVKREEMGG ES

UniProtKB: Large ribosomal subunit protein uL16

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Macromolecule #31: 50S ribosomal protein L17

MacromoleculeName: 50S ribosomal protein L17 / type: protein_or_peptide / ID: 31 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 14.156251 KDa
SequenceString:
YRKLGRTSSQ RKAMLRDITT DLIINERIVT TEARAKEVRS TVEKMITLGK RGDLHARRQA ATFVRNEVAS VREEDESIVV ESALQKLFN DLGPRFAERQ GGYTRILKTE PRRGDAAPMV VIEFV

UniProtKB: Large ribosomal subunit protein bL17

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Macromolecule #32: 50S ribosomal protein L18

MacromoleculeName: 50S ribosomal protein L18 / type: protein_or_peptide / ID: 32 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 12.806634 KDa
SequenceString:
ITKPDKNKTR QKRHRRVRNK ISGTAECPRL NIFRSNKNIY AQVIDDVAGV TLASASALDK EISGGTKTET AAAVGKLVAE RAAEKGIKK VVFDRGGYLY HGRVQALAEA ARENGLEF

UniProtKB: Large ribosomal subunit protein uL18

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Macromolecule #33: 50S ribosomal protein L19

MacromoleculeName: 50S ribosomal protein L19 / type: protein_or_peptide / ID: 33 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 13.113282 KDa
SequenceString:
NPLIQELTQE QLRTDIPAFR PGDTVRVHAK VVEGTRERIQ LFEGVVIKRR GAGISETYTV RKVSNGVGVE RTFPLHTPRV AQIEVVRYG KVRRAKLYYL RALHGKAARI KEIRR

UniProtKB: Large ribosomal subunit protein bL19

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Macromolecule #34: 50S ribosomal protein L20

MacromoleculeName: 50S ribosomal protein L20 / type: protein_or_peptide / ID: 34 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 13.542957 KDa
SequenceString:
ARVKGGTVTR KRRKKVLKLA KGYYGSKHTL FKSAKEQVMN SYYYAFRDRR QKKRDFRKLW IARINAAARM NGLSYSKLMH GLKLAEIDI NRKMLADLAV NDAAAFTALA EQAKDALSK

UniProtKB: Large ribosomal subunit protein bL20

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Macromolecule #35: 50S ribosomal protein L21

MacromoleculeName: 50S ribosomal protein L21 / type: protein_or_peptide / ID: 35 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 11.166986 KDa
SequenceString:
MYAIIKTGGK QVKVEVGQAI YVEKLNVEAG EKVVFDEVIL VGGESTKVGA PTVAGATVEG TVEKHGKQKK VVTFQYKPKK HSHRKQGHR QPYTKVMIEA INA

UniProtKB: Large ribosomal subunit protein bL21

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Macromolecule #36: 50S ribosomal protein L22

MacromoleculeName: 50S ribosomal protein L22 / type: protein_or_peptide / ID: 36 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 12.126077 KDa
SequenceString:
QITSAKATAK TVRTSPRKAR LVIDLIRGKS VADAISILKF TPNKSAGIIE KVLMSAVANA ENNFDLDVES LVVSEAFVNE GPTMKRFRP RAKGSASPIN KRTSHITVVV TEK

UniProtKB: Large ribosomal subunit protein uL22

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Macromolecule #37: 50S ribosomal protein L23

MacromoleculeName: 50S ribosomal protein L23 / type: protein_or_peptide / ID: 37 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 10.297111 KDa
SequenceString:
ELLDVIKRPV ITEKSMLAMD EKKYTFEVDT RANKTLVKQA VESAFDVKVA NVNILNVRPK FKRMGKYAGY TKKRRKAIVT LTEDSKEIQ

UniProtKB: Large ribosomal subunit protein uL23

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Macromolecule #38: 50S ribosomal protein L24

MacromoleculeName: 50S ribosomal protein L24 / type: protein_or_peptide / ID: 38 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 10.892797 KDa
SequenceString:
MFVKKGDKVK VITGKDKNKE GVVLAAFPKQ DKVIVEGVNV VKKHQKPNQA APQGGILEVE APIHVSNVMV IDPSNGEATK VAFKEVDGK KVRVSKKTGE VL

UniProtKB: Large ribosomal subunit protein uL24

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Macromolecule #39: 50S ribosomal protein L27

MacromoleculeName: 50S ribosomal protein L27 / type: protein_or_peptide / ID: 39 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 8.146118 KDa
SequenceString:
STSNGRDSES KRLGAKSADG QTVTGGSILY RQRGTKIYPG VNVGIGGDDT LFAKVDGVVR FERKGRDKKQ VSVYPV

UniProtKB: Large ribosomal subunit protein bL27

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Macromolecule #40: 50S ribosomal protein L28

MacromoleculeName: 50S ribosomal protein L28 / type: protein_or_peptide / ID: 40 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 6.072187 KDa
SequenceString:
AKVCYFTGRK TSSGNNRSHA MNSTKRTVKP NLQKVRVLID GKPKKVWVSA RALK

UniProtKB: Large ribosomal subunit protein bL28

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Macromolecule #41: 50S ribosomal protein L29

MacromoleculeName: 50S ribosomal protein L29 / type: protein_or_peptide / ID: 41 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 7.211366 KDa
SequenceString:
KVKEIRELTT AEMLDKEKQL KEELFNLRFQ LATGQLENTA RIKEVRQSIA RIKTVLREQA N

UniProtKB: Large ribosomal subunit protein uL29

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Macromolecule #42: 50S ribosomal protein L30

MacromoleculeName: 50S ribosomal protein L30 / type: protein_or_peptide / ID: 42 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 6.234273 KDa
SequenceString:
AELKITLKRS VIGRPQNQRA TVKALGLGKV NSTVTKPANE AIKGMVNTIS HLVDVEEV

UniProtKB: Large ribosomal subunit protein uL30

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Macromolecule #43: 50S ribosomal protein L32

MacromoleculeName: 50S ribosomal protein L32 / type: protein_or_peptide / ID: 43 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 6.217372 KDa
SequenceString:
AVPARRTSKA KKAKRRTHYK LTIKGLNACS NCGEMKKSHH VCPACGHYDG KDVMSK

UniProtKB: Large ribosomal subunit protein bL32

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Macromolecule #44: 50S ribosomal protein L33

MacromoleculeName: 50S ribosomal protein L33 / type: protein_or_peptide / ID: 44 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 6.052027 KDa
SequenceString:
MRVNITLECT SCKERNYLTN KNKRNNPDRL EKQKYCPRER KVTLHRETK

UniProtKB: Large ribosomal subunit protein bL33

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Macromolecule #45: 50S ribosomal protein L34

MacromoleculeName: 50S ribosomal protein L34 / type: protein_or_peptide / ID: 45 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 5.373507 KDa
SequenceString:
MKRTYQPNKR KRQKVHGFRK RMSTKNGRRV LASRRRKGRK VISA

UniProtKB: Large ribosomal subunit protein bL34

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Macromolecule #46: 50S ribosomal protein L35

MacromoleculeName: 50S ribosomal protein L35 / type: protein_or_peptide / ID: 46 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 7.466941 KDa
SequenceString:
PKQKTHRGLA KRVKRTGGGG LKRGRAFTSH RFHGKTKKQR RQLRKASMVA KGDYKRIRQQ LARM

UniProtKB: Large ribosomal subunit protein bL35

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Macromolecule #47: 50S ribosomal protein L36

MacromoleculeName: 50S ribosomal protein L36 / type: protein_or_peptide / ID: 47 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Enterococcus faecalis OG1RF (bacteria)
Molecular weightTheoretical: 4.440534 KDa
SequenceString:
MKVRPSVKPM CEHCKVIRRK GRVMVICPAN PKHKQRQG

UniProtKB: Large ribosomal subunit protein bL36

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Macromolecule #48: ZINC ION

MacromoleculeName: ZINC ION / type: ligand / ID: 48 / Number of copies: 4 / Formula: ZN
Molecular weightTheoretical: 65.409 Da

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Experimental details

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Structure determination

Methodcryo EM
Processingsingle particle reconstruction
Aggregation stateparticle

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Sample preparation

Concentration1.5 mg/mL
BufferpH: 7.5
GridDetails: unspecified
VitrificationCryogen name: ETHANE / Chamber humidity: 100 % / Chamber temperature: 277 K / Instrument: FEI VITROBOT MARK IV
Details: Vol = 4 uL, BT = 4 sec, BF = 0, DT = 0, WT = 8 sec.
DetailsSample was monodisperse.

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Electron microscopy

MicroscopeFEI TITAN KRIOS
Image recordingFilm or detector model: GATAN K2 QUANTUM (4k x 4k) / Detector mode: COUNTING / Average electron dose: 25.0 e/Å2
Electron beamAcceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN
Electron opticsIllumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD
Sample stageSpecimen holder model: FEI TITAN KRIOS AUTOGRID HOLDER / Cooling holder cryogen: NITROGEN
Experimental equipment
Model: Titan Krios / Image courtesy: FEI Company

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Image processing

Startup modelType of model: OTHER / Details: Ab initio
Final reconstructionApplied symmetry - Point group: C1 (asymmetric) / Resolution.type: BY AUTHOR / Resolution: 2.9 Å / Resolution method: FSC 0.143 CUT-OFF / Software - Name: cryoSPARC (ver. 0.63) / Number images used: 335675
Initial angle assignmentType: COMMON LINE / Software - Name: RELION (ver. 3.1)
Final angle assignmentType: MAXIMUM LIKELIHOOD / Software - Name: cryoSPARC (ver. 0.63)

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Atomic model buiding 1

Initial model
PDB IDChain

5li0

source_name: PDB, initial_model_type: experimental model

4ybb

source_name: PDB, initial_model_type: experimental model
RefinementSpace: REAL / Protocol: FLEXIBLE FIT / Overall B value: 177 / Target criteria: Correlation Coefficient
Output model

PDB-6w6p:
MultiBody Refinement of 70S Ribosome from Enterococcus faecalis

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About Yorodumi

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News

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

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