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A paper regarding Molmil , a molecular viewer developed by PDBj, has been published .

A paper regarding Molmil, a molecular viewer developed by PDBj, has been published.

A WEB site and movies are available for “Shapes of proteins for living things – Molecules of COVID-19”

A special WEB site and movies for Coronavirus 3D structure are now available. ... things – Molecules of COVID-19”. Using Molmil, we show 3D structures of a virion, spike proteins, receptors and antibodies, mutations of delta variant, antibody cocktail ...

A fasta file for all the sequence information is now available from the PDBj ftp site.

In addition to fasta sequence information ('fasta_seq_data/PDBID_seq.txt') for each PDB entry, a fasta file for all the sequence information ('all_fasta_sequence.txt.gz') is now available from the PDBj ftp site.

A paper describing PDBj's new tools and activities published in Protein Science.

... functions in Data-out activities at Protein Data Bank Japan (PDBj) Kinjo, A.R., Bekker, G.-J., Wako, H., Endo, S., Tsuchiya, Y., Sato, H ...

a tutorial about PDBj Mine search services -FAQ

... on the PDBj Mine search service? A) Using PDBj Mine, you can do Quick search, Advanced search and SQL ...

a tutorial about PDBj search services -FAQ

... available on how to use various search services at PDBj? A) Click on the "Help" or "?" link in the Search panel from the ...

On 10 Nov (Sat) and 11 (Sun), we exhibit a booth in \

... 2018 (Sun) (JST). The venue is around Odaiba, Tokyo, Japan. We exhibit a booth in this event. Exhibition date and time: - 10th Nov 2018 (Sat ...

PDBj has released a new service 'Chemie search' and a modified 'search bar' .

PDBj has released a new service 'Chemie search'. And the 'search bar' is modified and allows you to more quickly find the resource or service you're looking for.

Structural Life Science - 7th International Conference on Structural Genomics (ICSG2013-SLS) will be held in Sapporo, Japan, July 29th - August 1st, 2013. PDBj will introduce activities of PDBj and wwPDB in a booth display.

Structural Life Science - 7th International Conference on Structural Genomics (ICSG2013-SLS) will be held in Sapporo, Japan, July 29th - August 1st, 2013. PDBj will introduce activities of PDBj and wwPDB in a booth display.

[wwPDB] The PDB Archive Reaches a Significant Milestone

With this week's update, the PDB archive has passed the milestone of 150,000 entries, and now contains a total of 150,145. (wwPDB news)

How can I submit a hybrid structure factor data with two datasets(x-ray/neutron)?- FAQ

... structure factor data with two datasets(x-ray/neutron)? A) You can generate a structure factor data with the following procedures. (original.mtz contains as follows ...

The 12th AsCA will be held in Hong Kong from 7 to 10 December. Haruki Nakamura, Head of PDBj will give a poster presentation to introduce PDBj's web services and our latest activities.

... the Protein Data Bank (PDB)". Haruki Nakamura, Head of PDBj, will give a poster presentation to introduce PDBj's web services and our latest activities ...

[wwPDB] PDB Certified as a Trustworthy Data Repository

PDB Certified as a Trustworthy Data Repository (wwPDB news)

The wwPDB is going to start to use a new standard format, PDBx/mmCIF in 2014, replacing the legacy \

The wwPDB is going to start to use a new standard format, PDBx/mmCIF in 2014, replacing the legacy "PDB format" that has been used since nineteen-seventies. The details are shown in the Web page for the new standard format.

PDB Reaches a New Milestone: 100,000+ Entries ( wwPDB News )

PDB Reaches a New Milestone: 100,000+ Entries (wwPDB News)

[wwPDB] Depositing a Structure? Include Your ORCiD

Depositing a Structure? Include Your ORCiD (wwPDB news)

We'll hold a luncheon seminar at the 27th Biophysical Society of Taiwan

We will hold a luncheon seminar on Thursday, May 18, 2023 at the 27th Biophysical Society ...

[wwPDB] A tribute to Prof. Michael G. Rossmann

... of Michael's key discoveries is of the Rossmann fold, a structural motif commonly found in enzymes that bind to dinucleotide ... new therapeutics to treat and prevent viral infections. Michael was a member of the wwPDB advisory committee for four years, ...

On 18th Aug (Sun), we exhibit a booth at the 29th Science Festa Osaka

... at the 29th Science Festa Osaka, which is a scientific event for young people. The exhibition day of our booth is ...

[wwPDB] Distribution of NMR data in a unified format at the PDB archive

... format; Gutmanas et al. (2015) NMR Exchange Format: a unified and open standard for representation of NMR restraint data ... existing directories “nmr_restraints” and “nmr_chemical_shifts”. A standardized naming convention for NMR unified data will also ...

On 24th Sep, we’ll hold a luncheon seminar at the Annual Meeting of the Biophysical Society of Japan in Miyazaki

On 24th Sep, we will hold a luncheon seminar at the 57th Annual Meeting of the Biophysical Society of ... to 29th Aug 16:00 (JST). The participants are decided by drawing. * A "Seminar Numbered Ticket" distribution desk will be set up from around 08 ...

The Road to 100,000 Entries: Building a Community Resource ( wwPDB News )

The Road to 100,000 Entries: Building a Community Resource (wwPDB News)

We start a molmil service to display eF-site electrostatic molecular surfaces.

We start a Molmil service to display eF-site electrostatic molecular surfaces.

Format Conversion: Do you provide a service to convert the file format between PDB format and PDBx/mmCIF? - FAQ

Q) Format Conversion: Do you provide a service to convert the file format between PDB format and PDBx/mmCIF? A) By using our Format Conversion web service, you can convert the file format between PDB format and PDBx/mmCIF. [Back to the question list]

[wwPDB] PDB-Dev: A Prototype System for Integrative/Hybrid Structural Models announced in Structure

PDB-Dev: A Prototype System for Integrative/Hybrid Structural Models announced in Structure (wwPDB News)

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