Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1PKP
DownloadVisualize
BU of 1pkp by Molmil
THE STRUCTURE OF RIBOSOMAL PROTEIN S5 REVEALS SITES OF INTERACTION WITH 16S RRNA
Descriptor: RIBOSOMAL PROTEIN S5
Authors:Ramakrishnan, V, White, S.W.
Deposit date:1993-08-30
Release date:1994-01-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The structure of ribosomal protein S5 reveals sites of interaction with 16S rRNA.
Nature, 358, 1992
2K3F
DownloadVisualize
BU of 2k3f by Molmil
Ribosomal protein L11 from Thermotoga maritima
Descriptor: 50S ribosomal protein L11
Authors:Jonker, H.R.A, Ilin, S, Schwalbe, H, Woehnert, J.
Deposit date:2008-05-06
Release date:2008-06-17
Last modified:2013-09-04
Method:SOLUTION NMR
Cite:Domain reorientation and induced fit upon RNA binding: solution structure and dynamics of ribosomal protein L11 from Thermotoga maritima
ChemBioChem, 6, 2005
2FKX
DownloadVisualize
BU of 2fkx by Molmil
Ribosomal protein s15 from thermus thermophilus, nmr recalculated structure
Descriptor: 30S ribosomal protein S15
Authors:Malliavin, T.E.
Deposit date:2006-01-05
Release date:2006-12-19
Last modified:2018-01-24
Method:SOLUTION NMR
Cite:The Conformational Landscape of the Ribosomal Protein S15 and Its Influence on the Protein Interaction with 16S RNA.
Biophys.J., 92, 2007
1RIS
DownloadVisualize
BU of 1ris by Molmil
CRYSTAL STRUCTURE OF THE RIBOSOMAL PROTEIN S6 FROM THERMUS THERMOPHILUS
Descriptor: RIBOSOMAL PROTEIN S6
Authors:Lindahl, M, Svensson, L.A, Liljas, A, Sedelnikova, S.E, Eliseikina, I.A, Fomenkova, N.P, Nevskaya, N, Nikonov, S.V, Garber, M.B, Muranova, T.A, Rykonova, A.I, Amons, R.
Deposit date:1994-05-31
Release date:1994-09-30
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the ribosomal protein S6 from Thermus thermophilus.
EMBO J., 13, 1994
6EN7
DownloadVisualize
BU of 6en7 by Molmil
Crystal structure of the ribosome assembly factor Nsa1
Descriptor: Ribosome biogenesis protein NSA1
Authors:Altegoer, F, Bange, G.
Deposit date:2017-10-04
Release date:2017-12-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.403 Å)
Cite:Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes.
Cell, 171, 2017
1QKH
DownloadVisualize
BU of 1qkh by Molmil
SOLUTION STRUCTURE OF THE RIBOSOMAL PROTEIN S19 FROM THERMUS THERMOPHILUS
Descriptor: 30S RIBOSOMAL PROTEIN S19
Authors:Helgstrand, M, Rak, A.V, Allard, P, Davydova, N, Garber, M.B, Hard, T.
Deposit date:1999-07-20
Release date:1999-07-21
Last modified:2018-01-17
Method:SOLUTION NMR
Cite:Solution structure of the ribosomal protein S19 from Thermus thermophilus.
J. Mol. Biol., 292, 1999
3JSY
DownloadVisualize
BU of 3jsy by Molmil
N-terminal fragment of ribosomal protein L10 from Methanococcus jannaschii
Descriptor: Acidic ribosomal protein P0 homolog
Authors:Kravchenko, O, Mitroshin, I, Nikulin, A.D, Piendl, W, Garber, M, Nikonov, S.
Deposit date:2009-09-11
Release date:2010-05-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of a two-domain N-terminal fragment of ribosomal protein L10 from Methanococcus jannaschii reveals a specific piece of the archaeal ribosomal stalk
J.Mol.Biol., 399, 2010
1QKF
DownloadVisualize
BU of 1qkf by Molmil
SOLUTION STRUCTURE OF THE RIBOSOMAL PROTEIN S19 FROM THERMUS THERMOPHILUS
Descriptor: 30S RIBOSOMAL PROTEIN S19
Authors:Helgstrand, M, Rak, A.V, Allard, P, Davydova, N, Garber, M.B, Hard, T.
Deposit date:1999-07-19
Release date:1999-07-20
Last modified:2018-01-17
Method:SOLUTION NMR
Cite:Solution structure of the ribosomal protein S19 from Thermus thermophilus.
J. Mol. Biol., 292, 1999
5YT0
DownloadVisualize
BU of 5yt0 by Molmil
Crystal structure of the complex of archaeal ribosomal stalk protein aP1 and archaeal translation initiation factor aIF5B
Descriptor: Archaeal ribosomal stalk protein aP1, GUANOSINE-5'-DIPHOSPHATE, Probable translation initiation factor IF-2
Authors:Murakami, R, Singh, C.R, Morris, J, Tang, L, Harmon, I, Miyoshi, T, Ito, K, Asano, K, Uchiumi, T.
Deposit date:2017-11-16
Release date:2018-06-27
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:The Interaction between the Ribosomal Stalk Proteins and Translation Initiation Factor 5B Promotes Translation Initiation
Mol. Cell. Biol., 38, 2018
1IS1
DownloadVisualize
BU of 1is1 by Molmil
Crystal structure of ribosome recycling factor from Vibrio parahaemolyticus
Descriptor: RIBOSOME RECYCLING FACTOR
Authors:Nakano, H, Yamaichi, Y, Uchiyama, S, Yoshida, T, Nishina, K, Kato, H, Ohkubo, T, Honda, T, Yamagata, Y, Kobayashi, Y.
Deposit date:2001-11-05
Release date:2003-06-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and binding mode of a ribosome recycling factor (RRF) from mesophilic bacterium
J.BIOL.CHEM., 278, 2003
2FOW
DownloadVisualize
BU of 2fow by Molmil
THE RNA BINDING DOMAIN OF RIBOSOMAL PROTEIN L11: THREE-DIMENSIONAL STRUCTURE OF THE RNA-BOUND FORM OF THE PROTEIN, NMR, 26 STRUCTURES
Descriptor: RIBOSOMAL PROTEIN L11
Authors:Hinck, A.P, Markus, M.A, Huang, S, Grzesiek, S, Kustanovich, I, Draper, D.E, Torchia, D.A.
Deposit date:1997-05-26
Release date:1997-11-26
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:The RNA binding domain of ribosomal protein L11: three-dimensional structure of the RNA-bound form of the protein and its interaction with 23 S rRNA.
J.Mol.Biol., 274, 1997
1ILY
DownloadVisualize
BU of 1ily by Molmil
Solution Structure of Ribosomal Protein L18 of Thermus thermophilus
Descriptor: RIBOSOMAL PROTEIN L18
Authors:Woestenenk, E.A, Gongadze, G.M, Shcherbakov, D.V, Rak, A.V, Garber, M.B, Hard, T, Berglund, H.
Deposit date:2001-05-09
Release date:2002-05-01
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:The solution structure of ribosomal protein L18 from Thermus thermophilus reveals a conserved RNA-binding fold.
Biochem.J., 363, 2002
5IE8
DownloadVisualize
BU of 5ie8 by Molmil
The pyrazinoic acid binding domain of Ribosomal Protein S1 from Mycobacterium tuberculosis
Descriptor: 30S ribosomal protein S1
Authors:Huang, B, Liao, X.
Deposit date:2016-02-25
Release date:2016-03-16
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:(1)H, (15)N, (13)C resonance assignments for pyrazinoic acid binding domain of ribosomal protein S1 from Mycobacterium tuberculosis
Biomol NMR Assign, 10, 2016
2IL9
DownloadVisualize
BU of 2il9 by Molmil
Crystal Structure of Plautia Stali Intestine Virus Intergenic Region Internal Ribosome Entry Site Ribosomal Binding Domain RNA at 3.1 Angstroms
Descriptor: Ribosomal Binding Domain of the IRES RNA
Authors:Pfingsten, J.S, Costantino, D.A, Kieft, J.S.
Deposit date:2006-10-02
Release date:2007-02-13
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis for ribosome recruitment and manipulation by a viral IRES RNA
Science, 314, 2006
2MFI
DownloadVisualize
BU of 2mfi by Molmil
Domain 1 of E. coli ribosomal protein S1
Descriptor: 30S ribosomal protein S1
Authors:Giraud, P, Crechet, J, Bontems, F, Uzan, M, Sizun, C.
Deposit date:2013-10-11
Release date:2014-05-21
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Resonance assignment of the ribosome binding domain of E. coli ribosomal protein S1.
Biomol.Nmr Assign., 9, 2015
2MFL
DownloadVisualize
BU of 2mfl by Molmil
Domain 2 of E. coli ribosomal protein S1
Descriptor: 30S ribosomal protein S1
Authors:Giraud, P, Crechet, J, Bontems, F, Uzan, M, Sizun, C.
Deposit date:2013-10-12
Release date:2014-05-21
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Resonance assignment of the ribosome binding domain of E. coli ribosomal protein S1.
Biomol.Nmr Assign., 9, 2015
2PQI
DownloadVisualize
BU of 2pqi by Molmil
Crystal structure of active ribosome inactivating protein from maize (b-32)
Descriptor: Ribosome-inactivating protein 3
Authors:Mak, A.N.S, Wong, Y.T, Young, J.A, Cha, S.S, Sze, K.H, Au, S.W.N, Wong, K.B, Shaw, P.C.
Deposit date:2007-05-02
Release date:2008-02-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure-function study of maize ribosome-inactivating protein: implications for the internal inactivation region and the sole glutamate in the active site.
Nucleic Acids Res., 35, 2007
5Y48
DownloadVisualize
BU of 5y48 by Molmil
Crystal structure of the complex of Ribosome inactivating protein from Momordica balsamina with Pyrimidine-2,4-dione at 1.70 Angstrom resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Ribosome inactivating protein, URACIL
Authors:Singh, P.K, Pandey, S, Iqbal, N, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2017-08-01
Release date:2017-09-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Binding and structural studies of the complexes of type 1 ribosome inactivating protein from Momordica balsamina with uracil and uridine.
Proteins, 87, 2019
2PQG
DownloadVisualize
BU of 2pqg by Molmil
Crystal structure of inactive ribosome inactivating protein from maize (b-32)
Descriptor: Ribosome-inactivating protein 3
Authors:Mak, A.N.S, Wong, Y.T, Young, J.A, Cha, S.S, Sze, K.H, Au, S.W.N, Wong, K.B, Shaw, P.C.
Deposit date:2007-05-02
Release date:2008-02-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Structure-function study of maize ribosome-inactivating protein: implications for the internal inactivation region and the sole glutamate in the active site.
Nucleic Acids Res., 35, 2007
1N88
DownloadVisualize
BU of 1n88 by Molmil
NMR structure of the ribosomal protein L23 from Thermus thermophilus.
Descriptor: Ribosomal protein L23
Authors:Ohman, A, Rak, A, Dontsova, M, Garber, M.B, Hard, T.
Deposit date:2002-11-20
Release date:2003-06-10
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:NMR structure of the ribosomal protein L23 from Thermus thermophilus.
J.Biomol.NMR, 26, 2003
2OV7
DownloadVisualize
BU of 2ov7 by Molmil
The first domain of the ribosomal protein L1 from Thermus thermophilus
Descriptor: 50S ribosomal protein L1
Authors:Kljashtorny, V, Tishchenko, S, Nevskaya, N, Nikonov, S, Davydova, N, Garber, M.
Deposit date:2007-02-13
Release date:2007-12-25
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Domain I of ribosomal protein L1 is sufficient for specific RNA binding.
Nucleic Acids Res., 35, 2007
2NXC
DownloadVisualize
BU of 2nxc by Molmil
Apo-form of T. thermophilus ribosomal protein L11 methyltransferase (PrmA)
Descriptor: Ribosomal protein L11 methyltransferase
Authors:Demirci, H, Gregory, S.T, Dahlberg, A.E, Jogl, G.
Deposit date:2006-11-17
Release date:2007-02-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Recognition of ribosomal protein L11 by the protein trimethyltransferase PrmA.
Embo J., 26, 2007
2NXJ
DownloadVisualize
BU of 2nxj by Molmil
T.thermophilus ribosomal protein L11 methyltransferase (PrmA) in space group P 21 21 2
Descriptor: Ribosomal protein L11 methyltransferase
Authors:Demirci, H, Gregory, S.T, Dahlberg, A.E, Jogl, G.
Deposit date:2006-11-17
Release date:2006-12-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Recognition of ribosomal protein L11 by the protein trimethyltransferase PrmA.
Embo J., 26, 2007
2NXE
DownloadVisualize
BU of 2nxe by Molmil
T. thermophilus ribosomal protein L11 methyltransferase (PrmA) in complex with S-Adenosyl-L-Methionine
Descriptor: Ribosomal protein L11 methyltransferase, S-ADENOSYLMETHIONINE
Authors:Demirci, H, Gregory, S.T, Dahlberg, A.E, Jogl, G.
Deposit date:2006-11-17
Release date:2006-12-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Recognition of ribosomal protein L11 by the protein trimethyltransferase PrmA.
Embo J., 26, 2007
1C04
DownloadVisualize
BU of 1c04 by Molmil
IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI
Descriptor: 23S RRNA FRAGMENT, RIBOSOMAL PROTEIN L11, RIBOSOMAL PROTEIN L14, ...
Authors:Ban, N, Nissen, P, Capel, M, Moore, P.B, Steitz, T.A.
Deposit date:1999-07-14
Release date:1999-08-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (5 Å)
Cite:Placement of protein and RNA structures into a 5 A-resolution map of the 50S ribosomal subunit.
Nature, 400, 1999

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon