Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5D4H
DownloadVisualize
BU of 5d4h by Molmil
High-resolution nitrite complex of a copper nitrite reductase determined by synchrotron radiation crystallography
Descriptor: ACETIC ACID, COPPER (II) ION, Copper-containing nitrite reductase, ...
Authors:Fukuda, Y, Tse, K.M, Nakane, T, Nakatsu, T, Suzuki, M, Sugahara, M, Inoue, S, Masuda, T, Yumoto, F, Matsugaki, N, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Murphy, M.E.P, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-08-07
Release date:2016-03-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
4E9Q
DownloadVisualize
BU of 4e9q by Molmil
Multicopper Oxidase CueO (data2)
Descriptor: ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION
Authors:Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y.
Deposit date:2012-03-21
Release date:2013-05-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site.
J.Mol.Biol., 373, 2007
2PPE
DownloadVisualize
BU of 2ppe by Molmil
Reduced H145A mutant of AfNiR exposed to NO
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, COPPER (I) ION, ...
Authors:Tocheva, E.I, Murphy, M.E.P.
Deposit date:2007-04-28
Release date:2008-01-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Stable copper-nitrosyl formation by nitrite reductase in either oxidation state
Biochemistry, 46, 2007
4E9R
DownloadVisualize
BU of 4e9r by Molmil
Multicopper Oxidase CueO (data4)
Descriptor: ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION
Authors:Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y.
Deposit date:2012-03-21
Release date:2013-05-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site.
J.Mol.Biol., 373, 2007
7QQ2
DownloadVisualize
BU of 7qq2 by Molmil
CRYSTAL STRUCTURE OF AS-ISOLATED S321M MUTANT OF THREE-DOMAIN HEME-CU NITRITE REDUCTASE FROM RALSTONIA PICKETTII
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, HEME C
Authors:Petchyam, N, Antonyuk, S, Hasnain, S.S.
Deposit date:2022-01-06
Release date:2023-01-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural studies of haem three-domain copper nitrite reductase mutants from Ralstonia pickettii
To Be Published
7P2F
DownloadVisualize
BU of 7p2f by Molmil
Green-type copper-nitrite reductase from Sinorhizobium meliloti 2011
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase
Authors:Tolmie, C, Opperman, D.J, Ferroni, F.M.
Deposit date:2021-07-05
Release date:2021-10-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Copper nitrite reductase from Sinorhizobium meliloti 2011: Crystal structure and interaction with the physiological versus a nonmetabolically related cupredoxin-like mediator.
Protein Sci., 30, 2021
4ENZ
DownloadVisualize
BU of 4enz by Molmil
Structure of human ceruloplasmin at 2.6 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, COPPER (II) ION, ...
Authors:Samygina, V.R, Sokolov, A.V, Bourenkov, G, Vasilyev, V.B, Bartunik, H.
Deposit date:2012-04-13
Release date:2013-04-17
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Ceruloplasmin: macromolecular assemblies with iron-containing acute phase proteins.
Plos One, 8, 2013
5E9N
DownloadVisualize
BU of 5e9n by Molmil
Steccherinum murashkinskyi laccase at 0.95 resolution
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, COPPER (II) ION, ...
Authors:Polyakov, K.M, Glazunova, O.A, Fedorova, T.V, Koroleva, O.V.
Deposit date:2015-10-15
Release date:2015-12-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Structure-function study of two new middle-redox potential laccases from basidiomycetes Antrodiella faginea and Steccherinum murashkinskyi.
Int. J. Biol. Macromol., 118, 2018
2PPA
DownloadVisualize
BU of 2ppa by Molmil
Anaerobically manipulated wild type oxidized AfNiR bound to nitrous oxide
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, COPPER (I) ION, ...
Authors:Tocheva, E.I, Murphy, M.E.P.
Deposit date:2007-04-28
Release date:2008-04-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Conserved active site residues limit inhibition of a copper-containing nitrite reductase by small molecules.
Biochemistry, 47, 2008
2PPD
DownloadVisualize
BU of 2ppd by Molmil
Oxidized H145A mutant of AfNiR bound to nitric oxide
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, COPPER (I) ION, ...
Authors:Tocheva, E.I, Murphy, M.E.P.
Deposit date:2007-04-28
Release date:2008-01-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Stable copper-nitrosyl formation by nitrite reductase in either oxidation state
Biochemistry, 46, 2007
7RAC
DownloadVisualize
BU of 7rac by Molmil
Crystal structure of a dodecameric multicopper oxidase from M. hydrothermalis in an orthorhombic lattice
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, COPPER (II) ION, ...
Authors:Georgiadis, M.M, Ogata, C.M.
Deposit date:2021-06-30
Release date:2021-10-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Crystal structures of a dodecameric multicopper oxidase from Marinithermus hydrothermalis.
Acta Crystallogr D Struct Biol, 77, 2021
7RAB
DownloadVisualize
BU of 7rab by Molmil
Crystal structure of a dodecameric multicopper oxidase from M. hydrothermalis in a cubic lattice
Descriptor: COPPER (II) ION, MAGNESIUM ION, multicopper oxidase
Authors:Georgiadis, M.M.
Deposit date:2021-06-30
Release date:2021-10-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Crystal structures of a dodecameric multicopper oxidase from Marinithermus hydrothermalis.
Acta Crystallogr D Struct Biol, 77, 2021
7PEN
DownloadVisualize
BU of 7pen by Molmil
Crystal Structure of Two-Domain Laccase mutant Y230A from Streptomyces griseoflavus
Descriptor: COPPER (II) ION, SODIUM ION, Two-domain laccase
Authors:Gabdulkhakov, A, Tishchenko, S, Kolyadenko, I.
Deposit date:2021-08-11
Release date:2022-01-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Engineering the Catalytic Properties of Two-Domain Laccase from Streptomyces griseoflavus Ac-993.
Int J Mol Sci, 23, 2021
7PFR
DownloadVisualize
BU of 7pfr by Molmil
Crystal Structure of Two-Domain Laccase mutant M199A from Streptomyces griseoflavus
Descriptor: COPPER (II) ION, SODIUM ION, Two-domain laccase
Authors:Gabdulkhakov, A, Tishchenko, S, Kolyadenko, I.
Deposit date:2021-08-12
Release date:2022-01-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Engineering the Catalytic Properties of Two-Domain Laccase from Streptomyces griseoflavus Ac-993.
Int J Mol Sci, 23, 2021
7PES
DownloadVisualize
BU of 7pes by Molmil
Crystal Structure of Two-Domain Laccase mutant M199G from Streptomyces griseoflavus
Descriptor: COPPER (II) ION, OXYGEN MOLECULE, SODIUM ION, ...
Authors:Gabdulkhakov, A, Tishchenko, S, Kolyadenko, I.
Deposit date:2021-08-11
Release date:2022-01-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Engineering the Catalytic Properties of Two-Domain Laccase from Streptomyces griseoflavus Ac-993.
Int J Mol Sci, 23, 2021
5EHF
DownloadVisualize
BU of 5ehf by Molmil
Laccase from Antrodiella faginea
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, COPPER (II) ION, ...
Authors:Polyakov, K.M, Glazunova, O.A, Fedorova, T.V, Dorovatovskii, P.V, Koroleva, O.V.
Deposit date:2015-10-28
Release date:2015-12-23
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure-function study of two new middle-redox potential laccases from basidiomycetes Antrodiella faginea and Steccherinum murashkinskyi.
Int. J. Biol. Macromol., 118, 2018
6F1Q
DownloadVisualize
BU of 6f1q by Molmil
Crystal structure of three-domain heme-Cu nitrite reductase from Ralstonia pickettii in I213 space group
Descriptor: COPPER (II) ION, HEME C, Nitrite reductase
Authors:Antonyuk, S, Sasaki, D, Eady, R.R, Hasnain, S.S.
Deposit date:2017-11-22
Release date:2018-06-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Substrate entry and binding requires activation of tyrosine in heme-copper nitrite reductase
To be published
6FC7
DownloadVisualize
BU of 6fc7 by Molmil
Crystal Structure of Two-Domain Laccase mutant H165F from Streptomyces griseoflavus with high copper ions occupancy
Descriptor: COPPER (II) ION, GLYCEROL, OXYGEN MOLECULE, ...
Authors:Gabdulkhakov, A.G, Tishchenko, T.V.
Deposit date:2017-12-20
Release date:2019-01-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Investigations of Accessibility of T2/T3 Copper Center of Two-Domain Laccase fromStreptomyces griseoflavusAc-993.
Int J Mol Sci, 20, 2019
7PTM
DownloadVisualize
BU of 7ptm by Molmil
Crystal Structure of Two-Domain Laccase mutant M199G/R240H from Streptomyces griseoflavus
Descriptor: COPPER (II) ION, GLYCEROL, OXYGEN MOLECULE, ...
Authors:Gabdulkhakov, A, Tishchenko, S, Kolyadenko, I.
Deposit date:2021-09-27
Release date:2022-01-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Engineering the Catalytic Properties of Two-Domain Laccase from Streptomyces griseoflavus Ac-993.
Int J Mol Sci, 23, 2021
7PU0
DownloadVisualize
BU of 7pu0 by Molmil
Crystal Structure of Two-Domain Laccase mutant H165A/M199G from Streptomyces griseoflavus
Descriptor: COPPER (II) ION, SODIUM ION, Two-domain laccase
Authors:Gabdulkhakov, A, Tishchenko, S, Kolyadenko, I.
Deposit date:2021-09-28
Release date:2022-01-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Engineering the Catalytic Properties of Two-Domain Laccase from Streptomyces griseoflavus Ac-993.
Int J Mol Sci, 23, 2021
7PUH
DownloadVisualize
BU of 7puh by Molmil
Crystal Structure of Two-Domain Laccase mutant H165A/R240H from Streptomyces griseoflavus
Descriptor: 1,2-ETHANEDIOL, COPPER (II) ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Kolyadenko, I, Tishchenko, S, Gabdulkhakov, A.
Deposit date:2021-09-30
Release date:2022-01-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Engineering the Catalytic Properties of Two-Domain Laccase from Streptomyces griseoflavus Ac-993.
Int J Mol Sci, 23, 2021
5F7A
DownloadVisualize
BU of 5f7a by Molmil
Nitrite complex structure of copper nitrite reductase from Alcaligenes faecalis determined at 293 K
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, NITRITE ION
Authors:Fukuda, Y, Tse, K.M, Nakane, T, Nakatsu, T, Suzuki, M, Sugahara, M, Inoue, S, Masuda, T, Yumoto, F, Matsugaki, N, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Murphy, M.E.P, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-12-07
Release date:2016-03-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
7QY4
DownloadVisualize
BU of 7qy4 by Molmil
As isolated MSOX movie series dataset 5 (2 MGy) of the copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain)
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, GLYCEROL, ...
Authors:Rose, S.L, Baba, S, Okumura, H, Antonyuk, S.V, Sasaki, D, Tosha, T, Kumasaka, T, Eady, R.R, Yamamoto, M, Hasnain, S.S.
Deposit date:2022-01-27
Release date:2022-08-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Single crystal spectroscopy and multiple structures from one crystal (MSOX) define catalysis in copper nitrite reductases.
Proc.Natl.Acad.Sci.USA, 119, 2022
6EVG
DownloadVisualize
BU of 6evg by Molmil
Structural and Functional Characterisation of a Bacterial Laccase-like Multi-copper Oxidase CueO from Lignin-Degrading Bacterium Ochrobactrum sp. with Oxidase Activity towards Lignin Model Compounds and Lignosulfonate
Descriptor: 1,2-ETHANEDIOL, COPPER (II) ION, Multi-copper Oxidase CueO
Authors:Fulop, V, Wilkinson, R.
Deposit date:2017-11-01
Release date:2018-04-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Structural and functional characterisation of multi-copper oxidase CueO from lignin-degrading bacterium Ochrobactrum sp. reveal its activity towards lignin model compounds and lignosulfonate.
FEBS J., 285, 2018
7QXK
DownloadVisualize
BU of 7qxk by Molmil
As isolated MSOX movie series dataset 1 (0.4 MGy) of the copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain)
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, GLYCEROL, ...
Authors:Rose, S.L, Baba, S, Okumura, H, Antonyuk, S.V, Sasaki, D, Tosha, T, Kumasaka, T, Eady, R.R, Yamamoto, M, Hasnain, S.S.
Deposit date:2022-01-26
Release date:2022-08-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Single crystal spectroscopy and multiple structures from one crystal (MSOX) define catalysis in copper nitrite reductases.
Proc.Natl.Acad.Sci.USA, 119, 2022

219515

PDB entries from 2024-05-08

PDB statisticsPDBj update infoContact PDBjnumon