PDB: 18834 resultsInfo pagesStatus searchChemie searchBIRD

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6VKP	Crystal structure of DPO4 extension past 8-oxoadenine (oxoA) and dG Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*AP*GP*AP*TP*TP*CP*G)-3'), DNA (5'-D(*TP*TP*CP*AP*TP*(A38)P*GP*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*CP*C)-3'), ... Authors: Jung, H, Lee, S. Deposit date: 2020-01-21 Release date: 2021-01-27 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.54 Å) Cite: Insights into the mismatch discrimination mechanism of Y-family DNA polymerase Dpo4. Biochem.J., 478, 2021
5ZJP	Structure of N-acetylmannosamine-6-phosphate-2-epimerase from Vibrio cholerae with N-acetylglucosamine-6-phosphate Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, N-acetyl-D-glucosamine-6-phosphate, ... Authors: Manjunath, L, Guntupalli, S.R. Deposit date: 2018-03-21 Release date: 2018-12-05 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.66 Å) Cite: Crystal structures and kinetic analyses of N-acetylmannosamine-6-phosphate 2-epimerases from Fusobacterium nucleatum and Vibrio cholerae Acta Crystallogr F Struct Biol Commun, 74, 2018
6V5K	Crystal structure of human DNA polymerase eta complexed with N7-nitrogen half-mustard guanine (NHMG) and dCTP* Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*AP*GP*TP*GP*TP*GP*AP*G)-3'), DNA (5'-D(*CP*AP*T*(QRV)P*CP*TP*CP*AP*CP*AP*CP*T)-3'), ... Authors: Jung, H, Lee, S. Deposit date: 2019-12-04 Release date: 2020-12-09 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.69 Å) Cite: Crystal structure of human DNA polymerase eta complexed with N7-nitrogen half-mustard guanine (NHMG) and dCTP* To Be Published
6VG6	Crystal structure of DPO4 with 8-oxoadenine (oxoA) and dGTP* Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3'), DNA (5'-D(*TP*CP*AP*TP*(A38)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), ... Authors: Jung, H, Lee, S. Deposit date: 2020-01-07 Release date: 2021-01-06 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.08 Å) Cite: Promutagenic bypass of 7,8-dihydro-8-oxoadenine by translesion synthesis DNA polymerase Dpo4. Biochem.J., 477, 2020
6VGM	Crystal structure of DPO4 with 8-oxoadenine (oxoA) and dTTP* Descriptor: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3'), DNA (5'-D(*TP*CP*AP*TP*(A38)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), ... Authors: Jung, H, Lee, S. Deposit date: 2020-01-08 Release date: 2021-01-06 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.84 Å) Cite: Promutagenic bypass of 7,8-dihydro-8-oxoadenine by translesion synthesis DNA polymerase Dpo4. Biochem.J., 477, 2020
5WCV	AsK132958: A minimal homologue of ShK identified in the transcriptome of Anemonia sulcata Descriptor: ShK homolog AsK132958 Authors: Krishnarjuna, B, MacRaild, C.A, Norton, R.S. Deposit date: 2017-07-02 Release date: 2017-10-25 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Structure, folding and stability of a minimal homologue from Anemonia sulcata of the sea anemone potassium channel blocker ShK. Peptides, 99, 2018
5ZJN	Structure of N-acetylmannosamine-6-phosphate-2-epimerase from Vibrio cholerae with N-acetylmannosamine-6-phosphate Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, N-acetylmannosamine-6-phosphate, ... Authors: Manjunath, L, Guntupalli, S. Deposit date: 2018-03-21 Release date: 2018-09-19 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.66 Å) Cite: Crystal structures and kinetic analyses of N-acetylmannosamine-6-phosphate 2-epimerases from Fusobacterium nucleatum and Vibrio cholerae Acta Crystallogr F Struct Biol Commun, 74, 2018
3U54	Crystal structure (Type-1) of SAICAR synthetase from Pyrococcus horikoshii OT3 Descriptor: 1,4-BUTANEDIOL, ACETATE ION, CADMIUM ION, ... Authors: Manjunath, K, Kanaujia, S.P, Kanagaraj, S, Jeyakanthan, J, Sekar, K. Deposit date: 2011-10-11 Release date: 2012-10-17 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Structure of SAICAR synthetase from Pyrococcus horikoshii OT3: insights into thermal stability Int.J.Biol.Macromol., 53, 2013
384D	HYDRATION AND RECOGNITION OF METHYLATED CPG STEPS IN DNA Descriptor: 5'-D(*CP*(5CM)P*GP*CP*(5CM)P*GP*GP*(5CM)P*GP*G)-3', MAGNESIUM ION Authors: Mayer-Jung, C, Moras, D, Timsit, Y. Deposit date: 1998-03-02 Release date: 1998-03-10 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Hydration and Recognition of Methylated CpG Steps in DNA Embo J., 17, 1998
329D	EFFECT OF CYTOSINE METHYLATION ON DNA-DNA RECOGNITION AT CPG STEPS Descriptor: DNA (5'-D(*AP*CP*CP*GP*CP*(5CM)P*GP*GP*CP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*GP*CP*(5CM)P*GP*GP*CP*GP*GP*T)-3') Authors: Mayer-Jung, C, Moras, D, Timsit, Y. Deposit date: 1997-04-29 Release date: 1997-04-30 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Effect of cytosine methylation on DNA-DNA recognition at CpG steps. J.Mol.Biol., 270, 1997
382D	HYDRATION AND RECOGNITION OF METHYLATED CPG STEPS IN DNA. Descriptor: DNA (5'-D(*CP*CP*GP*CP*CP*GP*GP*CP*GP*G)-3'), MAGNESIUM ION Authors: Mayer-Jung, C, Moras, D, Timsit, Y. Deposit date: 1998-03-02 Release date: 1999-10-14 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Hydration and recognition of methylated CpG steps in DNA. EMBO J., 17, 1998
383D	Hydration and recognition of methylated CPG steps in DNA Descriptor: DNA (5'-D(*CP*(5CM)P*GP*CP*(5CM)P*GP*GP*(5CM)P*GP*G)-3'), MAGNESIUM ION Authors: Mayer-Jung, C, Moras, D, Timsit, Y. Deposit date: 1998-03-02 Release date: 1998-04-08 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Hydration and Recognition of Methylated Cpg Steps in DNA Embo J., 17, 1998
3L18	Ton1285, an Intracellular Protease from Thermococcus onnurineus NA1 Descriptor: Intracellular protease I Authors: Jung, H.J, Cha, S.S. Deposit date: 2009-12-11 Release date: 2010-12-15 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Structure Based Classification of the DJ-1 Superfamily: The Relationship between Homologous Structures and Various Functions To be Published
6F34	Crystal structure of a bacterial cationic amino acid transporter (CAT) homologue bound to Arginine. Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, ARGININE, Amino acid transporter, ... Authors: Jungnickel, K.E.J, Newstead, S. Deposit date: 2017-11-27 Release date: 2018-02-14 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (3.13 Å) Cite: Structural basis for amino acid transport by the CAT family of SLC7 transporters. Nat Commun, 9, 2018
8Q40	Crystal structure of cA4 activated Can2 in complex with a cleaved DNA substrate Descriptor: Cyclic tetraadenosine monophosphate (cA4), DNA (5'-D(*TP*CP*A)-3'), DUF1887 family protein, ... Authors: Jungfer, K, Sigg, A, Jinek, M. Deposit date: 2023-08-04 Release date: 2023-11-22 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.21 Å) Cite: Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2. Nucleic Acids Res., 52, 2024
8Q41	Crystal structure of Can2 (E341A) bound to cA4 and TTTAAA ssDNA Descriptor: Cyclic tetraadenosine monophosphate (cA4), DNA (5'-D(*TP*TP*AP*AP*A)-3'), DUF1887 family protein, ... Authors: Jungfer, K, Sigg, A, Jinek, M. Deposit date: 2023-08-04 Release date: 2023-11-22 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.38 Å) Cite: Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2. Nucleic Acids Res., 52, 2024
8Q42	Crystal structure of cA4-bound Can2 (E341A) in complex with oligo-A DNA Descriptor: Cyclic tetraadenosine monophosphate (cA4), DNA (5'-D(*AP*AP*AP*A)-3'), DUF1887 family protein, ... Authors: Jungfer, K, Sigg, A, Jinek, M. Deposit date: 2023-08-04 Release date: 2023-11-22 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.97 Å) Cite: Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2. Nucleic Acids Res., 52, 2024
8Q43	Crystal structure of cA4-bound Can2 (E341A) in complex with oligo-C DNA Descriptor: Cyclic tetraadenosine monophosphate (cA4), DNA (5'-D(*CP*CP*CP*CP*C)-3'), DUF1887 family protein, ... Authors: Jungfer, K, Sigg, A, Jinek, M. Deposit date: 2023-08-04 Release date: 2023-11-22 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.28 Å) Cite: Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2. Nucleic Acids Res., 52, 2024
8Q44	Crystal structure of cA4-bound Can2 (E364R) in complex with oligo-T DNA Descriptor: Cyclic tetraadenosine monophosphate (cA4), DNA (5'-D(*TP*TP*T)-3'), DUF1887 family protein, ... Authors: Jungfer, K, Sigg, A, Jinek, M. Deposit date: 2023-08-04 Release date: 2023-11-22 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2. Nucleic Acids Res., 52, 2024
8Q3Z	Crystal structure of cA4-bound Can2 from Thermoanaerobacter brockii Descriptor: Cyclic tetraadenosine monophosphate (cA4), DUF1887 family protein, MANGANESE (II) ION Authors: Jungfer, K, Sigg, A, Jinek, M. Deposit date: 2023-08-04 Release date: 2023-11-22 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (3.15 Å) Cite: Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2. Nucleic Acids Res., 52, 2024
8Q3Y	Crystal structure of apo Can2 from Thermoanaerobacter brockii Descriptor: DUF1887 family protein Authors: Jungfer, K, Sigg, A, Jinek, M. Deposit date: 2023-08-04 Release date: 2023-11-22 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.52 Å) Cite: Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2. Nucleic Acids Res., 52, 2024
4O7W	SAICAR synthetase (Type-2) in complex with ATP and TDP Descriptor: ACETATE ION, ADENOSINE-5'-TRIPHOSPHATE, PHOSPHATE ION, ... Authors: Manjunath, K, Jeyakanthan, J, Sekar, K. Deposit date: 2013-12-26 Release date: 2014-12-31 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.2 Å) Cite: SAICAR synthetase (Type-2) in complex with ATP and TDP To be Published
4O7V	SAICAR synthetase (Type-2) in complex with ADP and UDP/UMP Descriptor: ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, PHOSPHATE ION, ... Authors: Manjunath, K, Jeyakanthan, J, Sekar, K. Deposit date: 2013-12-26 Release date: 2014-12-31 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.3 Å) Cite: SAICAR synthetase (Type-2) in complex with ADP and UDP/UMP To be Published
4O83	SAICAR synthetase (Type-1) in complex with ADP/AMP Descriptor: 1,4-BUTANEDIOL, ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ... Authors: Manjunath, K, Jeyakanthan, J, Sekar, K. Deposit date: 2013-12-26 Release date: 2014-12-31 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (2.05 Å) Cite: SAICAR synthetase (Type-1) in complex with ADP/AMP To be Published
4O7L	SAICAR synthetase (Type-2) in complex with ADP Descriptor: ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... Authors: Manjunath, K, Jeyakanthan, J, Sekar, K. Deposit date: 2013-12-25 Release date: 2014-12-31 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.1 Å) Cite: SAICAR synthetase (Type-2) in complex with ADP To be Published

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