PDB: 302 resultsInfo pagesStatus searchChemie searchBIRD

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4J2B	RB69 DNA Polymerase L415G Ternary Complex Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*T)-3'), ... Authors: Xia, S, Wang, J, Konigsberg, W.H. Deposit date: 2013-02-04 Release date: 2014-02-19 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.04 Å) Cite: Alteration in the cavity size adjacent to the active site of RB69 DNA polymerase changes its conformational dynamics. Nucleic Acids Res., 41, 2013
4FJL	RB69 DNA polymerase ternary complex with dGTP/dA Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... Authors: Xia, S, Wang, J, Konigsberg, W.H. Deposit date: 2012-06-11 Release date: 2012-12-19 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.87 Å) Cite: DNA mismatch synthesis complexes provide insights into base selectivity of a B family DNA polymerase. J.Am.Chem.Soc., 135, 2013
4FLY	Pyrococcus abyssi B family DNA polymerase bound to a dsDNA, in edition mode Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA polymerase 1, MAGNESIUM ION, ... Authors: Gouge, J, Delarue, M. Deposit date: 2012-06-15 Release date: 2012-08-29 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Molecular Recognition of Canonical and Deaminated Bases by P. abyssi Family B DNA Polymerase. J.Mol.Biol., 423, 2012
4FJI	RB69 DNA polymerase ternary complex with dcTP/dC Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... Authors: Xia, S, Wang, J, Konigsberg, W.H. Deposit date: 2012-06-11 Release date: 2012-12-19 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.2 Å) Cite: DNA mismatch synthesis complexes provide insights into base selectivity of a B family DNA polymerase. J.Am.Chem.Soc., 135, 2013
4FJ9	RB69 DNA polymerase ternary complex with dTTP/dT Descriptor: CALCIUM ION, DNA polymerase, DNA primer, ... Authors: Xia, S, Wang, J, Konigsberg, W.H. Deposit date: 2012-06-11 Release date: 2012-12-19 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.97 Å) Cite: DNA mismatch synthesis complexes provide insights into base selectivity of a B family DNA polymerase. J.Am.Chem.Soc., 135, 2013
4FJX	RB69 DNA polymerase ternary complex with dATP/dG Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... Authors: Xia, S, Wang, J, Konigsberg, W.H. Deposit date: 2012-06-12 Release date: 2012-12-19 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.11 Å) Cite: DNA mismatch synthesis complexes provide insights into base selectivity of a B family DNA polymerase. J.Am.Chem.Soc., 135, 2013
4FLX	Pyrococcus abyssi B family DNA polymerase bound to a dsDNA, in edition mode Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA polymerase 1, GLYCEROL, ... Authors: Gouge, J, Delarue, M. Deposit date: 2012-06-15 Release date: 2012-08-29 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Molecular Recognition of Canonical and Deaminated Bases by P. abyssi Family B DNA Polymerase. J.Mol.Biol., 423, 2012
4FJG	RB69 DNA polymerase ternary complex with dATP/dC Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... Authors: Xia, S, Wang, J, Konigsberg, W.H. Deposit date: 2012-06-11 Release date: 2012-12-19 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.02 Å) Cite: DNA mismatch synthesis complexes provide insights into base selectivity of a B family DNA polymerase. J.Am.Chem.Soc., 135, 2013
4FK0	RB69 DNA polymerase ternary complex with dCTP/dG Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... Authors: Xia, S, Wang, J, Konigsberg, W.H. Deposit date: 2012-06-12 Release date: 2012-12-19 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.18 Å) Cite: DNA mismatch synthesis complexes provide insights into base selectivity of a B family DNA polymerase. J.Am.Chem.Soc., 135, 2013
4FJH	RB69 DNA polymerase ternary complex with dGTP/dC Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... Authors: Xia, S, Wang, J, Konigsberg, W.H. Deposit date: 2012-06-11 Release date: 2012-12-19 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.11 Å) Cite: DNA mismatch synthesis complexes provide insights into base selectivity of a B family DNA polymerase. J.Am.Chem.Soc., 135, 2013
4FLW	Pyrococcus abyssi B family DNA polymerase bound to a dsDNA, in edition mode Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA polymerase 1, GLYCEROL, ... Authors: Gouge, J, Delarue, M. Deposit date: 2012-06-15 Release date: 2012-08-29 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Molecular Recognition of Canonical and Deaminated Bases by P. abyssi Family B DNA Polymerase. J.Mol.Biol., 423, 2012
4FJJ	RB69 DNA polymerase ternary complex with dTTP/dC Descriptor: CALCIUM ION, DNA polymerase, DNA primer, ... Authors: Xia, S, Wang, J, Konigsberg, W.H. Deposit date: 2012-06-11 Release date: 2012-12-19 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.99 Å) Cite: DNA mismatch synthesis complexes provide insights into base selectivity of a B family DNA polymerase. J.Am.Chem.Soc., 135, 2013
4FJ7	RB69 DNA polymerase ternary complex with dGTP/dT Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... Authors: Xia, S, Wang, J, Konigsberg, W.H. Deposit date: 2012-06-11 Release date: 2012-12-19 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.9 Å) Cite: DNA mismatch synthesis complexes provide insights into base selectivity of a B family DNA polymerase. J.Am.Chem.Soc., 135, 2013
4FK4	RB69 DNA polymerase ternary complex with dGTP/dG Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... Authors: Xia, S, Wang, J, Konigsberg, W.H. Deposit date: 2012-06-12 Release date: 2012-12-19 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.9 Å) Cite: DNA mismatch synthesis complexes provide insights into base selectivity of a B family DNA polymerase. J.Am.Chem.Soc., 135, 2013
4FM2	Pyrococcus abyssi B family DNA polymerase (triple mutant) bound to a dsDNA, in edition mode Descriptor: DNA polymerase 1, GLYCEROL, MAGNESIUM ION, ... Authors: Gouge, J, Delarue, M. Deposit date: 2012-06-15 Release date: 2012-08-29 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Molecular Recognition of Canonical and Deaminated Bases by P. abyssi Family B DNA Polymerase. J.Mol.Biol., 423, 2012
4FLT	Pyrococcus abyssi B family DNA polymerase bound to a dsDNA, in edition mode Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA polymerase 1, GLYCEROL, ... Authors: Gouge, J, Delarue, M. Deposit date: 2012-06-15 Release date: 2012-08-29 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Molecular Recognition of Canonical and Deaminated Bases by P. abyssi Family B DNA Polymerase. J.Mol.Biol., 423, 2012
4FM1	Pyrococcus abyssi B family DNA polymerase bound to a dsDNA, in edition mode Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA polymerase 1, GLYCEROL, ... Authors: Gouge, J, Delarue, M. Deposit date: 2012-06-15 Release date: 2012-08-29 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3 Å) Cite: Molecular Recognition of Canonical and Deaminated Bases by P. abyssi Family B DNA Polymerase. J.Mol.Biol., 423, 2012
4FJ8	RB69 DNA polymerase ternary complex with dCTP/dT Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... Authors: Xia, S, Wang, J, Konigsberg, W.H. Deposit date: 2012-06-11 Release date: 2012-12-19 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.19 Å) Cite: DNA mismatch synthesis complexes provide insights into base selectivity of a B family DNA polymerase. J.Am.Chem.Soc., 135, 2013
4J2D	RB69 DNA Polymerase L415K Ternary Complex Descriptor: CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*T)-3'), DNA (5'-D(*TP*CP*GP*AP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), ... Authors: Xia, S, Wang, J, Konigsberg, W.H. Deposit date: 2013-02-04 Release date: 2014-02-19 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.76 Å) Cite: Role of L415 in the Replication of RB69 DNA Polymerase To be Published
4J2E	RB69 DNA Polymerase L415M Ternary Complex Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*G)-3'), ... Authors: Xia, S, Wang, J, Konigsberg, W.H. Deposit date: 2013-02-04 Release date: 2014-02-19 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.02 Å) Cite: Alteration in the cavity size adjacent to the active site of RB69 DNA polymerase changes its conformational dynamics. Nucleic Acids Res., 41, 2013
4J2A	RB69 DNA Polymerase L415A Ternary Complex Descriptor: CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*C)-3'), DNA (5'-D(*TP*CP*GP*AP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), ... Authors: Xia, S, Wang, J, Konigsberg, W.H. Deposit date: 2013-02-04 Release date: 2014-02-19 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Alteration in the cavity size adjacent to the active site of RB69 DNA polymerase changes its conformational dynamics. Nucleic Acids Res., 41, 2013
4K8Z	KOD Polymerase in binary complex with dsDNA Descriptor: 1,2-ETHANEDIOL, COBALT HEXAMMINE(III), DNA (5'-D(*AP*AP*AP*TP*TP*CP*GP*CP*AP*GP*TP*TP*CP*GP*CP*G)-3'), ... Authors: Bergen, K, Betz, K, Welte, W, Diederichs, K, Marx, A. Deposit date: 2013-04-19 Release date: 2013-06-26 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.29 Å) Cite: Structures of KOD and 9N DNA Polymerases Complexed with Primer Template Duplex Chembiochem, 14, 2013
4KHW	Ternary complex of RB69 mutant L415F with ribonucleotide at -2 position Descriptor: CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*C)-3'), DNA polymerase, ... Authors: Clausen, A.R, Pedersen, L.C. Deposit date: 2013-05-01 Release date: 2013-10-09 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.371 Å) Cite: Structure-function analysis of ribonucleotide bypass by B family DNA replicases. Proc.Natl.Acad.Sci.USA, 110, 2013
4KI6	Ternary complex of rb69 mutant l415f with ribonucleotides at -1 and -2 position Descriptor: CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*C)-3'), DNA polymerase, ... Authors: Clausen, A.R, Pedersen, L.C. Deposit date: 2013-05-01 Release date: 2013-10-09 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Structure-function analysis of ribonucleotide bypass by B family DNA replicases. Proc.Natl.Acad.Sci.USA, 110, 2013
4M3W	RB69 DNA polymerase ternary complex with dT/dG at position n-4 of primer/template duplex Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... Authors: Xia, S, Konigsberg, W.H. Deposit date: 2013-08-06 Release date: 2014-02-12 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant. Protein Sci., 23, 2014

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