Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

9B36
DownloadVisualize
BU of 9b36 by Molmil
Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two concanavalin A dimers. Composite map.
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I.
Deposit date:2024-03-18
Release date:2024-05-22
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (4.29 Å)
Cite:Kainate receptor channel opening and gating mechanism.
Nature, 2024
9B33
DownloadVisualize
BU of 9b33 by Molmil
Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one ConA dimer. Type II interface between GluK2 ligand-binding domain and ConA
Descriptor: CALCIUM ION, Concanavalin V, ZINC ION
Authors:Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I.
Deposit date:2024-03-18
Release date:2024-05-22
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (4.07 Å)
Cite:Kainate receptor channel opening and gating mechanism.
Nature, 2024
9B37
DownloadVisualize
BU of 9b37 by Molmil
Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one concanavalin A dimer. Composite map.
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I.
Deposit date:2024-03-18
Release date:2024-05-22
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (6.66 Å)
Cite:Kainate receptor channel opening and gating mechanism.
Nature, 2024
8UX7
DownloadVisualize
BU of 8ux7 by Molmil
Dioclea megacarpa lectin (DmegA) complexed with X-Man
Descriptor: 5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside, CALCIUM ION, Dioclea megacarpa lectin, ...
Authors:Oliveira, M.V, De Sloover, G, Osterne, V.J.S, Pinto-Junior, V.R, Sacramento-Neto, J.C, Van Damme, E.J.M, Nascimento, K.S, Cavada, B.S.
Deposit date:2023-11-09
Release date:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Dioclea megacarpa lectin (DmegA) complexed with X-Man
To Be Published
8WMK
DownloadVisualize
BU of 8wmk by Molmil
Structure of ConA/Man2
Descriptor: 4-[3-(4-carboxyphenyl)phenyl]benzoic acid, CALCIUM ION, Concanavalin-A, ...
Authors:Li, L, Chen, G.
Deposit date:2023-10-03
Release date:2023-12-06
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Rational design of inducing ligands with three-dimensional supramolecular interactions to build protein crystalline frameworks.
To Be Published
8WMG
DownloadVisualize
BU of 8wmg by Molmil
Structure of ConA/Man3
Descriptor: 4-[3,5-bis(4-carboxyphenyl)phenyl]benzoic acid, CALCIUM ION, Concanavalin-A, ...
Authors:Li, L, Chen, G.
Deposit date:2023-10-03
Release date:2023-12-06
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Rational design of inducing ligands with three-dimensional supramolecular interactions to build protein crystalline frameworks.
To Be Published
8I7Q
DownloadVisualize
BU of 8i7q by Molmil
Cobalt and Calcium coordinated Concanavalin A at pH 7.4 from Canavalia ensiformis
Descriptor: CALCIUM ION, COBALT (II) ION, Concanavalin A
Authors:Hwang, Y, Jeong, J.H, Lee, S.J.
Deposit date:2023-02-01
Release date:2023-12-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:Selective interactions of Co 2+ -Ca 2+ -concanavalin A with high mannose N -glycans.
Dalton Trans, 53, 2024
7UOD
DownloadVisualize
BU of 7uod by Molmil
Crystal structure of a lectin from Canavalia maritima seed (ConM) complexed with 2,4-dichloro-phenoxyacetic acid
Descriptor: (2,4-DICHLOROPHENOXY)ACETIC ACID, CALCIUM ION, CHLORIDE ION, ...
Authors:Sousa, J.P, Bezerra, E.H.S, Sales, M.V, Queiroz, P.P, da Silva, F.M.S, Carvalho, C.P.S, Freire, V.N, Rocha, B.A.M.
Deposit date:2022-04-12
Release date:2023-04-19
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural analysis of Canavalia maritima lectin complexed with auxins
To Be Published
7UN2
DownloadVisualize
BU of 7un2 by Molmil
Crystal structure of a lectin from Canavalia maritima seed (ConM) complexed with Indole-3-butyric acid
Descriptor: 3-INDOLEBUTYRIC ACID, CALCIUM ION, CHLORIDE ION, ...
Authors:de Sousa, J.P, Bezerra, E.H.S, Sales, M.V, Queiroz, P.P, da Silva, F.M.S, Carvalho, C.P.S, Freire, V.N, Rocha, B.A.M.
Deposit date:2022-04-08
Release date:2023-04-19
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural analysis of Canavalia maritima lectin complexed with auxins
To Be Published
7MGD
DownloadVisualize
BU of 7mgd by Molmil
Concanavalin A bound to a DNA glycoconjugate, T(Man-T)TT
Descriptor: CALCIUM ION, Concanavalin-A, MANGANESE (II) ION, ...
Authors:Partridge, B.E, Winegar, P.H, Mirkin, C.A.
Deposit date:2021-04-12
Release date:2021-06-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Redefining Protein Interfaces within Protein Single Crystals with DNA.
J.Am.Chem.Soc., 143, 2021
7MGA
DownloadVisualize
BU of 7mga by Molmil
Concanavalin A bound to a DNA glycoconjugate, Man-AAATTT
Descriptor: 3-{[2-(2-hydroxyethoxy)ethyl]amino}-4-[(6-hydroxyhexyl)amino]cyclobut-3-ene-1,2-dione, CALCIUM ION, Concanavalin-A, ...
Authors:Partridge, B.E, Winegar, P.H, Mirkin, C.A.
Deposit date:2021-04-12
Release date:2021-06-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Redefining Protein Interfaces within Protein Single Crystals with DNA.
J.Am.Chem.Soc., 143, 2021
7MG4
DownloadVisualize
BU of 7mg4 by Molmil
Concanavalin A crystallized in the presence of Gal-ATAT
Descriptor: CALCIUM ION, Concanavalin-A, MANGANESE (II) ION
Authors:Partridge, B.E, Winegar, P.H, Mirkin, C.A.
Deposit date:2021-04-12
Release date:2021-06-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Redefining Protein Interfaces within Protein Single Crystals with DNA.
J.Am.Chem.Soc., 143, 2021
7MG3
DownloadVisualize
BU of 7mg3 by Molmil
Concanavalin A crystallized in the presence of H2N-ATAT
Descriptor: CALCIUM ION, Concanavalin-A, MANGANESE (II) ION
Authors:Partridge, B.E, Winegar, P.H, Mirkin, C.A.
Deposit date:2021-04-12
Release date:2021-06-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Redefining Protein Interfaces within Protein Single Crystals with DNA.
J.Am.Chem.Soc., 143, 2021
7MG6
DownloadVisualize
BU of 7mg6 by Molmil
Concanavalin A bound to a DNA glycoconjugate, Man-AGCT
Descriptor: 3-{[2-(2-hydroxyethoxy)ethyl]amino}-4-[(6-hydroxyhexyl)amino]cyclobut-3-ene-1,2-dione, CALCIUM ION, Concanavalin-A, ...
Authors:Partridge, B.E, Winegar, P.H, Mirkin, C.A.
Deposit date:2021-04-12
Release date:2021-06-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Redefining Protein Interfaces within Protein Single Crystals with DNA.
J.Am.Chem.Soc., 143, 2021
7MGC
DownloadVisualize
BU of 7mgc by Molmil
Concanavalin A bound to a DNA glycoconjugate, G(Man-T)AC
Descriptor: CALCIUM ION, Concanavalin-A, MANGANESE (II) ION, ...
Authors:Partridge, B.E, Winegar, P.H, Mirkin, C.A.
Deposit date:2021-04-12
Release date:2021-06-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.92 Å)
Cite:Redefining Protein Interfaces within Protein Single Crystals with DNA.
J.Am.Chem.Soc., 143, 2021
7MG1
DownloadVisualize
BU of 7mg1 by Molmil
Concanavalin A crystallized without DNA glycoconjugate
Descriptor: CALCIUM ION, Concanavalin-A, MANGANESE (II) ION
Authors:Partridge, B.E, Winegar, P.H, Mirkin, C.A.
Deposit date:2021-04-12
Release date:2021-06-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Redefining Protein Interfaces within Protein Single Crystals with DNA.
J.Am.Chem.Soc., 143, 2021
7MG5
DownloadVisualize
BU of 7mg5 by Molmil
Concanavalin A bound to a DNA glycoconjugate, Man-ATAT
Descriptor: 3-{[2-(2-hydroxyethoxy)ethyl]amino}-4-[(6-hydroxyhexyl)amino]cyclobut-3-ene-1,2-dione, CALCIUM ION, Concanavalin-A, ...
Authors:Partridge, B.E, Winegar, P.H, Mirkin, C.A.
Deposit date:2021-04-12
Release date:2021-06-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Redefining Protein Interfaces within Protein Single Crystals with DNA.
J.Am.Chem.Soc., 143, 2021
7MG8
DownloadVisualize
BU of 7mg8 by Molmil
Concanavalin A bound to a DNA glycoconjugate, Man-CGCG
Descriptor: 3-{[2-(2-hydroxyethoxy)ethyl]amino}-4-[(6-hydroxyhexyl)amino]cyclobut-3-ene-1,2-dione, CALCIUM ION, Concanavalin-A, ...
Authors:Partridge, B.E, Winegar, P.H, Mirkin, C.A.
Deposit date:2021-04-12
Release date:2021-06-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:Redefining Protein Interfaces within Protein Single Crystals with DNA.
J.Am.Chem.Soc., 143, 2021
7MGB
DownloadVisualize
BU of 7mgb by Molmil
Concanavalin A bound to a DNA glycoconjugate, A(Man-T)AT
Descriptor: CALCIUM ION, Concanavalin-A, MANGANESE (II) ION, ...
Authors:Partridge, B.E, Winegar, P.H, Mirkin, C.A.
Deposit date:2021-04-12
Release date:2021-06-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Redefining Protein Interfaces within Protein Single Crystals with DNA.
J.Am.Chem.Soc., 143, 2021
7MG9
DownloadVisualize
BU of 7mg9 by Molmil
Concanavalin A bound to DNA glycoconjugates, Man-TTTT and Man-AAAA
Descriptor: 3-{[2-(2-hydroxyethoxy)ethyl]amino}-4-[(6-hydroxyhexyl)amino]cyclobut-3-ene-1,2-dione, CALCIUM ION, Concanavalin-A, ...
Authors:Partridge, B.E, Winegar, P.H, Mirkin, C.A.
Deposit date:2021-04-12
Release date:2021-06-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Redefining Protein Interfaces within Protein Single Crystals with DNA.
J.Am.Chem.Soc., 143, 2021
7MG2
DownloadVisualize
BU of 7mg2 by Molmil
Concanavalin A crystallized in the presence of Man-8
Descriptor: CALCIUM ION, Concanavalin-A, MANGANESE (II) ION
Authors:Partridge, B.E, Winegar, P.H, Mirkin, C.A.
Deposit date:2021-04-12
Release date:2021-06-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Redefining Protein Interfaces within Protein Single Crystals with DNA.
J.Am.Chem.Soc., 143, 2021
7MG7
DownloadVisualize
BU of 7mg7 by Molmil
Concanavalin A bound to a DNA glycoconjugate, Man-GTAC
Descriptor: 3-{[2-(2-hydroxyethoxy)ethyl]amino}-4-[(6-hydroxyhexyl)amino]cyclobut-3-ene-1,2-dione, CALCIUM ION, Concanavalin-A, ...
Authors:Partridge, B.E, Winegar, P.H, Mirkin, C.A.
Deposit date:2021-04-12
Release date:2021-06-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Redefining Protein Interfaces within Protein Single Crystals with DNA.
J.Am.Chem.Soc., 143, 2021
7LJG
DownloadVisualize
BU of 7ljg by Molmil
Crystal Structure of Lectin from Dioclea altissima
Descriptor: Lectin, MANGANESE (II) ION
Authors:Vieira-Neto, A.E, Pereira, H.M, Sousa, F.D, Goncalves, N.G.G, Vieira, N.C.G, Monteiro-Moreira, A.C.O, Moereira, R.A.
Deposit date:2021-01-29
Release date:2022-02-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Crystal Structure of Lectin from Dioclea altissima
To Be Published
6XT6
DownloadVisualize
BU of 6xt6 by Molmil
pro-concanavalin A: Precursor of circularly permuted concanavalin A
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Concanavalin-A, ...
Authors:Nonis, S.G, Haywood, J, Schmidberger, J.W, Bond, C.S.
Deposit date:2020-07-17
Release date:2020-11-11
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.103 Å)
Cite:Structural and biochemical analyses of concanavalin A circular permutation by jack bean asparaginyl endopeptidase.
Plant Cell, 33, 2021
6VGF
DownloadVisualize
BU of 6vgf by Molmil
Peanut lectin complexed with divalent S-beta-D-thiogalactopyranosyl beta-D-glucopyranoside derivative (diSTGD)
Descriptor: (2S,3R,4S,5R,6S)-2-(hydroxymethyl)-6-{[(2S,3R,4S,5S,6S)-3,4,5-trihydroxy-6-({[(1-{[(2R,3S,4S,5R,6R)-3,4,5-trihydroxy-6-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-({4-[({[(2S,3S,4S,5R,6S)-3,4,5-trihydroxy-6-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]sulfanyl}tetrahydro-2H-pyran-2-yl]methyl}sulfanyl)methyl]-1H-1,2,3-triazol-1-yl}methyl)tetrahydro-2H-pyran-2-yl]oxy}tetrahydro-2H-pyran-2-yl]methyl}-1H-1,2,3-triazol-4-yl)methyl]sulfanyl}methyl)tetrahydro-2H-pyran-2-yl]sulfanyl}tetrahydro-2H-pyran-3,4,5-triol, CALCIUM ION, Galactose-binding lectin, ...
Authors:Otero, L.H, Primo, E.D, Cagnoni, A.J, Cano, M.E, Klinke, S, Goldbaum, F.A, Uhrig, M.L.
Deposit date:2020-01-08
Release date:2020-10-28
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Crystal structures of peanut lectin in the presence of synthetic beta-N- and beta-S-galactosides disclose evidence for the recognition of different glycomimetic ligands.
Acta Crystallogr D Struct Biol, 76, 2020

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon