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4JZT
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Crystal structure of the Bacillus subtilis pyrophosphohydrolase BsRppH (E68A mutant) bound to GTP
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, dGTP pyrophosphohydrolase
Authors:Piton, J, Larue, V, Thillier, Y, Dorleans, A, Pellegrini, O, Li de la Sierra-Gallay, I, Vasseur, J.J, Debart, F, Tisne, C, Condon, C.
Deposit date:2013-04-03
Release date:2013-05-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Bacillus subtilis RNA deprotection enzyme RppH recognizes guanosine in the second position of its substrates.
Proc.Natl.Acad.Sci.USA, 110, 2013
4JZV
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Crystal structure of the Bacillus subtilis pyrophosphohydrolase BsRppH bound to a non-hydrolysable triphosphorylated dinucleotide RNA (pcp-pGpG) - second guanosine residue in guanosine binding pocket
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, MAGNESIUM ION, RNA (5'-R(*(GCP)P*G)-3'), ...
Authors:Piton, J, Larue, V, Thillier, Y, Dorleans, A, Pellegrini, O, Li de la Sierra-Gallay, I, Vasseur, J.J, Debart, F, Tisne, C, Condon, C.
Deposit date:2013-04-03
Release date:2013-05-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Bacillus subtilis RNA deprotection enzyme RppH recognizes guanosine in the second position of its substrates.
Proc.Natl.Acad.Sci.USA, 110, 2013
2GT2
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BU of 2gt2 by Molmil
Structure of the E. coli GDP-mannose mannosyl hydrolase
Descriptor: GDP-mannose mannosyl hydrolase
Authors:Gabelli, S.B, Bianchet, M.A, Azurmendi, H.F, MIldvan, A.S, Amzel, L.M.
Deposit date:2006-04-27
Release date:2006-12-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:X-ray, NMR, and mutational studies of the catalytic cycle of the GDP-mannose mannosyl hydrolase reaction.
Biochemistry, 45, 2006
2FVV
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BU of 2fvv by Molmil
Human Diphosphoinositol polyphosphate phosphohydrolase 1
Descriptor: CHLORIDE ION, Diphosphoinositol polyphosphate phosphohydrolase 1, INOSITOL HEXAKISPHOSPHATE, ...
Authors:Hallberg, B.M, Kursula, P, Ogg, D, Arrowsmith, C, Berglund, H, Edwards, A, Ehn, M, Flodin, S, Graslund, S, Hammarstrom, M, Hogbom, M, Holmberg-Schiavone, L, Kotenyova, T, Nilsson-Ehle, P, Nordlund, P, Nyman, T, Sagemark, J, Stenmark, P, Sundstrom, M, Thorsell, A.G, van den Berg, S, Weigelt, J, Persson, C, Structural Genomics Consortium (SGC)
Deposit date:2006-01-31
Release date:2006-03-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Crystal structure of human diphosphoinositol phosphatase 1
Proteins, 77, 2009
5MZE
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BU of 5mze by Molmil
Crystal structure of mouse MTH1 with 8-oxo-dGTP
Descriptor: 7,8-dihydro-8-oxoguanine triphosphatase, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, COPPER (II) ION, ...
Authors:Narwal, M, Jemth, A.-S, Helleday, T, Stenmark, P.
Deposit date:2017-01-31
Release date:2018-01-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures and Inhibitor Interactions of Mouse and Dog MTH1 Reveal Species-Specific Differences in Affinity.
Biochemistry, 57, 2018
2GT4
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BU of 2gt4 by Molmil
Crystal Structure of the Y103F mutant of the GDP-mannose mannosyl hydrolase in complex with GDP-mannose and MG+2
Descriptor: GDP-mannose mannosyl hydrolase, GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE, MAGNESIUM ION, ...
Authors:Gabelli, S.B, Bianchet, M.A, Azurmendi, H.F, Mildvan, A.S, Amzel, L.A.
Deposit date:2006-04-27
Release date:2006-12-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:X-ray, NMR, and mutational studies of the catalytic cycle of the GDP-mannose mannosyl hydrolase reaction.
Biochemistry, 45, 2006
2G73
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Y104F mutant type 1 IPP isomerase complex with EIPP
Descriptor: 4-HYDROXY-3-METHYL BUTYL DIPHOSPHATE, Isopentenyl-diphosphate delta-isomerase, MAGNESIUM ION, ...
Authors:de Ruyck, J, Wouters, J.
Deposit date:2006-02-27
Release date:2006-04-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural role for Tyr-104 in Escherichia coli isopentenyl-diphosphate isomerase: site-directed mutagenesis, enzymology, and protein crystallography.
J.Biol.Chem., 281, 2006
2FKB
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Crystal structure of a putative enzyme (possible Nudix hydrolase) from Escherichia Coli K12
Descriptor: ACETATE ION, GLYCEROL, MAGNESIUM ION, ...
Authors:Nocek, B, Evdokimova, E, Kudritska, M, Savchenko, A, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2006-01-04
Release date:2006-02-21
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a putative enzyme (possible Nudix hydrolase) from Escherichia Coli K12
To be Published
2G74
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Y104F mutant of type 1 isopentenylpyrophosphate-dimethylallylpyrophosphate isomerase
Descriptor: Isopentenyl-diphosphate delta-isomerase, MAGNESIUM ION, MANGANESE (II) ION
Authors:de Ruyck, J, Wouters, J.
Deposit date:2006-02-27
Release date:2006-04-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structural role for Tyr-104 in Escherichia coli isopentenyl-diphosphate isomerase: site-directed mutagenesis, enzymology, and protein crystallography.
J.Biol.Chem., 281, 2006
5MP0
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BU of 5mp0 by Molmil
Human m7GpppN-mRNA Hydrolase (DCP2, NUDT20) Catalytic Domain
Descriptor: 1,2-ETHANEDIOL, m7GpppN-mRNA hydrolase
Authors:Mathea, S, Salah, E, Velupillai, S, Tallant, C, Pike, A.C.W, Bushell, S.R, Faust, B, Wang, D, Burgess-Brown, N, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Huber, K.
Deposit date:2016-12-15
Release date:2017-06-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Human m7GpppN-mRNA Hydrolase (DCP2, NUDT20) Catalytic Domain
To Be Published
4KYX
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Crystal structure of ADP-ribose pyrophosphatase MutT from Rickettsia felis
Descriptor: ADP-ribose pyrophosphatase MutT
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2013-05-29
Release date:2013-08-07
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of ADP-ribose pyrophosphatase MutT from Rickettsia felis
To be Published
5OTN
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BU of 5otn by Molmil
Crystal structure of zebrafish MTH1 in complex with O6-methyl-dGMP
Descriptor: 1,2-ETHANEDIOL, 6-O-METHYL GUANOSINE-5'-MONOPHOSPHATE, CALCIUM ION, ...
Authors:Gustafsson, R, Henriksson, L, Jemth, A.-S, Brautigam, L, Carreras Puigvert, J, Homan, E, Warpman Berglund, U, Helleday, T, Stenmark, P.
Deposit date:2017-08-22
Release date:2018-09-05
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (0.99 Å)
Cite:MutT homologue 1 (MTH1) catalyzes the hydrolysis of mutagenic O6-methyl-dGTP.
Nucleic Acids Res., 46, 2018
2I6K
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BU of 2i6k by Molmil
Crystal structure of human type I IPP isomerase complexed with a substrate analog
Descriptor: ACETIC ACID, AMINOETHANOLPYROPHOSPHATE, Isopentenyl-diphosphate delta-isomerase 1, ...
Authors:Zhang, C, Wei, Z, Gong, W.
Deposit date:2006-08-29
Release date:2007-06-05
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of human IPP isomerase: new insights into the catalytic mechanism
J.Mol.Biol., 366, 2007
2I8U
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BU of 2i8u by Molmil
GDP-mannose mannosyl hydrolase-calcium-GDP product complex
Descriptor: CALCIUM ION, GDP-mannose mannosyl hydrolase, GUANOSINE-5'-DIPHOSPHATE
Authors:Zou, Y, Li, C, Brunzelle, J.S, Nair, S.K.
Deposit date:2006-09-03
Release date:2007-06-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Molecular basis for substrate selectivity and specificity by an LPS biosynthetic enzyme
Biochemistry, 46, 2007
4KG3
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BU of 4kg3 by Molmil
Crystal structure of Saccharomyces cerevisiae Dcp2 Nudix domain in complex with Mg (E153Q mutation)
Descriptor: MAGNESIUM ION, mRNA-decapping enzyme subunit 2
Authors:Aglietti, R.A, Floor, S.N, Gross, J.D.
Deposit date:2013-04-28
Release date:2013-08-21
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Active site conformational dynamics are coupled to catalysis in the mRNA decapping enzyme dcp2.
Structure, 21, 2013
4K6E
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BU of 4k6e by Molmil
Crystal structure of Saccharomyces cerevisiae Dcp2 Nudix domain in complex with Mg
Descriptor: MAGNESIUM ION, mRNA-decapping enzyme subunit 2
Authors:Aglietti, R.A, Floor, S.N, Gross, J.D.
Deposit date:2013-04-15
Release date:2013-08-21
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Active site conformational dynamics are coupled to catalysis in the mRNA decapping enzyme dcp2.
Structure, 21, 2013
2I8T
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BU of 2i8t by Molmil
GDP-mannose mannosyl hydrolase-calcium-GDP-mannose complex
Descriptor: CALCIUM ION, GDP-mannose mannosyl hydrolase, GLYCEROL, ...
Authors:Zou, Y, Li, C, Brunzelle, J.S, Nair, S.K.
Deposit date:2006-09-03
Release date:2007-06-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Molecular basis for substrate selectivity and specificity by an LPS biosynthetic enzyme
Biochemistry, 46, 2007
2ICJ
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BU of 2icj by Molmil
The crystal structure of human isopentenyl diphophate isomerase
Descriptor: Isopentenyl-diphosphate delta isomerase, MAGNESIUM ION, SULFATE ION
Authors:Zheng, W, Bartlam, M, Rao, Z.
Deposit date:2006-09-12
Release date:2007-03-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The crystal structure of human isopentenyl diphosphate isomerase at 1.7 A resolution reveals its catalytic mechanism in isoprenoid biosynthesis
J.Mol.Biol., 366, 2007
1KT9
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BU of 1kt9 by Molmil
Crystal Structure of C. elegans Ap4A Hydrolase
Descriptor: Diadenosine Tetraphosphate Hydrolase
Authors:Bailey, S, Sedelnikova, S.E, Blackburn, G.M, Abdelghany, H.M, Baker, P.J, McLennan, A.G, Rafferty, J.B.
Deposit date:2002-01-15
Release date:2002-05-08
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:The crystal structure of diadenosine tetraphosphate hydrolase from Caenorhabditis elegans in free and binary complex forms
Structure, 10, 2002
6U9X
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BU of 6u9x by Molmil
Structure of T. brucei MERS1-RNA complex
Descriptor: Mitochondrial edited mRNA stability factor 1, RNA (5'-R(*GP*AP*GP*AP*GP*GP*GP*GP*GP*UP*U)-3')
Authors:Schumacher, M.A.
Deposit date:2019-09-09
Release date:2019-11-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structures of MERS1, the 5' processing enzyme of mitochondrial mRNAs inTrypanosoma brucei.
Rna, 26, 2020
1MP2
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BU of 1mp2 by Molmil
Structure of MT-ADPRase (Apoenzyme), a Nudix hydrolase from Mycobacterium tuberculosis
Descriptor: ADPR pyrophosphatase
Authors:Kang, L.-W, Gabelli, S.B, Bianchet, M.A, Cunningham, J.E, O'Handley, S.F, Amzel, L.M.
Deposit date:2002-09-11
Release date:2003-08-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and mechanism of MT-ADPRase, a Nudix hydrolase from Mycobacterium tuberculosis
Structure, 11, 2003
1MQE
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Structure of the MT-ADPRase in complex with gadolidium and ADP-ribose, a Nudix enzyme
Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, ADPR pyrophosphatase, GADOLINIUM ION
Authors:Kang, L.-W, Gabelli, S.B, Bianchet, M.A, Cunningham, J.E, O'Handley, S.F, Amzel, L.M.
Deposit date:2002-09-16
Release date:2003-08-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and mechanism of MT-ADPRase, a Nudix hydrolase from Mycobacterium tuberculosis
Structure, 11, 2003
6US2
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MTH1 in complex with compound 5
Descriptor: 7,8-dihydro-8-oxoguanine triphosphatase, N-[5-(2,3-dimethylphenyl)-1,2,3,4-tetrahydro-1,6-naphthyridin-7-yl]acetamide
Authors:Newby, Z.E.R, Lansdon, E.B.
Deposit date:2019-10-24
Release date:2020-04-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.80012655 Å)
Cite:Discovery of Potent and Selective MTH1 Inhibitors for Oncology: Enabling Rapid Target (In)Validation.
Acs Med.Chem.Lett., 11, 2020
1MK1
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Structure of the MT-ADPRase in complex with ADPR, a Nudix enzyme
Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, ADPR pyrophosphatase
Authors:Kang, L.-W, Gabelli, S.B, Bianchet, M.A, Cunningham, J.E, O'Handley, S.F, Amzel, L.M.
Deposit date:2002-08-28
Release date:2003-08-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and mechanism of MT-ADPRase, a Nudix hydrolase from Mycobacterium tuberculosis
Structure, 11, 2003
6US4
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MTH1 in complex with compound 32
Descriptor: 5-(2,3-dichlorophenyl)[1,2,4]triazolo[1,5-a]pyridin-2-amine, 7,8-dihydro-8-oxoguanine triphosphatase
Authors:Newby, Z.E.R, Lansdon, E.B.
Deposit date:2019-10-24
Release date:2020-04-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.95032907 Å)
Cite:Discovery of Potent and Selective MTH1 Inhibitors for Oncology: Enabling Rapid Target (In)Validation.
Acs Med.Chem.Lett., 11, 2020

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