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PDB: 338 results

3J06
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BU of 3j06 by Molmil
CryoEM Helical Reconstruction of TMV
Descriptor: 5'-R(P*AP*UP*G)-3', Coat protein
Authors:Ge, P, Zhou, Z.H.
Deposit date:2011-04-26
Release date:2011-06-01
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Hydrogen-bonding networks and RNA bases revealed by cryo electron microscopy suggest a triggering mechanism for calcium switches.
Proc.Natl.Acad.Sci.USA, 108, 2011
3J9C
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BU of 3j9c by Molmil
CryoEM single particle reconstruction of anthrax toxin protective antigen pore at 2.9 Angstrom resolution
Descriptor: CALCIUM ION, Protective antigen PA-63
Authors:Jiang, J, Pentelute, B.L, Collier, R.J, Zhou, Z.H.
Deposit date:2014-12-25
Release date:2015-03-11
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Atomic structure of anthrax protective antigen pore elucidates toxin translocation.
Nature, 521, 2015
3J9E
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BU of 3j9e by Molmil
Atomic structure of a non-enveloped virus reveals pH sensors for a coordinated process of cell entry
Descriptor: VP5
Authors:Zhang, X, Patel, A, Celma, C, Roy, P, Zhou, Z.H.
Deposit date:2015-01-10
Release date:2015-12-09
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Atomic model of a nonenveloped virus reveals pH sensors for a coordinated process of cell entry.
Nat.Struct.Mol.Biol., 23, 2016
3JB2
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Atomic model of cytoplasmic polyhedrosis virus with SAM and GTP
Descriptor: Capsid protein VP1, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Yu, X.K, Jiang, J.S, Sun, J.C, Zhou, Z.H.
Deposit date:2015-07-06
Release date:2015-08-12
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:A putative ATPase mediates RNA transcription and capping in a dsRNA virus.
Elife, 4, 2015
3J2V
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BU of 3j2v by Molmil
CryoEM structure of HBV core
Descriptor: PreC/core protein
Authors:Yu, X, Jin, L, Jih, J, Shih, C, Zhou, Z.H.
Deposit date:2013-01-11
Release date:2013-10-02
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:3.5 angstrom cryoEM Structure of Hepatitis B Virus Core Assembled from Full-Length Core Protein.
Plos One, 8, 2013
3JAY
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BU of 3jay by Molmil
Atomic model of transcribing cytoplasmic polyhedrosis virus
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Capsid protein VP1, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Yu, X.K, Jiang, J.S, Sun, J.C, Zhou, Z.H.
Deposit date:2015-07-06
Release date:2015-08-12
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3 Å)
Cite:A putative ATPase mediates RNA transcription and capping in a dsRNA virus.
Elife, 4, 2015
3JB5
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Capsid Structure of the Propionibacterium acnes Bacteriophage ATCC_Clear
Descriptor: major capsid protein
Authors:Chiou, J, Zhang, X, Marinelli, L.J, Modlin, R.L, Zhou, Z.H.
Deposit date:2015-07-23
Release date:2016-07-27
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Capsid Structure of the Propionibacterium acnes Bacteriophage ATCC_Clear
To be Published
3JB1
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BU of 3jb1 by Molmil
Atomic model of cytoplasmic polyhedrosis virus with SAM
Descriptor: Capsid protein VP1, S-ADENOSYLMETHIONINE, Structural protein VP3, ...
Authors:Yu, X.K, Jiang, J.S, Sun, J.C, Zhou, Z.H.
Deposit date:2015-07-06
Release date:2015-08-12
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:A putative ATPase mediates RNA transcription and capping in a dsRNA virus.
Elife, 4, 2015
3J9D
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BU of 3j9d by Molmil
Atomic structure of a non-enveloped virus reveals pH sensors for a coordinated process of cell entry
Descriptor: Outer capsid protein VP2, ZINC ION
Authors:Zhang, X, Patel, A, Celma, C, Roy, P, Zhou, Z.H.
Deposit date:2015-01-09
Release date:2015-12-09
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Atomic model of a nonenveloped virus reveals pH sensors for a coordinated process of cell entry.
Nat.Struct.Mol.Biol., 23, 2016
3JB3
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Atomic model of cytoplasmic polyhedrosis virus with SAM, GTP and ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Capsid protein VP1, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Yu, X.K, Jiang, J.S, Sun, J.C, Zhou, Z.H.
Deposit date:2015-07-06
Release date:2015-08-12
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:A putative ATPase mediates RNA transcription and capping in a dsRNA virus.
Elife, 4, 2015
5X07
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BU of 5x07 by Molmil
Crystal structure of FOXA2 DNA binding domain bound to a full consensus DNA site
Descriptor: DNA (5'-D(*CP*AP*AP*AP*AP*TP*GP*TP*AP*AP*AP*CP*AP*AP*GP*A)-3'), DNA (5'-D(*TP*CP*TP*TP*GP*TP*TP*TP*AP*CP*AP*TP*TP*TP*TP*G)-3'), Hepatocyte nuclear factor 3-beta
Authors:Li, J, Guo, M, Zhou, Z, Jiang, L, Chen, X, Qu, L, Wu, D, Chen, Z, Chen, L, Chen, Y.
Deposit date:2017-01-20
Release date:2017-08-16
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (2.796 Å)
Cite:Structure of the Forkhead Domain of FOXA2 Bound to a Complete DNA Consensus Site
Biochemistry, 56, 2017
3J2P
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CryoEM structure of Dengue virus envelope protein heterotetramer
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope protein E, ...
Authors:Zhang, X, Ge, P, Yu, X, Brannan, J.M, Bi, G, Zhang, Q, Schein, S, Zhou, Z.H.
Deposit date:2012-11-30
Release date:2012-12-19
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM structure of the mature dengue virus at 3.5-A resolution.
Nat.Struct.Mol.Biol., 20, 2012
6B1T
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BU of 6b1t by Molmil
Improved cryoEM structure of human adenovirus type 5 with atomic details of minor proteins VI and VII
Descriptor: Hexon protein, Hexon-interlacing protein, Penton protein, ...
Authors:Dai, X.H, Wu, L, Sun, R, Zhou, Z.H.
Deposit date:2017-09-18
Release date:2017-09-27
Last modified:2019-11-27
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Atomic Structures of Minor Proteins VI and VII in Human Adenovirus.
J. Virol., 91, 2017
6B5V
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BU of 6b5v by Molmil
Structure of TRPV5 in complex with econazole
Descriptor: 1-[(2R)-2-[(4-chlorobenzyl)oxy]-2-(2,4-dichlorophenyl)ethyl]-1H-imidazole, CALCIUM ION, Transient receptor potential cation channel subfamily V member 5
Authors:Hughes, T.E.T, Lodowski, D.T, Huynh, K.W, Yazici, A, del Rosario, J, Kapoor, A, Basak, S, Samanta, A, Chakrapani, S, Zhou, Z.H, Filizola, M, Rohacs, T, Han, S, Moiseenkova-Bell, V.Y.
Deposit date:2017-09-29
Release date:2017-12-27
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Structural basis of TRPV5 channel inhibition by econazole revealed by cryo-EM.
Nat. Struct. Mol. Biol., 25, 2018
6CU7
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BU of 6cu7 by Molmil
Alpha Synuclein fibril formed by full length protein - Rod Polymorph
Descriptor: Alpha-synuclein
Authors:Li, B, Hatami, A, Ge, P, Murray, K.A, Sheth, P, Zhang, M, Nair, G, Sawaya, M.R, Zhu, C, Broad, M, Shin, W.S, Ye, S, John, V, Eisenberg, D.S, Zhou, Z.H, Jiang, L.
Deposit date:2018-03-23
Release date:2018-09-12
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Cryo-EM of full-length alpha-synuclein reveals fibril polymorphs with a common structural kernel.
Nat Commun, 9, 2018
5HI9
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BU of 5hi9 by Molmil
Structure of the full-length TRPV2 channel by cryo-electron microscopy
Descriptor: Transient Receptor Potential Cation Channel Subfamily V Member 2
Authors:Huynh, K.W, Cohen, M.R, Jiansen, J, Samanta, A, Lodowski, D.T, Zhou, Z.H, Moiseenkova-Bell, V.Y.
Deposit date:2016-01-11
Release date:2016-03-30
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Structure of the full-length TRPV2 channel by cryo-EM.
Nat Commun, 7, 2016
6CIJ
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BU of 6cij by Molmil
Cryo-EM structure of mouse RAG1/2 HFC complex containing partial HMGB1 linker(3.9 A)
Descriptor: CALCIUM ION, DNA (30-MER), DNA (41-MER), ...
Authors:Chen, X, Kim, M, Chuenchor, W, Cui, Y, Zhang, X, Zhou, Z.H, Gellert, M, Yang, W.
Deposit date:2018-02-24
Release date:2018-04-25
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cracking the DNA Code for V(D)J Recombination.
Mol. Cell, 70, 2018
6CG0
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BU of 6cg0 by Molmil
Cryo-EM structure of mouse RAG1/2 HFC complex (3.17 A)
Descriptor: CALCIUM ION, DNA (30-MER), DNA (41-MER), ...
Authors:Chen, X, Kim, M, Chuenchor, W, Cui, Y, Zhang, X, Zhou, Z.H, Gellert, M, Yang, W.
Deposit date:2018-02-19
Release date:2018-04-25
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.17 Å)
Cite:Cracking the DNA Code for V(D)J Recombination.
Mol. Cell, 70, 2018
6CAA
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BU of 6caa by Molmil
CryoEM structure of human SLC4A4 sodium-coupled acid-base transporter NBCe1
Descriptor: Electrogenic sodium bicarbonate cotransporter 1
Authors:Huynh, K.W, Jiang, J, Abuladze, N, Tsirulnikov, K, Kao, L, Shao, X, Newman, D, Azimov, R, Pushkin, A, Zhou, Z.H, Kurtz, I.
Deposit date:2018-01-29
Release date:2018-03-07
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:CryoEM structure of the human SLC4A4 sodium-coupled acid-base transporter NBCe1.
Nat Commun, 9, 2018
6D6V
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BU of 6d6v by Molmil
CryoEM structure of Tetrahymena telomerase with telomeric DNA at 4.8 Angstrom resolution
Descriptor: DNA (5'-D(P*GP*TP*TP*GP*GP*GP*GP*TP*TP*GP*GP*GP*GP*TP*TP*GP*GP*GP*G)-3'), RNA (159-MER), Telomerase associated protein p65, ...
Authors:Jiang, J, Wang, Y, Susac, L, Chan, H, Basu, R, Zhou, Z.H, Feigon, J.
Deposit date:2018-04-22
Release date:2018-05-30
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Structure of Telomerase with Telomeric DNA.
Cell, 173, 2018
5TFY
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BU of 5tfy by Molmil
The archaeal flagellum of Methanospirillum hungatei strain JF1.
Descriptor: Flagellin
Authors:Poweleit, N, Peng, G, Gunsalus, R.P, Zhou, Z.H.
Deposit date:2016-09-27
Release date:2016-12-07
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:CryoEM structure of the Methanospirillum hungatei archaellum reveals structural features distinct from the bacterial flagellum and type IV pili.
Nat Microbiol, 2, 2016
6M99
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BU of 6m99 by Molmil
In situ structure of transcriptional enzyme complex and asymmetric inner capsid protein of aquareovirus at primed state
Descriptor: PHOSPHATE ION, Putative core protein NTPase/VP5, VP2, ...
Authors:Ding, K, Zhou, Z.H.
Deposit date:2018-08-23
Release date:2018-09-05
Last modified:2019-11-27
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:In SituStructures of the Polymerase Complex and RNA Genome Show How Aquareovirus Transcription Machineries Respond to Uncoating.
J. Virol., 92, 2018
6N7P
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BU of 6n7p by Molmil
S. cerevisiae spliceosomal E complex (UBC4)
Descriptor: 56 kDa U1 small nuclear ribonucleoprotein component, Nuclear cap-binding protein complex subunit 1, Nuclear cap-binding protein subunit 2, ...
Authors:Liu, S, Li, X, Zhou, Z.H, Zhao, R.
Deposit date:2018-11-27
Release date:2019-09-18
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:A unified mechanism for intron and exon definition and back-splicing.
Nature, 573, 2019
6N7X
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S. cerevisiae U1 snRNP
Descriptor: 56 kDa U1 small nuclear ribonucleoprotein component, Pre-mRNA-processing factor 39, Protein NAM8, ...
Authors:Li, X, Liu, S, Jiang, J, Zhang, L, Espinosa, S, Hill, R.C, Hansen, K.C, Zhou, Z.H, Zhao, R.
Deposit date:2018-11-28
Release date:2019-07-24
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:CryoEM structure of Saccharomyces cerevisiae U1 snRNP offers insight into alternative splicing.
Nat Commun, 8, 2017
6N9Y
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Atomic structure of Non-Structural protein 1 of bluetongue virus
Descriptor: Non-structural protein 1
Authors:Kerviel, A, Ge, P, Lai, M, Jih, J, Boyce, M, Zhang, X, Zhou, Z.H, Roy, P.
Deposit date:2018-12-04
Release date:2019-03-13
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Atomic structure of the translation regulatory protein NS1 of bluetongue virus.
Nat Microbiol, 4, 2019

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