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PDB: 338 results

6CT0
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Atomic Structure of the E2 Inner Core of Human Pyruvate Dehydrogenase Complex
Descriptor: Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial
Authors:Jiang, J, Baiesc, F.L, Hiromasa, Y, Yu, X, Hui, W.H, Dai, X, Roche, T.E, Zhou, Z.H.
Deposit date:2018-03-21
Release date:2018-04-18
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Atomic Structure of the E2 Inner Core of Human Pyruvate Dehydrogenase Complex.
Biochemistry, 57, 2018
6CU8
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BU of 6cu8 by Molmil
Alpha Synuclein fibril formed by full length protein - Twister Polymorph
Descriptor: Alpha-synuclein
Authors:Li, B, Hatami, A, Ge, P, Murray, K.A, Sheth, P, Zhang, M, Nair, G, Sawaya, M.R, Zhu, C, Broad, M, Shin, W.S, Ye, S, John, V, Eisenberg, D.S, Zhou, Z.H, Jiang, L.
Deposit date:2018-03-23
Release date:2018-09-12
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM of full-length alpha-synuclein reveals fibril polymorphs with a common structural kernel.
Nat Commun, 9, 2018
6OEO
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Cryo-EM structure of mouse RAG1/2 NFC complex (DNA1)
Descriptor: CALCIUM ION, DNA (46-MER), DNA (57-MER), ...
Authors:Chen, X, Cui, Y, Zhou, Z.H, Yang, W, Gellert, M.
Deposit date:2019-03-27
Release date:2020-01-29
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.69 Å)
Cite:Cutting antiparallel DNA strands in a single active site.
Nat.Struct.Mol.Biol., 27, 2020
6OEQ
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Cryo-EM structure of mouse RAG1/2 12RSS-PRC/23RSS-NFC complex (DNA1)
Descriptor: CALCIUM ION, DNA (46-MER), DNA (57-MER), ...
Authors:Chen, X, Cui, Y, Zhou, Z.H, Yang, W, Gellert, M.
Deposit date:2019-03-27
Release date:2020-01-29
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Cutting antiparallel DNA strands in a single active site.
Nat.Struct.Mol.Biol., 27, 2020
8UD2
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BU of 8ud2 by Molmil
SARS-CoV-2 Nsp15, apo-form
Descriptor: Non-structural protein 15
Authors:Ito, F, Yang, H, Zhou, Z.H, Chen, X.S.
Deposit date:2023-09-28
Release date:2024-04-24
Method:ELECTRON MICROSCOPY (2.33 Å)
Cite:Structural basis for polyuridine tract recognition by SARS-CoV-2 Nsp15.
Protein Cell, 2024
8UD3
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SARS-CoV-2 Nsp15 bound to poly(A/U) RNA, consensus form
Descriptor: Non-structural protein 15, RNA (35-MER)
Authors:Ito, F, Yang, H, Zhou, Z.H, Chen, X.S.
Deposit date:2023-09-28
Release date:2024-04-24
Method:ELECTRON MICROSCOPY (2.67 Å)
Cite:Structural basis for polyuridine tract recognition by SARS-CoV-2 Nsp15.
Protein Cell, 2024
8UD4
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SARS-CoV-2 Nsp15 bound to poly(A/U) RNA, state 1
Descriptor: Non-structural protein 15, RNA (35-MER)
Authors:Ito, F, Yang, H, Zhou, Z.H, Chen, X.S.
Deposit date:2023-09-28
Release date:2024-04-24
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:Structural basis for polyuridine tract recognition by SARS-CoV-2 Nsp15.
Protein Cell, 2024
8UD5
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BU of 8ud5 by Molmil
SARS-CoV-2 Nsp15 bound to poly(A/U) RNA, state 2
Descriptor: Non-structural protein 15, RNA (35-MER)
Authors:Ito, F, Yang, H, Zhou, Z.H, Chen, X.S.
Deposit date:2023-09-28
Release date:2024-04-24
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:Structural basis for polyuridine tract recognition by SARS-CoV-2 Nsp15.
Protein Cell, 2024
3CNF
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BU of 3cnf by Molmil
3.88 Angstrom structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy
Descriptor: VP1, VP3
Authors:Yu, X, Jin, L, Zhou, Z.H.
Deposit date:2008-03-25
Release date:2008-04-29
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.88 Å)
Cite:3.88 A structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy.
Nature, 453, 2008
4RE1
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BU of 4re1 by Molmil
Crystal structure of human TEAD1 and disulfide-engineered YAP
Descriptor: CHLORIDE ION, Transcriptional enhancer factor TEF-1, Yorkie homolog
Authors:Xu, Z, Zhou, Z.
Deposit date:2014-09-21
Release date:2014-11-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Targeting Hippo pathway by specific interruption of YAP-TEAD interaction using cyclic YAP-like peptides.
Faseb J., 29, 2015
8WLJ
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BU of 8wlj by Molmil
Cryo-EM structure of human apo VMAT2 with nanobody in an outward-facing conformation
Descriptor: Synaptic vesicular amine transporter, nanobody
Authors:Qu, Q, Wang, Y, Zhou, Z.
Deposit date:2023-09-30
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM structure of human apo VMAT2 in an outward-facing conformation
To Be Published
8WLK
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Cryo-EM structure of human VMAT2 in presence of Tetrabenazine, determined in an outward-facing conformation
Descriptor: (3S,5R,11bS)-9,10-dimethoxy-3-(2-methylpropyl)-1,3,4,6,7,11b-hexahydro-2H-pyrido[2,1-a]isoquinolin-2-one, Synaptic vesicular amine transporter
Authors:Qu, Q, Wang, Y, Zhou, Z.
Deposit date:2023-09-30
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (3.37 Å)
Cite:Cryo-EM structure of human apo VMAT2 in an outward-facing conformation
To Be Published
8WLL
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BU of 8wll by Molmil
Cryo-EM structure of human VMAT2 Y422C, in the presence of reserpine, determined in an inward-facing conformation
Descriptor: Synaptic vesicular amine transporter, reserpine
Authors:Qu, Q, Wang, Y, Zhou, Z.
Deposit date:2023-09-30
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (3.74 Å)
Cite:Cryo-EM structure of human VMAT2 Y422C, in the presence of reserpine, determined in an inward-facing conformation
To Be Published
8WLM
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BU of 8wlm by Molmil
Cryo-EM structure of human VMAT2 in presence of 5-HT, determined in an outward-facing conformation
Descriptor: SEROTONIN, Synaptic vesicular amine transporter
Authors:Qu, Q, Wang, Y, Zhou, Z.
Deposit date:2023-09-30
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (3.57 Å)
Cite:Cryo-EM structure of human VMAT2 in presence of 5-HT in an outward-facing conformation
To Be Published
8YF0
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BU of 8yf0 by Molmil
Cryo-EM structure of human SV2A
Descriptor: Synaptic vesicle glycoprotein 2A
Authors:Qu, Q, Liu, S, Zhou, Z.
Deposit date:2024-02-23
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (3.49 Å)
Cite:Cryo-EM structure of human SV2A
To Be Published
8YF1
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Cryo-EM structure of human SV2A in complex with Brivaracetam
Descriptor: (2S)-2-[(4R)-2-oxidanylidene-4-propyl-pyrrolidin-1-yl]butanamide, Synaptic vesicle glycoprotein 2A
Authors:Qu, Q, Liu, S, Zhou, Z.
Deposit date:2024-02-23
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (3.38 Å)
Cite:Cryo-EM structure of human SV2A in complex with Brivaracetam
To Be Published
5TC1
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BU of 5tc1 by Molmil
In situ structures of the genome and genome-delivery apparatus in ssRNA bacteriophage MS2
Descriptor: Capsid protein, Maturation protein, phage MS2 genome
Authors:Dai, X.H, Li, Z.H, Lai, M, Shu, S, Du, Y.S, Zhou, Z.H, Sun, R.
Deposit date:2016-09-13
Release date:2016-12-07
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:In situ structures of the genome and genome-delivery apparatus in a single-stranded RNA virus.
Nature, 541, 2017
8FVI
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BU of 8fvi by Molmil
Human APOBEC3H bound to HIV-1 Vif in complex with CBF-beta, ELOB, ELOC, and CUL5
Descriptor: Core-binding factor subunit beta, Cullin 5, DNA dC->dU-editing enzyme APOBEC-3H, ...
Authors:Ito, F, Alvarez-Cabrera, A.L, Zhou, Z.H, Chen, X.S.
Deposit date:2023-01-19
Release date:2023-09-06
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.24 Å)
Cite:Structural basis of HIV-1 Vif-mediated E3 ligase targeting of host APOBEC3H.
Nat Commun, 14, 2023
3IYK
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BU of 3iyk by Molmil
Bluetongue virus structure reveals a sialic acid binding domain, amphipathic helices and a central coiled coil in the outer capsid proteins
Descriptor: 2-O-methyl-5-N-acetyl-alpha-D-neuraminic acid, VP2, VP5
Authors:Zhang, X, Boyce, M, Bhattacharya, B, Zhang, X, Schein, S, Roy, P, Zhou, Z.H.
Deposit date:2010-01-25
Release date:2010-04-07
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (7 Å)
Cite:Bluetongue virus coat protein VP2 contains sialic acid-binding domains, and VP5 resembles enveloped virus fusion proteins.
Proc.Natl.Acad.Sci.USA, 107, 2010
8E40
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BU of 8e40 by Molmil
Full-length APOBEC3G in complex with HIV-1 Vif, CBF-beta, and fork RNA
Descriptor: Core-binding factor subunit beta, DNA dC->dU-editing enzyme APOBEC-3G, RNA, ...
Authors:Ito, F, Alvarez-Cabrera, A.L, Liu, S, Yang, H, Shiriaeva, A, Zhou, Z.H, Chen, X.S.
Deposit date:2022-08-17
Release date:2023-01-11
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.57 Å)
Cite:Structural basis for HIV-1 antagonism of host APOBEC3G via Cullin E3 ligase.
Sci Adv, 9, 2023
2O0F
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BU of 2o0f by Molmil
Docking of the modified RF3 X-ray structure into cryo-EM map of E.coli 70S ribosome bound with RF3
Descriptor: Peptide chain release factor 3
Authors:Gao, H, Zhou, Z, Rawat, U, Huang, C, Bouakaz, L, Wang, C, Liu, Y, Zavialov, A, Gursky, R, Sanyal, S, Ehrenberg, M, Frank, J, Song, H.
Deposit date:2006-11-27
Release date:2007-07-24
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (15.5 Å)
Cite:RF3 induces ribosomal conformational changes responsible for dissociation of class I release factors
Cell(Cambridge,Mass.), 129, 2007
3J9O
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BU of 3j9o by Molmil
CryoEM structure of a type VI secretion system
Descriptor: Intracellular growth locus protein A, Intracellular growth locus protein B
Authors:Clemens, D.L, Ge, P, Lee, B.-Y, Horwitz, M.A, Zhou, Z.H.
Deposit date:2015-02-11
Release date:2015-03-18
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Atomic Structure of T6SS Reveals Interlaced Array Essential to Function.
Cell(Cambridge,Mass.), 160, 2015
3JB0
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Atomic model of cytoplasmic polyhedrosis virus with GTP
Descriptor: Capsid protein VP1, GUANOSINE-5'-TRIPHOSPHATE, Structural protein VP3, ...
Authors:Yu, X.K, Jiang, J.S, Sun, J.C, Zhou, Z.H.
Deposit date:2015-07-06
Release date:2015-08-12
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:A putative ATPase mediates RNA transcription and capping in a dsRNA virus.
Elife, 4, 2015
3J4U
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BU of 3j4u by Molmil
A new topology of the HK97-like fold revealed in Bordetella bacteriophage: non-covalent chainmail secured by jellyrolls
Descriptor: cementing protein, major capsid protein
Authors:Zhang, X, Guo, H, Jin, L, Czornyj, E, Hodes, A, Hui, W.H, Nieh, A.W, Miller, J.F, Zhou, Z.H.
Deposit date:2013-10-09
Release date:2013-12-25
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:A new topology of the HK97-like fold revealed in Bordetella bacteriophage by cryoEM at 3.5 A resolution.
Elife, 2, 2013
3JAZ
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Atomic model of cytoplasmic polyhedrosis virus with ATP
Descriptor: Capsid protein VP1, Structural protein VP3, Viral structural protein 5
Authors:Yu, X.K, Jiang, J.S, Sun, J.C, Zhou, Z.H.
Deposit date:2015-07-06
Release date:2015-08-12
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:A putative ATPase mediates RNA transcription and capping in a dsRNA virus.
Elife, 4, 2015

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