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PDB: 42 results

1U6T
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Crystal structure of the human SH3 binding glutamic-rich protein like
Descriptor: CITRIC ACID, SH3 domain-binding glutamic acid-rich-like protein
Authors:Yin, L, Xiang, Y, Yang, N, Zhu, D.-Y, Huang, R.-H, Wang, D.-C.
Deposit date:2004-08-01
Release date:2005-08-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of human SH3BGRL protein: the first structure of the human SH3BGR family representing a novel class of thioredoxin fold proteins
Proteins, 61, 2005
5XN7
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BU of 5xn7 by Molmil
Crystal structure of the effector domain RID of Vibrio vulnificus MARTX toxin
Descriptor: 1,4-DIETHYLENE DIOXIDE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, ...
Authors:Yin, L, Zhu, Y.
Deposit date:2017-05-18
Release date:2017-09-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of a MARTX toxin effector domain
To Be Published
7XGB
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BU of 7xgb by Molmil
Crystal structure of the ctcP from Streptomyces aureofaciens
Descriptor: Tetracycline 7-halogenase
Authors:Yin, L.
Deposit date:2022-04-04
Release date:2022-07-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure determination of the halogenase CtcP from Streptomyces aureofaciens.
Acta Crystallogr.,Sect.F, 78, 2022
7MC6
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BU of 7mc6 by Molmil
Crystal structure of the SARS-CoV-2 ExoN-nsp10 complex containing Mg2+ ion
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Moeller, N.M, Shi, K, Banerjee, S, Yin, L, Aihara, H.
Deposit date:2021-04-01
Release date:2021-05-05
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure and dynamics of SARS-CoV-2 proofreading exoribonuclease ExoN.
Proc.Natl.Acad.Sci.USA, 119, 2022
7MC5
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Crystal structure of the SARS-CoV-2 ExoN-nsp10 complex
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, L(+)-TARTARIC ACID, ...
Authors:Moeller, N.M, Shi, K, Banerjee, S, Yin, L, Aihara, H.
Deposit date:2021-04-01
Release date:2021-05-05
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Structure and dynamics of SARS-CoV-2 proofreading exoribonuclease ExoN.
Proc.Natl.Acad.Sci.USA, 119, 2022
6L9K
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H2-Ld a1a2 complexed with A5 peptide
Descriptor: H2-Ld a1a2, SER-PRO-SER-TYR-ALA-TYR-HIS-GLN-PHE
Authors:Wei, P.C, Yin, L.
Deposit date:2019-11-10
Release date:2020-11-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures suggest an approach for converting weak self-peptide tumor antigens into superagonists for CD8 T cells in cancer.
Proc.Natl.Acad.Sci.USA, 118, 2021
6L9O
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BU of 6l9o by Molmil
Crystal structure of FABP7 apo
Descriptor: Fatty acid-binding protein, brain
Authors:Wei, P.C, Yin, L.
Deposit date:2019-11-10
Release date:2020-11-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Crystal structure of FABP7 apo
To Be Published
6LGK
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Crystal structure of an oxido-reductase with mutation
Descriptor: Glyceraldehyde-3-phosphate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, PHOSPHATE ION
Authors:Yang, Y, Lei, J, Yin, L.
Deposit date:2019-12-05
Release date:2020-12-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of an oxido-reductase with mutation
To Be Published
6L9N
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H2-Ld complexed with A5 peptide
Descriptor: MHC, SER-PRO-SER-TYR-ALA-TYR-HIS-GLN-PHE, b2m
Authors:Wei, P.C, Yin, L.
Deposit date:2019-11-10
Release date:2020-11-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structures suggest an approach for converting weak self-peptide tumor antigens into superagonists for CD8 T cells in cancer.
Proc.Natl.Acad.Sci.USA, 118, 2021
6LGJ
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BU of 6lgj by Molmil
Crystal structure of an oxido-reductase
Descriptor: Glyceraldehyde-3-phosphate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Yang, Y, Lei, J, Yin, L.
Deposit date:2019-12-05
Release date:2020-12-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of an oxido-reductase
To be published
6L9L
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1D4 TCR recognition of H2-Ld a1a2 A5 Peptide Complexes
Descriptor: H2-Ld a1a2, SER-PRO-SER-TYR-ALA-TYR-HIS-GLN-PHE, T Cell Receptor
Authors:Wei, P.C, Yin, L.
Deposit date:2019-11-10
Release date:2020-11-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.399 Å)
Cite:Structures suggest an approach for converting weak self-peptide tumor antigens into superagonists for CD8 T cells in cancer.
Proc.Natl.Acad.Sci.USA, 118, 2021
6LG3
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Crystal structure of a bacterial toxin from Mycobacterium tuberculosis
Descriptor: PhiRv1 phage protein
Authors:Zhou, J, Jiang, Y, Luo, Z, Yin, L.
Deposit date:2019-12-04
Release date:2020-11-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.90057254 Å)
Cite:Mycobacterial EST12 activates a RACK1-NLRP3-gasdermin D pyroptosis-IL-1 beta immune pathway.
Sci Adv, 6, 2020
6L9M
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H2-Ld complexed with AH1 peptide
Descriptor: H2-Ld, SER-PRO-SER-TYR-VAL-TYR-HIS-GLN-PHE, b2m
Authors:Wei, P.C, Yin, L.
Deposit date:2019-11-10
Release date:2020-11-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structures suggest an approach for converting weak self-peptide tumor antigens into superagonists for CD8 T cells in cancer.
Proc.Natl.Acad.Sci.USA, 118, 2021
6LGM
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Crystal structure of an oxido-reductase with mutation and inhibitor
Descriptor: Dimethyl fumarate, Glyceraldehyde-3-phosphate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Yang, Y, Lei, J, Yin, L.
Deposit date:2019-12-05
Release date:2020-12-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of an oxido-reductase with mutation and inhibitor
To Be Published
6QNS
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Crystal structure of the binding domain of Botulinum Neurotoxin type B mutant I1248W/V1249W in complex with human synaptotagmin 1 and GD1a receptors
Descriptor: Botulinum neurotoxin type B, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-[N-acetyl-alpha-neuraminic acid-(2-3)]beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, Synaptotagmin-1
Authors:Masuyer, G, Yin, L, Zhang, S, Miyashita, S.I, Dong, M, Stenmark, P.
Deposit date:2019-02-12
Release date:2020-02-26
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Characterization of a membrane binding loop leads to engineering botulinum neurotoxin B with improved therapeutic efficacy.
Plos Biol., 18, 2020
3NI2
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BU of 3ni2 by Molmil
Crystal structures and enzymatic mechanisms of a Populus tomentosa 4-coumarate:CoA ligase
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 4-coumarate:CoA ligase, 5'-O-{(S)-hydroxy[3-(4-hydroxyphenyl)propoxy]phosphoryl}adenosine
Authors:Hu, Y, Yin, L, Gai, Y, Wang, X.X, Wang, D.C.
Deposit date:2010-06-14
Release date:2010-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of a Populus tomentosa 4-coumarate:CoA ligase shed light on its enzymatic mechanisms
Plant Cell, 22, 2010
4H1L
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BU of 4h1l by Molmil
TCR interaction with peptide mimics of nickel offers structural insights in nickel contact allergy
Descriptor: Ani2.3 TCR A chain, Ani2.3 TCR B chain, HLA class II histocompatibility antigen, ...
Authors:Kappler, J.W, Yin, L, Dai, S, Marrack, P.
Deposit date:2012-09-10
Release date:2012-11-14
Last modified:2013-09-04
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:T-cell receptor (TCR) interaction with peptides that mimic nickel offers insight into nickel contact allergy.
Proc.Natl.Acad.Sci.USA, 109, 2012
4H26
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BU of 4h26 by Molmil
TCR interaction with peptide mimics of nickel offers structure insight to nickel contact allergy
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HLA class II histocompatibility antigen, DR alpha chain, ...
Authors:Kappler, J.W, Yin, L, Dai, S, Marrack, P, Crawford, F.
Deposit date:2012-09-12
Release date:2013-10-16
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:T-cell receptor (TCR) interaction with peptides that mimic nickel offers insight into nickel contact allergy.
Proc.Natl.Acad.Sci.USA, 109, 2012
4HEH
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BU of 4heh by Molmil
Crystal structure of AppA SCHIC domain from Rb. sphaeroides
Descriptor: AppA protein
Authors:Dragnea, V, Yin, L, Dann III, C.E, Bauer, C.E.
Deposit date:2012-10-03
Release date:2013-09-18
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Redox and light control the heme-sensing activity of AppA.
MBio, 4, 2013
4H25
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BU of 4h25 by Molmil
TCR interaction with peptide mimics of nickel offers structure insights to nickel contact allergy
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HLA class II histocompatibility antigen, DR alpha chain, ...
Authors:Kappler, J.W, Yin, L, Dai, S, Marrack, P, Crawford, F.
Deposit date:2012-09-12
Release date:2013-10-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:T-cell receptor (TCR) interaction with peptides that mimic nickel offers insight into nickel contact allergy.
Proc.Natl.Acad.Sci.USA, 109, 2012
5YLF
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BU of 5ylf by Molmil
MCR-1 complex with D-glucose
Descriptor: Probable phosphatidylethanolamine transferase Mcr-1, ZINC ION, beta-D-glucopyranose
Authors:Wei, P.C, Song, G.J, Shi, M.Y, Zhou, Y.F, Liu, Y, Lei, J, Chen, P, Yin, L.
Deposit date:2017-10-17
Release date:2017-11-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Substrate analog interaction with MCR-1 offers insight into the rising threat of the plasmid-mediated transferable colistin resistance.
FASEB J., 32, 2018
5YLC
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BU of 5ylc by Molmil
Crystal Structure of MCR-1 Catalytic Domain
Descriptor: Probable phosphatidylethanolamine transferase Mcr-1, ZINC ION
Authors:Wei, P.C, Song, G.J, Shi, M.Y, Zhou, Y.F, Liu, Y, Lei, J, Chen, P, Yin, L.
Deposit date:2017-10-17
Release date:2017-11-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Substrate analog interaction with MCR-1 offers insight into the rising threat of the plasmid-mediated transferable colistin resistance.
FASEB J., 32, 2018
5YLE
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BU of 5yle by Molmil
MCR-1 complex with ethanolamine (ETA)
Descriptor: ETHANOLAMINE, Probable phosphatidylethanolamine transferase Mcr-1, ZINC ION
Authors:Wei, P.C, Song, G.J, Shi, M.Y, Zhou, Y.F, Liu, Y, Lei, J, Chen, P, Yin, L.
Deposit date:2017-10-17
Release date:2017-11-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Substrate analog interaction with MCR-1 offers insight into the rising threat of the plasmid-mediated transferable colistin resistance.
FASEB J., 32, 2018
7K32
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Crystal structure of Endonuclease Q complex with 27-mer duplex substrate with an abasic lesion at the active site
Descriptor: DNA (27-MER), Endonuclease Q, MAGNESIUM ION, ...
Authors:Shi, K, Moeller, N.M, Banerjee, S, Yin, L, Orellana, K, Aihara, H.
Deposit date:2020-09-10
Release date:2021-03-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Structural basis for recognition of distinct deaminated DNA lesions by endonuclease Q.
Proc.Natl.Acad.Sci.USA, 118, 2021
7K33
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BU of 7k33 by Molmil
Crystal structure of Endonuclease Q complex with 27-mer duplex substrate with an abasic lesion at the active site
Descriptor: DNA (27-MER), Endonuclease Q, MAGNESIUM ION, ...
Authors:Shi, K, Moeller, N.M, Banerjee, S, Yin, L, Orellana, K, Aihara, H.
Deposit date:2020-09-10
Release date:2021-03-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Structural basis for recognition of distinct deaminated DNA lesions by endonuclease Q.
Proc.Natl.Acad.Sci.USA, 118, 2021

 

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