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PDB: 29 results

1F8W
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CRYSTAL STRUCTURE OF NADH PEROXIDASE MUTANT: R303M
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NADH PEROXIDASE
Authors:Yeh, J.I, Claiborne, A, Hol, W.G.J.
Deposit date:2000-07-05
Release date:2001-02-05
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Analysis of the kinetic and redox properties of the NADH peroxidase R303M mutant: correlation with the crystal structure.
Biochemistry, 39, 2000
2R4J
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BU of 2r4j by Molmil
Crystal structure of Escherichia coli SeMet substituted Glycerol-3-phosphate Dehydrogenase in complex with DHAP
Descriptor: 1,2-ETHANEDIOL, 1,3-DIHYDROXYACETONEPHOSPHATE, Aerobic glycerol-3-phosphate dehydrogenase, ...
Authors:Yeh, J.I, Du, S, Chinte, U.
Deposit date:2007-08-31
Release date:2008-06-03
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structure of glycerol-3-phosphate dehydrogenase, an essential monotopic membrane enzyme involved in respiration and metabolism.
Proc.Natl.Acad.Sci.Usa, 105, 2008
2R46
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Crystal structure of Escherichia coli Glycerol-3-phosphate Dehydrogenase in complex with 2-phosphopyruvic acid.
Descriptor: 1,2-ETHANEDIOL, Aerobic glycerol-3-phosphate dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Yeh, J.I, Du, S, Chinte, U.
Deposit date:2007-08-30
Release date:2008-04-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of glycerol-3-phosphate dehydrogenase, an essential monotopic membrane enzyme involved in respiration and metabolism
Proc.Natl.Acad.Sci.USA, 105, 2008
2R45
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Crystal structure of Escherichia coli Glycerol-3-phosphate Dehydrogenase in complex with 2-phospho-d-glyceric acid
Descriptor: 1,2-ETHANEDIOL, 2-PHOSPHOGLYCERIC ACID, Aerobic glycerol-3-phosphate dehydrogenase, ...
Authors:Yeh, J.I, Du, S, Chinte, U.
Deposit date:2007-08-30
Release date:2008-04-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of glycerol-3-phosphate dehydrogenase, an essential monotopic membrane enzyme involved in respiration and metabolism
Proc.Natl.Acad.Sci.USA, 105, 2008
2R4E
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Crystal structure of Escherichia coli Glycerol-3-phosphate Dehydrogenase in complex with DHAP
Descriptor: 1,2-ETHANEDIOL, 1,3-DIHYDROXYACETONEPHOSPHATE, Aerobic glycerol-3-phosphate dehydrogenase, ...
Authors:Yeh, J.I, Du, S, Chinte, U.
Deposit date:2007-08-31
Release date:2008-04-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of glycerol-3-phosphate dehydrogenase, an essential monotopic membrane enzyme involved in respiration and metabolism.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3D7E
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Enterococcus casseliflavus glycerol kinase mutant HIS232ALA complexed with glycerol
Descriptor: GLYCEROL, Glycerol kinase
Authors:Yeh, J.I, Vahedi-Faridi, A.
Deposit date:2008-05-21
Release date:2009-04-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Structural characterizations of glycerol kinase: unraveling phosphorylation-induced long-range activation
Biochemistry, 48, 2009
1XUP
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BU of 1xup by Molmil
ENTEROCOCCUS CASSELIFLAVUS GLYCEROL KINASE COMPLEXED WITH GLYCEROL
Descriptor: GLYCEROL, Glycerol kinase
Authors:Yeh, J.I, Charrier, V, Paulo, J, Hou, L, Darbon, E, Hol, W.G.J, Deutscher, J.
Deposit date:2004-10-26
Release date:2004-12-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structures of Enterococcal Glycerol Kinase in the Absence and Presence of Glycerol: Correlation of Conformation to Substrate Binding and a Mechanism of Activation by Phosphorylation
Biochemistry, 43, 2004
1R59
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Enterococcus casseliflavus glycerol kinase
Descriptor: Glycerol kinase
Authors:Yeh, J.I, Charrier, V, Paulo, J, Hou, L, Darbon, E, Claiborne, A, Hol, W.G, Deutscher, J.
Deposit date:2003-10-09
Release date:2004-10-12
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of Enterococcal Glycerol Kinase in the Absence and Presence of Glycerol: Correlation of conformation to substrate binding and a mechanism of activation by phosphorylation
Biochemistry, 43, 2004
4E5Z
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Damaged DNA induced UV-damaged DNA-binding protein (UV-DDB) dimerization and its roles in chromatinized DNA repair
Descriptor: AP24 DNA complementary strand, AP24 DNA strand, DNA damage-binding protein 1, ...
Authors:Yeh, J.I, Du, S.
Deposit date:2012-03-15
Release date:2012-08-22
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.22 Å)
Cite:Damaged DNA induced UV-damaged DNA-binding protein (UV-DDB) dimerization and its roles in chromatinized DNA repair.
Proc.Natl.Acad.Sci.USA, 109, 2012
4E54
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Damaged DNA induced UV-damaged DNA-binding protein (UV-DDB) dimerization and its roles in chromatinized DNA repair
Descriptor: AP24 DNA complementary strand, AP24 DNA strand, DNA damage-binding protein 1, ...
Authors:Yeh, J.I, Du, S.
Deposit date:2012-03-14
Release date:2012-08-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Damaged DNA induced UV-damaged DNA-binding protein (UV-DDB) dimerization and its roles in chromatinized DNA repair.
Proc.Natl.Acad.Sci.USA, 109, 2012
2QCU
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Crystal structure of Glycerol-3-phosphate Dehydrogenase from Escherichia coli
Descriptor: 1,2-ETHANEDIOL, Aerobic glycerol-3-phosphate dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Yeh, J.I, Chinte, U, Du, S.
Deposit date:2007-06-19
Release date:2008-04-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure of glycerol-3-phosphate dehydrogenase, an essential monotopic membrane enzyme involved in respiration and metabolism.
Proc.Natl.Acad.Sci.Usa, 105, 2008
1JOA
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BU of 1joa by Molmil
NADH PEROXIDASE WITH CYSTEINE-SULFENIC ACID
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NADH PEROXIDASE
Authors:Yeh, J.I, Claiborne, A.C, Hol, W.G.J.
Deposit date:1996-07-02
Release date:1997-01-11
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the native cysteine-sulfenic acid redox center of enterococcal NADH peroxidase refined at 2.8 A resolution.
Biochemistry, 35, 1996
1M5W
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1.96 A Crystal Structure of Pyridoxine 5'-Phosphate Synthase in Complex with 1-deoxy-D-xylulose phosphate
Descriptor: 1-DEOXY-D-XYLULOSE-5-PHOSPHATE, PHOSPHATE ION, Pyridoxal phosphate biosynthetic protein pdxJ
Authors:Yeh, J.I, Du, S, Pohl, E, Cane, D.E.
Deposit date:2002-07-10
Release date:2003-07-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Multistate Binding in Pyridoxine 5'-Phosphate Synthase: 1.96 A Crystal Structure in Complex with 1-deoxy-D-xylulose phosphate
Biochemistry, 41, 2002
3H3N
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Glycerol Kinase H232R with Glycerol
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Glycerol kinase, ...
Authors:Yeh, J.I, Kettering, R.D.
Deposit date:2009-04-16
Release date:2009-06-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Structural characterizations of glycerol kinase: unraveling phosphorylation-induced long-range activation
Biochemistry, 48, 2009
3H46
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Glycerol Kinase H232E with Glycerol
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Glycerol kinase, ...
Authors:Yeh, J.I, Kettering, R.D.
Deposit date:2009-04-17
Release date:2009-06-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural characterizations of glycerol kinase: unraveling phosphorylation-induced long-range activation
Biochemistry, 48, 2009
3H3O
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Glycerol Kinase H232R with Ethylene Glycol
Descriptor: 1,2-ETHANEDIOL, Glycerol kinase, PHOSPHATE ION
Authors:Yeh, J.I, Kettering, R.D.
Deposit date:2009-04-16
Release date:2009-06-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural characterizations of glycerol kinase: unraveling phosphorylation-induced long-range activation
Biochemistry, 48, 2009
3H45
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Glycerol Kinase H232E with Ethylene Glycol
Descriptor: 1,2-ETHANEDIOL, Glycerol kinase, PHOSPHATE ION
Authors:Yeh, J.I, Kettering, R.D.
Deposit date:2009-04-17
Release date:2009-06-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural characterizations of glycerol kinase: unraveling phosphorylation-induced long-range activation
Biochemistry, 48, 2009
3MBS
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Crystal structure of 8mer PNA
Descriptor: 1,2-ETHANEDIOL, Peptide Nucleic Acid
Authors:Yeh, J.I, Pohl, E, Truan, D, He, W, Sheldrick, G.M, Achim, C.
Deposit date:2010-03-26
Release date:2011-03-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:The crystal structure of non-modified and bipyridine-modified PNA duplexes.
Chemistry, 16, 2010
3MBU
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BU of 3mbu by Molmil
Structure of a bipyridine-modified PNA duplex
Descriptor: 1,2-ETHANEDIOL, Bipyridine-PNA, CARBONATE ION, ...
Authors:Yeh, J.I, Pohl, E, Truan, D, He, W, Sheldrick, G.M, Du, S, Achim, C.
Deposit date:2010-03-26
Release date:2011-03-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:The crystal structure of non-modified and bipyridine-modified PNA duplexes.
Chemistry, 16, 2010
3PA0
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BU of 3pa0 by Molmil
Crystal Structure of Chiral Gamma-PNA with Complementary DNA Strand: Insight Into the Stability and Specificity of Recognition an Conformational Preorganization
Descriptor: 1,2-ETHANEDIOL, DNA 5'-D(*AP*TP*CP*TP*GP*TP*GP*GP*TP*C)-3', PEPTIDE NUCLEIC ACID, ...
Authors:Yeh, J.I, Shivachev, B, Du, S.
Deposit date:2010-10-18
Release date:2010-12-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of chiral gammaPNA with complementary DNA strand: insights into the stability and specificity of recognition and conformational preorganization.
J.Am.Chem.Soc., 132, 2010
4U5W
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Crystal Structure of HIV-1 Nef-SF2 Core Domain in Complex with the Src Family Kinase Hck SH3-SH2 Tandem Regulatory Domains
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, IODIDE ION, Protein Nef, ...
Authors:Alvarado, J.J, Yeh, J.I, Smithgall, T.E.
Deposit date:2014-07-25
Release date:2014-08-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Interaction with the Src Homology (SH3-SH2) Region of the Src-family Kinase Hck Structures the HIV-1 Nef Dimer for Kinase Activation and Effector Recruitment.
J.Biol.Chem., 289, 2014
1VLS
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BU of 1vls by Molmil
LIGAND BINDING DOMAIN OF THE WILD-TYPE ASPARTATE RECEPTOR
Descriptor: ASPARTATE RECEPTOR
Authors:Kim, S.-H, Yeh, J.I, Biemann, H.-P, Prive, G, Pandit, J, Koshland Junior, D.E.
Deposit date:1996-09-17
Release date:1997-04-21
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:High-resolution structures of the ligand binding domain of the wild-type bacterial aspartate receptor.
J.Mol.Biol., 262, 1996
1VLT
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BU of 1vlt by Molmil
LIGAND BINDING DOMAIN OF THE WILD-TYPE ASPARTATE RECEPTOR WITH ASPARTATE
Descriptor: ASPARTATE RECEPTOR, ASPARTIC ACID
Authors:Kim, S.-H, Yeh, J.I, Biemann, H.-P, Prive, G, Pandit, J, Koshland Junior, D.E.
Deposit date:1996-09-17
Release date:1997-05-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:High-resolution structures of the ligand binding domain of the wild-type bacterial aspartate receptor.
J.Mol.Biol., 262, 1996
2LIG
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BU of 2lig by Molmil
THREE-DIMENSIONAL STRUCTURES OF THE LIGAND-BINDING DOMAIN OF THE BACTERIAL ASPARTATE RECEPTOR WITH AND WITHOUT A LIGAND
Descriptor: 1,10-PHENANTHROLINE, ASPARTATE RECEPTOR, ASPARTIC ACID, ...
Authors:Kim, S.-H, Yeh, J.I, Prive, G.G, Milburn, M, Scott, W, Koshland Junior, D.E.
Deposit date:1995-04-18
Release date:1995-09-15
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Three-dimensional structures of the ligand-binding domain of the bacterial aspartate receptor with and without a ligand.
Science, 254, 1991
1LIH
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BU of 1lih by Molmil
THREE-DIMENSIONAL STRUCTURES OF THE LIGAND-BINDING DOMAIN OF THE BACTERIAL ASPARTATE RECEPTOR WITH AND WITHOUT A LIGAND
Descriptor: 1,10-PHENANTHROLINE, ASPARTATE RECEPTOR
Authors:Kim, S.-H, Scott, W, Yeh, J.I, Prive, G.G, Milburn, M.
Deposit date:1995-04-18
Release date:1995-09-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Three-dimensional structures of the ligand-binding domain of the bacterial aspartate receptor with and without a ligand.
Science, 254, 1991

 

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