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PDB: 461 results

2LR7
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BU of 2lr7 by Molmil
Cathelicidin-PY
Descriptor: Cathelicidin-PY
Authors:Yang, J.
Deposit date:2012-03-27
Release date:2013-03-27
Method:SOLUTION NMR
Cite:Structure of Cathelicidin-PY
To be Published
6M6P
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BU of 6m6p by Molmil
Structure of Marine bacterial laminarinase mutant E135A in complex with 1,3-beta-cellotriosyl-glucose
Descriptor: CALCIUM ION, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-alpha-D-glucopyranose, laminarinase
Authors:Yang, J, Xu, Y, Tanokura, M, Long, L, Miyakawa, T.
Deposit date:2020-03-16
Release date:2020-09-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Molecular Basis for Substrate Recognition and Catalysis by a Marine Bacterial Laminarinase.
Appl.Environ.Microbiol., 86, 2020
6NRY
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BU of 6nry by Molmil
Crystal structure of human caspase-4
Descriptor: Caspase-4, GLYCEROL
Authors:Yang, J, Liu, Z, Shi, W, Xiao, T.S.
Deposit date:2019-01-24
Release date:2020-07-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.184 Å)
Cite:Crystal structure of human caspase-4
To Be Published
7VQM
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BU of 7vqm by Molmil
GH2 beta-galacturonate AqGalA in complex with galacturonide
Descriptor: CHLORIDE ION, GH2 beta-galacturonate AqGalA, beta-D-galactopyranuronic acid
Authors:Yang, J.
Deposit date:2021-10-20
Release date:2021-11-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and Biochemical Basis of a Marine Bacterial Glycoside Hydrolase Family 2 beta-Glycosidase with Broad Substrate Specificity
Appl.Environ.Microbiol., 88, 2022
7VW1
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BU of 7vw1 by Molmil
Structure of a dimeric periplasmic protein bound with cuprous ions
Descriptor: COPPER (I) ION, DUF305 domain-containing protein
Authors:Yang, J, Liu, L.
Deposit date:2021-11-09
Release date:2022-01-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.494 Å)
Cite:Structural basis of copper binding by a dimeric periplasmic protein forming a six-helical bundle.
J.Inorg.Biochem., 229, 2022
7VW0
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BU of 7vw0 by Molmil
Structure of a dimeric periplasmic protein
Descriptor: DUF305 domain-containing protein
Authors:Yang, J, Liu, L.
Deposit date:2021-11-09
Release date:2022-01-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.447 Å)
Cite:Structural basis of copper binding by a dimeric periplasmic protein forming a six-helical bundle.
J.Inorg.Biochem., 229, 2022
7CBZ
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BU of 7cbz by Molmil
Crystal structure of T2R-TTL-A31 complex
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-[5-[4-[2-[4-(2-cyclopropylethanoyl)piperazin-1-yl]ethoxy]phenyl]pyridin-2-yl]-N-(phenylmethyl)ethanamide, CALCIUM ION, ...
Authors:Yang, J.H, Yan, W.
Deposit date:2020-06-15
Release date:2021-06-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Design, Synthesis, and Bioactivity Evaluation of Dual-Target Inhibitors of Tubulin and Src Kinase Guided by Crystal Structure.
J.Med.Chem., 64, 2021
8HPG
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BU of 8hpg by Molmil
Crystal structure of phenylpyruvate reductase from Lactobacillus sp. CGMCC 9967
Descriptor: Phenylpyruvate reductase
Authors:Yang, J.H, Song, W.
Deposit date:2022-12-12
Release date:2023-12-20
Method:X-RAY DIFFRACTION (3.895 Å)
Cite:One-Pot Biocatalytic Transformation of L-DOPA to D-Danshensu
To Be Published
7CUX
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BU of 7cux by Molmil
Crystal structure of human Schlafen 5 N'-terminal domain (SLFN5-N) involved in ssRNA cleaving and DNA binding
Descriptor: Schlafen family member 5, ZINC ION
Authors:Yang, J.Y, Luo, M, Ou, J.Y, Wang, Z.W, Gao, S.
Deposit date:2020-08-25
Release date:2021-08-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.29477072 Å)
Cite:Crystal structure of human Schlafen 5 N'-terminal domain (SLFN5-N) involved in ssRNA cleaving and DNA binding
To Be Published
7D6N
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BU of 7d6n by Molmil
Crystal structure of tick-borne encephalitis virus RNA-dependent RNA polymerase
Descriptor: MAGNESIUM ION, Tick-borne encephalitis virus RNA-dependent RNA polymerase, ZINC ION
Authors:Yang, J, Jing, X, Gong, P.
Deposit date:2020-10-01
Release date:2020-12-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.168 Å)
Cite:Crystal structure of tick-borne encephalitis virus
Nucleic Acids Res., 2020
7E5C
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BU of 7e5c by Molmil
Bacterial prolidase mutant D45W/L225Y/H226L/H343I
Descriptor: MANGANESE (II) ION, Xaa-Pro dipeptidase
Authors:Yang, J.
Deposit date:2021-02-18
Release date:2021-03-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Structure-based redesign of the bacterial prolidase active-site pocket for efficient enhancement of methyl-parathion hydrolysis
Catalysis Science And Technology, 11, 2021
7EMJ
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BU of 7emj by Molmil
Crystal structure of T2R-TTL-Barbigerone complex
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 8,8-dimethyl-3-(2,4,5-trimethoxyphenyl)pyrano[2,3-f]chromen-4-one, CALCIUM ION, ...
Authors:Yang, J.H, Yan, W.
Deposit date:2021-04-14
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Crystal structure of T2R-TTL-barbigerone complex
To Be Published
7CCB
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BU of 7ccb by Molmil
Crystal structure of the SPRY domain-containing protein 7 (SPRY7)
Descriptor: SPRY domain-containing protein 7
Authors:Yang, J, Kuang, Z.
Deposit date:2020-06-16
Release date:2020-10-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Crystal structure of the SPRY domain-containing protein 7 reveals unique structural features.
Biochem.Biophys.Res.Commun., 531, 2020
7D6M
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BU of 7d6m by Molmil
Crystal structure of tick-borne encephalitis virus methyltransferase
Descriptor: S-ADENOSYLMETHIONINE, Tick-borne encephalitis virus methyltransferase
Authors:Yang, J, Jing, X, Gong, P.
Deposit date:2020-10-01
Release date:2020-12-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.894 Å)
Cite:Crystal structure of tick-borne encephalitis virus
Nucleic Acids Res., 2020
7F0Y
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BU of 7f0y by Molmil
Crystal structure of isomerase NsrQ F58A in complex with substrate analogue
Descriptor: NsrQ, methyl 2-[2,6-bis(oxidanyl)phenyl]carbonyl-5-methyl-3-oxidanyl-benzoate
Authors:Yang, J, Mori, T, Abe, I.
Deposit date:2021-06-07
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural Basis for Isomerization Reactions in Fungal Tetrahydroxanthone Biosynthesis and Diversification.
Angew.Chem.Int.Ed.Engl., 60, 2021
7F13
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BU of 7f13 by Molmil
Crystal structure of isomerase Dcr3
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Dcr3
Authors:Yang, J, Mori, T, Abe, I.
Deposit date:2021-06-07
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural Basis for Isomerization Reactions in Fungal Tetrahydroxanthone Biosynthesis and Diversification.
Angew.Chem.Int.Ed.Engl., 60, 2021
7F0Z
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BU of 7f0z by Molmil
Crystal structure of NsrQ W31A
Descriptor: NsrQ
Authors:Yang, J, Mori, T, Abe, I.
Deposit date:2021-06-07
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis for Isomerization Reactions in Fungal Tetrahydroxanthone Biosynthesis and Diversification.
Angew.Chem.Int.Ed.Engl., 60, 2021
7F11
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BU of 7f11 by Molmil
Crystal structure of NsrQ M128I in complex with substrate analogue 7
Descriptor: NsrQ, methyl 2-[2,6-bis(oxidanyl)phenyl]carbonyl-5-methyl-3,6-bis(oxidanyl)benzoate
Authors:Yang, J, Mori, T, Abe, I.
Deposit date:2021-06-07
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural Basis for Isomerization Reactions in Fungal Tetrahydroxanthone Biosynthesis and Diversification.
Angew.Chem.Int.Ed.Engl., 60, 2021
7F0O
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BU of 7f0o by Molmil
Crystal structure of selenomethionine-labeled isomerase NsrQ
Descriptor: NsrQ
Authors:Yang, J, Mori, T, Abe, I.
Deposit date:2021-06-06
Release date:2022-04-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Basis for Isomerization Reactions in Fungal Tetrahydroxanthone Biosynthesis and Diversification.
Angew.Chem.Int.Ed.Engl., 60, 2021
7F10
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BU of 7f10 by Molmil
Crystal structure of NsrQ M128I in complex with substrate analogue 3
Descriptor: NsrQ, methyl 2-[2,6-bis(oxidanyl)phenyl]carbonyl-5-methyl-3-oxidanyl-benzoate
Authors:Yang, J, Mori, T, Abe, I.
Deposit date:2021-06-07
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural Basis for Isomerization Reactions in Fungal Tetrahydroxanthone Biosynthesis and Diversification.
Angew.Chem.Int.Ed.Engl., 60, 2021
7F14
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BU of 7f14 by Molmil
Crystal structure of isomerase Dcr3 complex with substrate analogue 3
Descriptor: Dcr3, methyl 2-[2,6-bis(oxidanyl)phenyl]carbonyl-5-methyl-3-oxidanyl-benzoate
Authors:Yang, J, Mori, T, Abe, I.
Deposit date:2021-06-07
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Basis for Isomerization Reactions in Fungal Tetrahydroxanthone Biosynthesis and Diversification.
Angew.Chem.Int.Ed.Engl., 60, 2021
7ECC
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BU of 7ecc by Molmil
M4 family peptidase PlM4P-mature form
Descriptor: CALCIUM ION, M4 family peptidase, PHOSPHATE ION, ...
Authors:Yang, J.
Deposit date:2021-03-12
Release date:2021-04-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:M4 family peptidase PlM4P-mature form
To Be Published
7FGZ
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BU of 7fgz by Molmil
Marine bacterial GH16 hydrolase
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, GH16 hydrolase
Authors:Yang, J.
Deposit date:2021-07-28
Release date:2022-08-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Marine bacterial GH16 hydrolase
To Be Published
6TL0
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BU of 6tl0 by Molmil
Solution structure and 1H, 13C and 15N chemical shift assignments for the complex of VPS29 with VARP 687-747
Descriptor: Ankyrin repeat domain-containing protein 27, Vacuolar protein sorting-associated protein 29, ZINC ION
Authors:Owen, D.J, Neuhaus, D, Yang, J.-C, Crawley-Snowdon, H.
Deposit date:2019-11-29
Release date:2020-10-21
Method:SOLUTION NMR
Cite:Mechanism and evolution of the Zn-fingernail required for interaction of VARP with VPS29.
Nat Commun, 11, 2020
6TKY
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BU of 6tky by Molmil
Crystal structure of the DHR2 domain of DOCK10 in complex with CDC42
Descriptor: Cell division control protein 42 homolog, Dedicator of cytokinesis protein 10, GLYCEROL
Authors:Barford, D, Fan, D, Cronin, N, Yang, J.
Deposit date:2019-11-29
Release date:2020-01-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural basis for CDC42 and RAC activation by the dual specificity GEF DOCK10
Biorxiv, 2022

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