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PDB: 43 results

1NUL
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BU of 1nul by Molmil
XPRTASE FROM E. COLI
Descriptor: MAGNESIUM ION, SULFATE ION, XANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE
Authors:Vos, S, De Jersey, J, Martin, J.L.
Deposit date:1996-10-15
Release date:1997-05-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Escherichia coli xanthine phosphoribosyltransferase.
Biochemistry, 36, 1997
6TED
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BU of 6ted by Molmil
Structure of complete, activated transcription complex Pol II-DSIF-PAF-SPT6 uncovers allosteric elongation activation by RTF1
Descriptor: DNA (37-MER), DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerase subunit, ...
Authors:Vos, S.M, Farnung, L, Cramer, P.
Deposit date:2019-11-11
Release date:2020-07-22
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structure of complete Pol II-DSIF-PAF-SPT6 transcription complex reveals RTF1 allosteric activation.
Nat.Struct.Mol.Biol., 27, 2020
6GMH
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BU of 6gmh by Molmil
Structure of activated transcription complex Pol II-DSIF-PAF-SPT6
Descriptor: CDC73, CTR9,RNA polymerase-associated protein CTR9 homolog,RNA polymerase-associated protein CTR9 homolog, DNA-directed RNA polymerase II subunit RPB9, ...
Authors:Vos, S.M, Farnung, L, Boehing, M, Linden, A, Wigge, C, Urlaub, H, Cramer, P.
Deposit date:2018-05-26
Release date:2018-08-22
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structure of activated transcription complex Pol II-DSIF-PAF-SPT6.
Nature, 560, 2018
6GML
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BU of 6gml by Molmil
Structure of paused transcription complex Pol II-DSIF-NELF
Descriptor: DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ...
Authors:Vos, S.M, Farnung, L, Urlaub, H, Cramer, P.
Deposit date:2018-05-27
Release date:2018-09-05
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of paused transcription complex Pol II-DSIF-NELF.
Nature, 560, 2018
6GME
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BU of 6gme by Molmil
Structure of H. sapiens SPT6 tandem SH2 domain
Descriptor: SPT6 tandem SH2 domain,Transcription elongation factor SPT6
Authors:Vos, S.M, Farnung, L, Cramer, P.
Deposit date:2018-05-25
Release date:2018-08-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:Structure of activated transcription complex Pol II-DSIF-PAF-SPT6.
Nature, 560, 2018
4TMA
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BU of 4tma by Molmil
Crystal structure of gyrase bound to its inhibitor YacG
Descriptor: DNA gyrase inhibitor YacG, DNA gyrase subunit A, DNA gyrase subunit B, ...
Authors:Vos, S.M, Lyubimov, A.Y, Hershey, D.M, Schoeffler, A.J, Berger, J.M.
Deposit date:2014-05-31
Release date:2014-07-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Direct control of type IIA topoisomerase activity by a chromosomally encoded regulatory protein.
Genes Dev., 28, 2014
4MN4
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BU of 4mn4 by Molmil
Structural Basis for the MukB-topoisomerase IV Interaction
Descriptor: Chromosome partition protein MukB, DNA topoisomerase 4 subunit A
Authors:Vos, S.M, Stewart, N.K, Oakley, M.G, Berger, J.M.
Deposit date:2013-09-09
Release date:2013-10-23
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for the MukB-topoisomerase IV interaction and its functional implications in vivo.
Embo J., 32, 2013
8UHA
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BU of 8uha by Molmil
Structure of paused transcription complex Pol II-DSIF-NELF - tilted
Descriptor: DNA (28-MER), DNA (38-MER), DNA-directed RNA polymerase II subunit E, ...
Authors:Vos, S.M, Su, B.G.
Deposit date:2023-10-08
Release date:2024-03-20
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Distinct negative elongation factor conformations regulate RNA polymerase II promoter-proximal pausing.
Mol.Cell, 2024
8UI0
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BU of 8ui0 by Molmil
Structure of poised transcription complex Pol II-DSIF-NELF - pre-translocated
Descriptor: DNA, DNA (38-MER), DNA-directed RNA polymerase II subunit E, ...
Authors:Vos, S.M, Su, B.G.
Deposit date:2023-10-09
Release date:2024-03-20
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Distinct negative elongation factor conformations regulate RNA polymerase II promoter-proximal pausing.
Mol.Cell, 2024
8UHG
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BU of 8uhg by Molmil
Structure of paused transcription complex Pol II-DSIF-NELF - poised post-translocated
Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ...
Authors:Vos, S.M, Su, B.G.
Deposit date:2023-10-09
Release date:2024-03-20
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Distinct negative elongation factor conformations regulate RNA polymerase II promoter-proximal pausing.
Mol.Cell, 84, 2024
1A98
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BU of 1a98 by Molmil
XPRTASE FROM E. COLI COMPLEXED WITH GMP
Descriptor: XANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE
Authors:Vos, S, Parry, R.J, Burns, M.R, De Jersey, J, Martin, J.L.
Deposit date:1998-04-16
Release date:1998-06-17
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structures of free and complexed forms of Escherichia coli xanthine-guanine phosphoribosyltransferase.
J.Mol.Biol., 282, 1998
1A97
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BU of 1a97 by Molmil
XPRTASE FROM E. COLI COMPLEXED WITH GMP
Descriptor: BORIC ACID, GUANOSINE-5'-MONOPHOSPHATE, XANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE
Authors:Vos, S, Parry, R.J, Burns, M.R, De Jersey, J, Martin, J.L.
Deposit date:1998-04-16
Release date:1998-11-11
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structures of free and complexed forms of Escherichia coli xanthine-guanine phosphoribosyltransferase.
J.Mol.Biol., 282, 1998
1A95
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BU of 1a95 by Molmil
XPRTASE FROM E. COLI COMPLEXED WITH MG:CPRPP AND GUANINE
Descriptor: 1-ALPHA-PYROPHOSPHORYL-2-ALPHA,3-ALPHA-DIHYDROXY-4-BETA-CYCLOPENTANE-METHANOL-5-PHOSPHATE, BORIC ACID, GUANINE, ...
Authors:Vos, S, Parry, R.J, Burns, M.R, De Jersey, J, Martin, J.L.
Deposit date:1998-04-16
Release date:1998-11-11
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of free and complexed forms of Escherichia coli xanthine-guanine phosphoribosyltransferase.
J.Mol.Biol., 282, 1998
1A96
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BU of 1a96 by Molmil
XPRTASE FROM E. COLI WITH BOUND CPRPP AND XANTHINE
Descriptor: 1-ALPHA-PYROPHOSPHORYL-2-ALPHA,3-ALPHA-DIHYDROXY-4-BETA-CYCLOPENTANE-METHANOL-5-PHOSPHATE, BORIC ACID, MAGNESIUM ION, ...
Authors:Vos, S, Parry, R.J, Burns, M.R, De Jersey, J, Martin, J.L.
Deposit date:1998-04-16
Release date:1998-11-11
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of free and complexed forms of Escherichia coli xanthine-guanine phosphoribosyltransferase.
J.Mol.Biol., 282, 1998
3B9G
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BU of 3b9g by Molmil
Crystal structure of loop deletion mutant of Trypanosoma vivax nucleoside hydrolase (3GTvNH) in complex with ImmH
Descriptor: 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL, CALCIUM ION, IAG-nucleoside hydrolase, ...
Authors:Vandemeulebroucke, A, De Vos, S, Van Holsbeke, E, Steyaert, J, Versees, W.
Deposit date:2007-11-05
Release date:2008-04-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:A Flexible Loop as a Functional Element in the Catalytic Mechanism of Nucleoside Hydrolase from Trypanosoma vivax.
J.Biol.Chem., 283, 2008
5L3X
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BU of 5l3x by Molmil
Crystal structure of negative elongation factor subcomplex NELF-AC
Descriptor: CHLORIDE ION, Negative elongation factor A, Negative elongation factor C/D
Authors:Poellmann, D, Vos, S.M, Cramer, P.
Deposit date:2016-05-24
Release date:2016-06-22
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Architecture and RNA binding of the human negative elongation factor.
Elife, 5, 2016
1G9S
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BU of 1g9s by Molmil
CRYSTAL STRUCTURE OF A COMPLEX BETWEEN E.COLI HPRT AND IMP
Descriptor: ANY 5'-MONOPHOSPHATE NUCLEOTIDE, HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE, INOSINIC ACID
Authors:Guddat, L.W, Vos, S, Martin, J.L, Keough, D.T, de Jersey, J.
Deposit date:2000-11-27
Release date:2002-08-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures of free, IMP-, and GMP-bound Escherichia coli hypoxanthine phosphoribosyltransferase.
Protein Sci., 11, 2002
1G9T
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BU of 1g9t by Molmil
CRYSTAL STRUCTURE OF E.COLI HPRT-GMP COMPLEX
Descriptor: ANY 5'-MONOPHOSPHATE NUCLEOTIDE, GUANOSINE-5'-MONOPHOSPHATE, HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE
Authors:Guddat, L.W, Vos, S, Martin, J.L, keough, D.T, de Jersey, J.
Deposit date:2000-11-28
Release date:2002-08-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures of free, IMP-, and GMP-bound Escherichia coli hypoxanthine phosphoribosyltransferase.
Protein Sci., 11, 2002
1GRV
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BU of 1grv by Molmil
Hypoxanthine Phosphoribosyltransferase from E. coli
Descriptor: HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE, MAGNESIUM ION
Authors:Guddat, L.W, Vos, S, Martin, J.L, Keough, D.T, De Jersey, J.
Deposit date:2001-12-17
Release date:2002-12-13
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal Structures of Free, Imp-, and Gmp- Bound Escherichia Coli Hypoxanthine Phosphoribosyltransferase
Protein Sci., 11, 2002
7UNC
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BU of 7unc by Molmil
Pol II-DSIF-SPT6-PAF1c-TFIIS complex with rewrapped nucleosome
Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB7, ...
Authors:Filipovski, M, Vos, S.M, Farnung, L.
Deposit date:2022-04-10
Release date:2022-10-19
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural basis of nucleosome retention during transcription elongation.
Science, 376, 2022
1FZU
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BU of 1fzu by Molmil
RNAse T1 V78A mutant
Descriptor: CALCIUM ION, GUANOSINE-2'-MONOPHOSPHATE, GUANYL-SPECIFIC RIBONUCLEASE T1
Authors:De Vos, S, Loris, R, Steyaert, J.
Deposit date:2000-10-04
Release date:2000-10-25
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Hydrophobic core manipulations in ribonuclease T1.
Biochemistry, 40, 2001
1G02
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BU of 1g02 by Molmil
Ribonuclease T1 V16S mutant
Descriptor: CALCIUM ION, GUANOSINE-2'-MONOPHOSPHATE, GUANYL-SPECIFIC RIBONUCLEASE T1
Authors:De Vos, S, Loris, R, Steyaert, J.
Deposit date:2000-10-05
Release date:2000-10-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Hydrophobic core manipulations in ribonuclease T1.
Biochemistry, 40, 2001
1FYS
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BU of 1fys by Molmil
Ribonuclease T1 V16C mutant
Descriptor: CALCIUM ION, GUANOSINE-2'-MONOPHOSPHATE, GUANYL-SPECIFIC RIBONUCLEASE T1
Authors:De Vos, S, Loris, R, Steyaert, J.
Deposit date:2000-10-03
Release date:2000-10-25
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Hydrophobic core manipulations in ribonuclease T1.
Biochemistry, 40, 2001
7UND
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BU of 7und by Molmil
Pol II-DSIF-SPT6-PAF1c-TFIIS-nucleosome complex (stalled at +38)
Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB7, ...
Authors:Filipovski, M, Vos, S.M, Farnung, L.
Deposit date:2022-04-10
Release date:2022-10-19
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural basis of nucleosome retention during transcription elongation.
Science, 376, 2022
1HYF
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BU of 1hyf by Molmil
RIBONUCLEASE T1 V16A MUTANT IN COMPLEX WITH SR2+
Descriptor: GUANOSINE-2'-MONOPHOSPHATE, GUANYL-SPECIFIC RIBONUCLEASE T1, STRONTIUM ION
Authors:De Swarte, J, De Vos, S, Langhorst, U, Steyaert, J, Loris, R.
Deposit date:2001-01-19
Release date:2001-02-14
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The contribution of metal ions to the conformational stability of ribonuclease T1: crystal versus solution.
Eur.J.Biochem., 268, 2001

 

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