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PDB: 37 results

3RFY
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Crystal structure of arabidopsis thaliana cyclophilin 38 (ATCYP38)
Descriptor: Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic
Authors:Vasudevan, D, Swaminathan, K.
Deposit date:2011-04-07
Release date:2012-06-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Crystal structure of Arabidopsis cyclophilin38 reveals a previously uncharacterized immunophilin fold and a possible autoinhibitory mechanism.
Plant Cell, 24, 2012
3LZ1
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Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 DNA Sequence (orientation 2)
Descriptor: CHLORIDE ION, DNA (145-MER), Histone H2A, ...
Authors:Vasudevan, D, Chua, E.Y.D, Davey, C.A.
Deposit date:2010-03-01
Release date:2010-09-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of nucleosome core particles containing the '601' strong positioning sequence
J.Mol.Biol., 403, 2010
3LZ0
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Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 DNA Sequence (orientation 1)
Descriptor: CHLORIDE ION, DNA (145-MER), Histone H2A, ...
Authors:Vasudevan, D, Chua, E.Y.D, Davey, C.A.
Deposit date:2010-03-01
Release date:2010-09-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of nucleosome core particles containing the '601' strong positioning sequence
J.Mol.Biol., 403, 2010
3WDC
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N-terminal domain of Mycobacterium tuberculosis ClpC1 bound to Cyclomarin A
Descriptor: ACETATE ION, Cyclomarin A, Probable ATP-dependent Clp protease ATP-binding subunit
Authors:Vasudevan, D, Noble, C.G.
Deposit date:2013-06-14
Release date:2013-09-18
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Structural basis of mycobacterial inhibition by cyclomarin A
J.Biol.Chem., 288, 2013
3WDD
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Mutant N-terminal domain of Mycobacterium tuberculosis ClpC1, F2Y, bound to Cyclomarin A
Descriptor: ACETATE ION, Cyclomarin A, Probable ATP-dependent Clp protease ATP-binding subunit
Authors:Vasudevan, D, Noble, C.G.
Deposit date:2013-06-14
Release date:2013-09-18
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Structural basis of mycobacterial inhibition by cyclomarin A
J.Biol.Chem., 288, 2013
3WDE
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Mutant N-terminal domain of Mycobacterium tuberculosis ClpC1, F80Y, bound to Cyclomarin A
Descriptor: ACETATE ION, Cyclomarin A, Probable ATP-dependent Clp protease ATP-binding subunit
Authors:Vasudevan, D, Noble, C.G.
Deposit date:2013-06-14
Release date:2013-09-18
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Structural basis of mycobacterial inhibition by cyclomarin A
J.Biol.Chem., 288, 2013
3WDB
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N-terminal domain of Mycobacterium tuberculosis ClpC1
Descriptor: FORMIC ACID, Probable ATP-dependent Clp protease ATP-binding subunit
Authors:Vasudevan, D, Noble, C.G.
Deposit date:2013-06-14
Release date:2013-09-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Structural basis of mycobacterial inhibition by cyclomarin A
J.Biol.Chem., 288, 2013
5FOE
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Crystal structure of the C. elegans Protein O-fucosyltransferase 2 (CePOFUT2) double mutant (R298K-R299K) in complex with GDP and the human TSR1 from thrombospondin 1
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, GDP-fucose protein O-fucosyltransferase 2,Thrombospondin-1, ...
Authors:Valero-Gonzalez, J, Leonhard-Melief, C, Lira-Navarrete, E, Jimenez-Oses, G, Hernandez-Ruiz, C, Pallares, M.C, Yruela, I, Vasudevan, D, Lostao, A, Corzana, F, Takeuchi, H, Haltiwanger, R.S, Hurtado-Guerrero, R.
Deposit date:2015-11-19
Release date:2016-01-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:A Proactive Role of Water Molecules in Acceptor Recognition of Thrombospondin Type 1 Repeats by Protein-O-Fucosyltransferase 2
Nat.Chem.Biol., 12, 2016
5XHN
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Crystal structure of Frog M-ferritin K104E mutant
Descriptor: CHLORIDE ION, Ferritin, middle subunit, ...
Authors:Jagdev, M.K, Vasudevan, D.
Deposit date:2017-04-21
Release date:2017-08-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Surface charge dependent separation of modified and hybrid ferritin in native PAGE: Impact of lysine 104
Biochim. Biophys. Acta, 1865, 2017
5XHM
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Crystal structure of Frog M-ferritin D40A mutant
Descriptor: CHLORIDE ION, Ferritin, middle subunit, ...
Authors:Jagdev, M.K, Vasudevan, D.
Deposit date:2017-04-21
Release date:2017-08-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Surface charge dependent separation of modified and hybrid ferritin in native PAGE: Impact of lysine 104
Biochim. Biophys. Acta, 1865, 2017
5XHI
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Crystal structure of Frog M-ferritin D38A mutant
Descriptor: CHLORIDE ION, Ferritin, middle subunit, ...
Authors:Jagdev, M.K, Vasudevan, D.
Deposit date:2017-04-21
Release date:2017-08-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Surface charge dependent separation of modified and hybrid ferritin in native PAGE: Impact of lysine 104
Biochim. Biophys. Acta, 1865, 2017
8WZL
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Arabidopsis thaliana Histone deacetylase 7 (HDA7)
Descriptor: Histone deacetylase 7, SULFATE ION
Authors:Saharan, K, Vasudevan, D.
Deposit date:2023-11-02
Release date:2024-05-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure-function analyses reveal Arabidopsis thaliana HDA7 to be an inactive histone deacetylase.
Curr Res Struct Biol, 7, 2024
8IBO
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Crystal structure of Wild-Type Mycobacterium tuberculosis ClpC1 N-terminal domain in complex with Lassomycin
Descriptor: ACETATE ION, Lassomycin, Negative regulator of genetic competence ClpC/mecB
Authors:Jagdev, M.K, Vasudevan, D.
Deposit date:2023-02-10
Release date:2023-09-20
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Crystal structure of the N-terminal domain of MtClpC1 in complex with the anti-mycobacterial natural peptide Lassomycin.
Int.J.Biol.Macromol., 253, 2023
8IBP
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Crystal structure of Mycobacterium tuberculosis R21K ClpC1 N-terminal domain in complex with Lassomycin
Descriptor: ACETATE ION, Lassomycin, Negative regulator of genetic competence ClpC/mecB
Authors:Jagdev, M.K, Vasudevan, D.
Deposit date:2023-02-10
Release date:2023-09-20
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of the N-terminal domain of MtClpC1 in complex with the anti-mycobacterial natural peptide Lassomycin.
Int.J.Biol.Macromol., 253, 2023
7BUP
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BU of 7bup by Molmil
Crystal structure of PCNA from pathogenic yeast Candida albicans
Descriptor: Proliferating cell nuclear antigen
Authors:sundaram, R, Vasudevan, D.
Deposit date:2020-04-07
Release date:2021-02-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural analyses of PCNA from the fungal pathogen Candida albicans identify three regions with species-specific conformations.
Febs Lett., 595, 2021
6ICE
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BU of 6ice by Molmil
Crystal structure of Hamster MIF
Descriptor: Macrophage migration inhibitory factor
Authors:Sundaram, R, Vasudevan, D.
Deposit date:2018-09-05
Release date:2019-09-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Macrophage migration inhibitory factor of Syrian golden hamster shares structural and functional similarity with human counterpart and promotes pancreatic cancer.
Sci Rep, 9, 2019
5GUI
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BU of 5gui by Molmil
Crystal structure of the N-terminal Domain of Caseinolytic protease associated chaperone ClpC1 from Arabidopsis thaliana
Descriptor: Chaperone protein ClpC1, chloroplastic, PHOSPHATE ION
Authors:Jagdev, M.K, Vasudevan, D.
Deposit date:2016-08-29
Release date:2017-03-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal structures reveal N-terminal Domain of Arabidopsis thaliana ClpD to be highly divergent from that of ClpC1.
Sci Rep, 7, 2017
5GKM
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Crystal structure of the N-terminal Domain of Caseinolytic protease associated chaperone ClpD from Arabidopsis thaliana
Descriptor: AT5g51070/K3K7_27
Authors:Mohapatra, C, Vasudevan, D.
Deposit date:2016-07-04
Release date:2017-03-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures reveal N-terminal Domain of Arabidopsis thaliana ClpD to be highly divergent from that of ClpC1.
Sci Rep, 7, 2017
7VRR
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Crystal structure of Arabidopsis thaliana HDT1
Descriptor: Histone deacetylase HDT1
Authors:Kumar, A, Bobde, R.C, Vasudevan, D.
Deposit date:2021-10-23
Release date:2022-09-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Plant-specific HDT family histone deacetylases are nucleoplasmins.
Plant Cell, 34, 2022
7WIM
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Crystal structure of Arabidopsis thaliana FKBP43 N-terminal domain
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP43
Authors:Singh, A.K, Saharan, K, Baral, S, Vasudevan, D.
Deposit date:2022-01-03
Release date:2022-09-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:The plant nucleoplasmin AtFKBP43 needs its extended arms for histone interaction.
Biochim Biophys Acta Gene Regul Mech, 1865, 2022
6J2M
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BU of 6j2m by Molmil
Crystal structure of AtFKBP53 C-terminal domain
Descriptor: 8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN, CHLORIDE ION, Peptidyl-prolyl cis-trans isomerase FKBP53
Authors:Singh, A.K, Vasudevan, D.
Deposit date:2019-01-01
Release date:2019-12-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:AtFKBP53: a chimeric histone chaperone with functional nucleoplasmin and PPIase domains.
Nucleic Acids Res., 48, 2020
6J2Z
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AtFKBP53 N-terminal Nucleoplasmin Domain
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP53
Authors:Singh, A.K, Vasudevan, D.
Deposit date:2019-01-03
Release date:2019-12-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:AtFKBP53: a chimeric histone chaperone with functional nucleoplasmin and PPIase domains.
Nucleic Acids Res., 48, 2020
6JQV
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Crystal structure of Arabidopsis thaliana NRP2
Descriptor: NAP1-related protein 2
Authors:Kumar, A, Vasudevan, D.
Deposit date:2019-04-01
Release date:2019-07-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.42 Å)
Cite:Structural Characterization ofArabidopsis thalianaNAP1-Related Protein 2 (AtNRP2) and Comparison with its Homolog AtNRP1.
Molecules, 24, 2019
7CC8
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Crystal structure of White Spot Syndrome Virus Thymidylate Synthase - Apo form
Descriptor: SULFATE ION, TRIETHYLENE GLYCOL, Thymidylate Synthase
Authors:Kumar, S, Panchal, N.V, Shaikh, N, Vasudevan, D.
Deposit date:2020-06-16
Release date:2020-11-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure analysis of thymidylate synthase from white spot syndrome virus reveals WSSV-specific structural elements.
Int.J.Biol.Macromol., 167, 2021
7EP8
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Crystal structure of PCNA from Neurospora crassa
Descriptor: Proliferating cell nuclear antigen
Authors:Sundaram, R, Vasudevan, D.
Deposit date:2021-04-26
Release date:2021-06-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Interdomain connecting loop and J loop structures determine cross-species compatibility of PCNA.
J.Biol.Chem., 297, 2021

 

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