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PDB: 180 results

9BAQ
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BU of 9baq by Molmil
CryoEM structure of DIM2-HP1-H3K9me3-DNA complex
Descriptor: DNA (5'-D(*AP*CP*TP*AP*CP*T)-R(P*(PYO))-D(P*CP*TP*CP*CP*TP*CP*CP*TP*AP*CP*T)-3'), DNA (5'-D(*AP*GP*TP*AP*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*TP*AP*GP*T)-3'), DNA (cytosine-5-)-methyltransferase, ...
Authors:Song, J, Shao, Z.
Deposit date:2024-04-04
Release date:2024-07-24
Method:ELECTRON MICROSCOPY (2.79 Å)
Cite:CryoEM structure of DIM2-HP1-H3K9me3-DNA complex
To Be Published
9BAP
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BU of 9bap by Molmil
CryoEM structure of Apo-DIM2
Descriptor: DNA (cytosine-5-)-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION
Authors:Song, J, Shao, Z.
Deposit date:2024-04-04
Release date:2024-07-24
Method:ELECTRON MICROSCOPY (2.88 Å)
Cite:CryoEM structure of Apo-DIM2
To Be Published
9BAZ
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BU of 9baz by Molmil
CryoEM structure of DIM2-HP1 complex
Descriptor: DNA (cytosine-5-)-methyltransferase, Heterochromatin protein one, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Song, J, Shao, Z.
Deposit date:2024-04-05
Release date:2024-07-24
Method:ELECTRON MICROSCOPY (2.76 Å)
Cite:CryoEM structure of DIM2-HP1 complex
To Be Published
6B9L
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BU of 6b9l by Molmil
Crystal structure of EphA2 with peptide 135E2
Descriptor: Ephrin type-A receptor 2, HIS TAG CLEAVED OFF, peptide 135E2, ...
Authors:Song, J, Tan, X.
Deposit date:2017-10-10
Release date:2018-10-17
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure-Based Design of Novel EphA2 Agonistic Agents with Nanomolar Affinity in Vitro and in Cell.
ACS Chem. Biol., 13, 2018
6VIL
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BU of 6vil by Molmil
Crystal structure of mouse BAHCC1 BAH domain in complex with H3K27me3
Descriptor: BAH and coiled-coil domain-containing protein 1, Histone H3.1
Authors:Song, J, Lu, J.
Deposit date:2020-01-13
Release date:2020-09-16
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.301 Å)
Cite:BAHCC1 binds H3K27me3 via a conserved BAH module to mediate gene silencing and oncogenesis.
Nat.Genet., 52, 2020
8FYH
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BU of 8fyh by Molmil
G4 RNA-mediated PRC2 dimer
Descriptor: G4 RNA, Histone-binding protein RBBP4, Histone-lysine N-methyltransferase EZH2, ...
Authors:Song, J, Kasinath, V.
Deposit date:2023-01-26
Release date:2023-10-04
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis for inactivation of PRC2 by G-quadruplex RNA.
Science, 381, 2023
5W3T
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BU of 5w3t by Molmil
Crystal structure of PopP2 in complex with IP6
Descriptor: GLYCEROL, INOSITOL HEXAKISPHOSPHATE, PopP2 protein
Authors:Song, J, Zhang, Z.M.
Deposit date:2017-06-08
Release date:2017-08-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Mechanism of host substrate acetylation by a YopJ family effector.
Nat Plants, 3, 2017
4DA4
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BU of 4da4 by Molmil
Structure of mouse DNMT1 (731-1602) bound to hemimethylated CpG DNA
Descriptor: CITRIC ACID, DNA (cytosine-5)-methyltransferase 1, DNA_LOWER_STRAND, ...
Authors:Song, J, Patel, D.J.
Deposit date:2012-01-12
Release date:2012-02-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure-Based Mechanistic Insights into DNMT1-Mediated Maintenance DNA Methylation.
Science, 335, 2012
4DOV
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BU of 4dov by Molmil
Structure of free mouse ORC1 BAH domain
Descriptor: Origin recognition complex subunit 1
Authors:Song, J, Patel, D.J.
Deposit date:2012-02-10
Release date:2012-03-07
Last modified:2012-04-11
Method:X-RAY DIFFRACTION (1.696 Å)
Cite:The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier-Gorlin syndrome.
Nature, 484, 2012
4ZDS
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BU of 4zds by Molmil
Crystal Structure of core DNA binding domain of Arabidopsis Thaliana Transcription Factor Ethylene-Insensitive 3
Descriptor: Protein ETHYLENE INSENSITIVE 3
Authors:Song, J, Zhu, C, Zhang, X, Wen, X, Liu, L, Peng, J, Guo, H, Yi, C.
Deposit date:2015-04-18
Release date:2015-09-23
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Biochemical and Structural Insights into the Mechanism of DNA Recognition by Arabidopsis ETHYLENE INSENSITIVE3.
Plos One, 10, 2015
2ASQ
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BU of 2asq by Molmil
Solution Structure of SUMO-1 in Complex with a SUMO-binding Motif (SBM)
Descriptor: Protein inhibitor of activated STAT2, Small ubiquitin-related modifier 1
Authors:Song, J, Zhang, Z, Hu, W, Chen, Y.
Deposit date:2005-08-23
Release date:2005-10-11
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Small Ubiquitin-like Modifier (SUMO) Recognition of a SUMO Binding Motif: A reversal of the bound orientation
J.Biol.Chem., 280, 2005
1XOY
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BU of 1xoy by Molmil
Solution structure of At3g04780.1, an Arabidopsis ortholog of the C-terminal domain of human thioredoxin-like protein
Descriptor: hypothetical protein At3g04780.1
Authors:Song, J, Robert, C.T, Lee, M.S, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2004-10-07
Release date:2004-10-12
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of At3g04780.1-des15, an Arabidopsis thaliana ortholog of the C-terminal domain of human thioredoxin-like protein.
Protein Sci., 14, 2005
1Y4O
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BU of 1y4o by Molmil
Solution structure of a mouse cytoplasmic Roadblock/LC7 dynein light chain
Descriptor: Dynein light chain 2A, cytoplasmic
Authors:Song, J, Tyler, R.C, Lee, M.S, Tyler, E.M, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2004-12-01
Release date:2005-01-18
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of isoform 1 of Roadblock/LC7, a light chain in the dynein complex.
J.Mol.Biol., 354, 2005
1M8B
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BU of 1m8b by Molmil
Solution structure of the C State of turkey ovomucoid at pH 2.5
Descriptor: Ovomucoid
Authors:Song, J, Laskowski Jr, M, Qasim, M.A, Markley, J.L.
Deposit date:2002-07-24
Release date:2002-09-04
Last modified:2021-10-27
Method:SOLUTION NMR
Cite:Two conformational states of Turkey ovomucoid third domain at low pH: three-dimensional structures, internal dynamics, and interconversion kinetics and thermodynamics.
Biochemistry, 42, 2003
1M8C
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BU of 1m8c by Molmil
SOLUTION STRUCTURE OF THE T State OF TURKEY OVOMUCOID AT PH 2.5
Descriptor: Ovomucoid
Authors:Song, J, Laskowski Jr, M, Qasim, M.A, Markley, J.L.
Deposit date:2002-07-24
Release date:2002-09-04
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:Two conformational states of Turkey ovomucoid third domain at low pH: three-dimensional structures, internal dynamics, and interconversion kinetics and thermodynamics.
Biochemistry, 42, 2003
1T0G
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BU of 1t0g by Molmil
Hypothetical protein At2g24940.1 from Arabidopsis thaliana has a cytochrome b5 like fold
Descriptor: cytochrome b5 domain-containing protein
Authors:Song, J, Vinarov, D.A, Tyler, E.M, Shahan, M.N, Tyler, R.C, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2004-04-08
Release date:2004-04-13
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Hypothetical protein At2g24940.1 from Arabidopsis thaliana has a cytochrome b5 like fold
J.Biomol.NMR, 30, 2004
1TIZ
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BU of 1tiz by Molmil
Solution Structure of a Calmodulin-Like Calcium-Binding Domain from Arabidopsis thaliana
Descriptor: calmodulin-related protein, putative
Authors:Song, J, Zhao, Q, Thao, S, Frederick, R.O, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2004-06-02
Release date:2004-08-10
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Letter to the Editor: Solution structure of a calmodulin-like calcium-binding domain from Arabidopsis thaliana
J.Biomol.NMR, 30, 2004
2G2B
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BU of 2g2b by Molmil
NMR structure of the human allograft inflammatory factor 1
Descriptor: Allograft inflammatory factor 1
Authors:Song, J, Tyler, R.C, Newman, C.L, Vinarov, D, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2006-02-15
Release date:2006-02-28
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:NMR structure of the human allograft inflammatory factor 1
To be published
2JU4
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BU of 2ju4 by Molmil
NMR structure of the gamma subunit of cGMP phosphodiesterase
Descriptor: (3'R)-1'-oxyl-2',2',5',5'-tetramethyl-1,3'-bipyrrolidine-2,5-dione, Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma
Authors:Song, J, Guo, L.W, Ruoho, A.E, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2007-08-14
Release date:2007-10-16
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:Intrinsically disordered gamma-subunit of cGMP phosphodiesterase encodes functionally relevant transient secondary and tertiary structure.
Proc.Natl.Acad.Sci.USA, 105, 2008
2JWN
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BU of 2jwn by Molmil
Solution NMR structure of the protease-resistent domain of Xenopus laevis ePABP2
Descriptor: Embryonic polyadenylate-binding protein 2-B
Authors:Song, J, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2007-10-16
Release date:2007-10-30
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structural basis for RNA recognition by a type II poly(A)-binding protein.
Proc.Natl.Acad.Sci.USA, 105, 2008
2FFT
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BU of 2fft by Molmil
NMR structure of Spinach Thylakoid Soluble Phosphoprotein of 9 kDa in SDS Micelles
Descriptor: thylakoid soluble phosphoprotein
Authors:Song, J, Carlberg, I, Lee, M.S, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2005-12-20
Release date:2006-01-17
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Micelle-induced folding of spinach thylakoid soluble phosphoprotein of 9 kDa and its functional implications.
Biochemistry, 45, 2006
2ETT
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BU of 2ett by Molmil
Solution Structure of Human Sorting Nexin 22 PX Domain
Descriptor: Sorting nexin-22
Authors:Song, J, Zhao, Q, Tyler, R.C, Lee, M.S, Newman, C.L, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2005-10-27
Release date:2005-11-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of human sorting nexin 22.
Protein Sci., 16, 2007
2GW6
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BU of 2gw6 by Molmil
NMR structure of the human tRNA endonuclease SEN15 subunit
Descriptor: tRNA-splicing endonuclease subunit Sen15
Authors:Song, J, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2006-05-03
Release date:2006-05-16
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Three-dimensional structure determined for a subunit of human tRNA splicing endonuclease (Sen15) reveals a novel dimeric fold.
J.Mol.Biol., 366, 2007
2JMU
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BU of 2jmu by Molmil
NMR structure of the mouse thiamine triphosphatase
Descriptor: Thiamine-triphosphatase
Authors:Song, J, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2006-12-05
Release date:2006-12-19
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Structural basis for the catalytic mechanism of mammalian 25-kDa thiamine triphosphatase.
J.Biol.Chem., 283, 2008
2KGG
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BU of 2kgg by Molmil
Solution Structure of JARID1A C-terminal PHD finger
Descriptor: Histone demethylase JARID1A, ZINC ION
Authors:Song, J, Wang, Z, Patel, D.J.
Deposit date:2009-03-11
Release date:2009-05-05
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Haematopoietic malignancies caused by dysregulation of a chromatin-binding PHD finger.
Nature, 459, 2009

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PDB entries from 2024-10-30

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