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PDB: 457 results

2H5E
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BU of 2h5e by Molmil
Crystal structure of E.coli polypeptide release factor RF3
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Peptide chain release factor RF-3
Authors:Song, H.W, Zhou, Z.H.
Deposit date:2006-05-26
Release date:2007-05-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:RF3 induces ribosomal conformational changes responsible for dissociation of class I release factors
Cell(Cambridge,Mass.), 129, 2007
4U1T
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BU of 4u1t by Molmil
The crystal structure of holo CalE6, a methionine gamma lyase from Micromonospora echinospora
Descriptor: CalE6, SULFATE ION
Authors:Song, H.G, Guo, Z.H.
Deposit date:2014-07-16
Release date:2015-01-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Identification and Characterization of a Methionine gamma-Lyase in the Calicheamicin Biosynthetic Cluster of Micromonospora echinospora
Chembiochem, 16, 2015
1GMV
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BU of 1gmv by Molmil
Structure of UreE
Descriptor: UREE
Authors:Song, H.K, Mulrooney, S.B, Huber, R, Hausinger, R.
Deposit date:2001-09-24
Release date:2001-11-28
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of Klebsiella Aerogenes Uree, a Nickel-Binding Metallochaperone for Urease Activation.
J.Biol.Chem., 276, 2001
4I4Z
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BU of 4i4z by Molmil
Synechocystis sp. PCC 6803 1,4-dihydroxy-2-naphthoyl-coenzyme A synthase (MenB) in complex with salicylyl-CoA
Descriptor: BICARBONATE ION, MALONATE ION, Naphthoate synthase, ...
Authors:Song, H.G, Sun, Y.R, Li, J, Li, Y, Jiang, M, Zhou, J.H, Guo, Z.H.
Deposit date:2012-11-28
Release date:2013-05-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of the induced-fit mechanism of 1,4-dihydroxy-2-naphthoyl coenzyme a synthase from the crotonase fold superfamily
Plos One, 8, 2013
1KCT
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BU of 1kct by Molmil
ALPHA1-ANTITRYPSIN
Descriptor: ALPHA1-ANTITRYPSIN
Authors:Song, H.K, Suh, S.W.
Deposit date:1996-08-06
Release date:1997-01-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.46 Å)
Cite:Crystal structure of an uncleaved alpha 1-antitrypsin reveals the conformation of its inhibitory reactive loop.
FEBS Lett., 377, 1995
4EML
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BU of 4eml by Molmil
Synechocystis sp. PCC 6803 1,4-dihydroxy-2-naphthoyl-coenzyme A synthase (MenB) in complex with bicarbonate
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, BICARBONATE ION, CHLORIDE ION, ...
Authors:Song, H.G.
Deposit date:2012-04-12
Release date:2012-06-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.043 Å)
Cite:Active site binding and catalytic role of bicarbonate in 1,4-dihydroxy-2-naphthoyl coenzyme A synthases from vitamin K biosynthetic pathways
Biochemistry, 51, 2012
1OX9
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BU of 1ox9 by Molmil
Crystal structure of SspB-ssrA complex
Descriptor: Stringent starvation protein B, ssrA
Authors:Song, H.K, Eck, M.J.
Deposit date:2003-04-01
Release date:2003-08-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis of degradation signal recognition by SspB, a specificity-enhancing factor for the ClpXP proteolytic machine
Mol.Cell, 12, 2003
2WSK
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BU of 2wsk by Molmil
Crystal structure of Glycogen Debranching Enzyme GlgX from Escherichia coli K-12
Descriptor: GLYCOGEN DEBRANCHING ENZYME, SULFATE ION
Authors:Song, H.-N, Park, J.-T, Jung, T.-Y, Park, K.-H, Woo, E.-J.
Deposit date:2009-09-08
Release date:2010-09-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural Rationale for the Short Branched Substrate Specificity of the Glycogen Debranching Enzyme Glgx.
Proteins, 78, 2010
8ORR
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BU of 8orr by Molmil
Outer membrane protein assembly factor BamB from Klebsiella pneumoniae
Descriptor: CADMIUM ION, Outer membrane protein assembly factor BamB
Authors:Song, H, Bolla, J.R.
Deposit date:2023-04-17
Release date:2024-04-24
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Outer membrane protein assembly factor BamB from Klebsiella pneumoniae
To Be Published
4I52
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BU of 4i52 by Molmil
scMenB im complex with 1-hydroxy-2-naphthoyl-CoA
Descriptor: 1-hydroxy-2-naphthoyl-CoA, CHLORIDE ION, Naphthoate synthase
Authors:Song, H.G, Sun, Y.R, Li, J, Li, Y, Jiang, M, Zhou, J.H, Guo, Z.H.
Deposit date:2012-11-28
Release date:2013-05-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis of the induced-fit mechanism of 1,4-dihydroxy-2-naphthoyl coenzyme a synthase from the crotonase fold superfamily
Plos One, 8, 2013
1M4Y
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BU of 1m4y by Molmil
Crystal structure of HslV from Thermotoga maritima
Descriptor: ATP-dependent protease hslV, SODIUM ION
Authors:Song, H.K, Ramachandran, R, Bochtler, M.B, Hartmann, C, Azim, M.K, Huber, R.
Deposit date:2002-07-05
Release date:2003-05-06
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Isolation and characterization of the prokaryotic proteasome homolog HslVU (ClpQY) from Thermotoga maritima and the crystal structure of HslV.
BIOPHYS.CHEM., 100, 2003
1T91
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BU of 1t91 by Molmil
crystal structure of human small GTPase Rab7(GTP)
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Ras-related protein Rab-7
Authors:Song, H, Hong, W, Wu, M, Wang, T.
Deposit date:2004-05-14
Release date:2005-05-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for recruitment of RILP by small GTPase Rab7.
Embo J., 24, 2005
2XA2
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BU of 2xa2 by Molmil
Crystal structure of trehalose synthase TreT mutant E326A from P. horikoshii in complex with UDPG
Descriptor: TREHALOSE-SYNTHASE TRET, URIDINE-5'-DIPHOSPHATE-GLUCOSE
Authors:Song, H.-N, Jung, T.-Y, Yoon, S.-M, Lee, S.-B, Lim, M.-Y, Woo, E.-J.
Deposit date:2010-03-26
Release date:2011-03-16
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Insights on the New Mechanism of Trehalose Synthesis by Trehalose Synthase Tret from Pyrococcus Horikoshii.
J.Mol.Biol., 404, 2010
2XMP
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BU of 2xmp by Molmil
Crystal structure of trehalose synthase TreT mutant E326A from P. horishiki in complex with UDP
Descriptor: TREHALOSE-SYNTHASE TRET, URIDINE-5'-DIPHOSPHATE
Authors:Song, H.-N, Jung, T.-Y, Yoon, S.-M, Lee, S.-B, Lim, M.-Y, Woo, E.-J.
Deposit date:2010-07-29
Release date:2010-10-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Insights on the New Mechanism of Trehalose Synthesis by Trehalose Synthase Tret from Pyrococcus Horikoshii.
J.Mol.Biol., 404, 2010
2DS5
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BU of 2ds5 by Molmil
Structure of the ZBD in the orthorhomibic crystal from
Descriptor: ATP-dependent Clp protease ATP-binding subunit clpX, CALCIUM ION, TETRAETHYLENE GLYCOL, ...
Authors:Song, H.K, Park, E.Y, Lee, B.G, Hong, S.B.
Deposit date:2006-06-22
Release date:2007-02-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural Basis of SspB-tail Recognition by the Zinc Binding Domain of ClpX.
J.Mol.Biol., 367, 2007
4AEF
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BU of 4aef by Molmil
THE CRYSTAL STRUCTURE OF THERMOSTABLE AMYLASE FROM THE PYROCOCCUS
Descriptor: NEOPULLULANASE (ALPHA-AMYLASE II)
Authors:Song, H.-N, Jung, T.-Y, Yoon, S.-M, Yang, S.-J, Park, K.-H, Woo, E.-J.
Deposit date:2012-01-10
Release date:2012-10-31
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:A Novel Domain Arrangement in a Monomeric Cyclodextrin-Hydrolyzing Enzyme from the Hyperthermophile Pyrococcus Furiosus.
Biochim.Biophys.Acta, 1834, 2013
2X6R
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BU of 2x6r by Molmil
Crystal structure of trehalose synthase TreT from P.horikoshi produced by soaking in trehalose
Descriptor: TREHALOSE-SYNTHASE TRET
Authors:Song, H.-N, Jung, T.-Y, Yoon, S.-M, Lim, M.-Y, Lee, S.-B, Woo, E.-J.
Deposit date:2010-02-19
Release date:2010-10-13
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Insights on the New Mechanism of Trehalose Synthesis by Trehalose Synthase Tret from Pyrococcus Horikoshii.
J.Mol.Biol., 404, 2010
2XA9
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BU of 2xa9 by Molmil
Crystal structure of trehalose synthase TreT mutant E326A from P. horikoshii in complex with UDPG
Descriptor: TREHALOSE-SYNTHASE TRET, URIDINE-5'-DIPHOSPHATE-GLUCOSE
Authors:Song, H.-N, Jung, T.-Y, Yoon, S.-M, Lee, S.-B, Lim, M.-Y, Woo, E.-J.
Deposit date:2010-03-30
Release date:2011-03-16
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Insights on the New Mechanism of Trehalose Synthesis by Trehalose Synthase Tret from Pyrococcus Horikoshii.
J.Mol.Biol., 404, 2010
2X6Q
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BU of 2x6q by Molmil
Crystal structure of trehalose synthase TreT from P.horikoshi
Descriptor: TREHALOSE-SYNTHASE TRET
Authors:Song, H.-N, Jung, T.-Y, Yoon, S.-M, Lim, M.-Y, Lee, S.-B, Woo, E.-J.
Deposit date:2010-02-19
Release date:2010-10-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Insights on the New Mechanism of Trehalose Synthesis by Trehalose Synthase Tret from Pyrococcus Horikoshii.
J.Mol.Biol., 404, 2010
2XA1
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BU of 2xa1 by Molmil
Crystal structure of trehalose synthase TreT from P.horikoshii (Seleno derivative)
Descriptor: TREHALOSE-SYNTHASE TRET
Authors:Song, H.-N, Jung, T.-Y, Yoon, S.-M, Lee, S.-B, Lim, M.-Y, Woo, E.-J.
Deposit date:2010-03-26
Release date:2010-10-13
Last modified:2012-06-27
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Structural Insights on the New Mechanism of Trehalose Synthesis by Trehalose Synthase Tret from Pyrococcus Horikoshii.
J.Mol.Biol., 404, 2010
1VJS
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BU of 1vjs by Molmil
STRUCTURE OF ALPHA-AMYLASE PRECURSOR
Descriptor: ALPHA-AMYLASE
Authors:Song, H.K, Hwang, K.Y, Chang, C, Suh, S.W.
Deposit date:1996-10-02
Release date:1997-03-12
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of thermostable alpha-amylase from Bacillus licheniformis refined at 1.7 A resolution
Mol.Cell, 7, 1997
4E1U
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BU of 4e1u by Molmil
[Ru(bpy)2 dppz]2+ bound to DNA
Descriptor: 5'-D(*CP*GP*GP*AP*AP*AP*TP*TP*AP*CP*CP*G)-3', BARIUM ION, Delta-[Ru(bpy)2dppz]2+
Authors:Song, H, Kaiser, J.T, Barton, J.K.
Deposit date:2012-03-07
Release date:2012-06-20
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (0.92 Å)
Cite:Crystal structure of delta-[Ru(bpy)2dppz]2+ bound to mismatched DNA reveals side-by-side metalloinsertion and intercalation.
Nat Chem, 4, 2012
6K7O
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BU of 6k7o by Molmil
Complex structure of LILRB4 and h128-3 antibody
Descriptor: Leukocyte immunoglobulin-like receptor subfamily B member 4, h128-3 Fab heavy chain, h128-3 Fab light chain
Authors:Song, H, Chai, Y, Xu, X, Gao, F.G.
Deposit date:2019-06-08
Release date:2019-07-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.004 Å)
Cite:Disrupting LILRB4/APOE Interaction by an Efficacious Humanized Antibody Reverses T-cell Suppression and Blocks AML Development.
Cancer Immunol Res, 7, 2019
1OX8
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BU of 1ox8 by Molmil
Crystal structure of SspB
Descriptor: Stringent starvation protein B
Authors:Song, H.K, Eck, M.J.
Deposit date:2003-04-01
Release date:2003-08-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis of degradation signal recognition by SspB, a specificity-enhancing factor for the ClpXP proteolytic machine
Mol.Cell, 12, 2003
6GEW
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BU of 6gew by Molmil
OphA Y63F-sinefungin complex
Descriptor: OphA, S-ADENOSYL-L-HOMOCYSTEINE, SINEFUNGIN
Authors:Song, H, Naismith, J.H.
Deposit date:2018-04-27
Release date:2018-09-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A molecular mechanism for the enzymatic methylation of nitrogen atoms within peptide bonds.
Sci Adv, 4, 2018

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