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PDB: 207 results

1WU3
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BU of 1wu3 by Molmil
Crystal structure of recombinant murine interferon beta
Descriptor: Interferon beta
Authors:Senda, T, Saitoh, S, Mitsui, Y.
Deposit date:2004-12-01
Release date:2004-12-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Refined crystal structure of recombinant murine interferon-beta at 2.15 A resolution
J.Mol.Biol., 253, 1995
2GR0
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BU of 2gr0 by Molmil
Crystal structure of Ferredoxin reductase, BphA4 (oxidized form, NAD+ complex)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, FLAVIN-ADENINE DINUCLEOTIDE, ferredoxin reductase
Authors:Senda, T, Senda, M.
Deposit date:2006-04-22
Release date:2007-05-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2GR1
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BU of 2gr1 by Molmil
Crystal structure of Ferredoxin reductase, BphA4 (hydroquinone)
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, ferredoxin reductase
Authors:Senda, T, Senda, M.
Deposit date:2006-04-22
Release date:2007-05-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A ferredoxin reductase BphA4 uses a butterfly motion of FAD to regulate affinity for ferredoxin
To be Published
2GR3
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Crystal structure of Ferredoxin reductase, BphA4 (oxidized form)
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, GLYCEROL, ...
Authors:Senda, T, Senda, M.
Deposit date:2006-04-22
Release date:2007-05-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A ferredoxin reductase BphA4 uses a butterfly motion of FAD to regulate affinity for ferredoxin
To be Published
2GQW
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BU of 2gqw by Molmil
Crystal structure of Ferredoxin reductase, BphA4 (oxidized form)
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, GLYCEROL, ...
Authors:Senda, T, Senda, M.
Deposit date:2006-04-22
Release date:2007-05-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2GR2
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BU of 2gr2 by Molmil
Crystal structure of Ferredoxin reductase, BphA4 (oxidized form)
Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, FLAVIN-ADENINE DINUCLEOTIDE, ferredoxin reductase
Authors:Senda, T, Senda, M.
Deposit date:2006-04-22
Release date:2007-05-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:A ferredoxin reductase BphA4 uses a butterfly motion of FAD to regulate affinity for ferredoxin
To be Published
1QG7
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BU of 1qg7 by Molmil
STROMA CELL-DERIVED FACTOR-1ALPHA (SDF-1ALPHA)
Descriptor: STROMAL CELL-DERIVED FACTOR 1 ALPHA, SULFATE ION
Authors:Senda, T, Nandhagopal, N, Sugimoto, K, Mitsui, Y.
Deposit date:1999-04-21
Release date:2001-02-28
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of recombinant native SDF-1alpha with additional mutagenesis studies: an attempt at a more comprehensive interpretation of accumulated structure-activity relationship data.
J.Interferon Cytokine Res., 20, 2000
2YVG
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BU of 2yvg by Molmil
crystal structure of ferredoxin reductase, BPHA4 (blue-semiquinone)
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin reductase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Senda, T, Senda, M.
Deposit date:2007-04-12
Release date:2007-10-16
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2YVJ
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BU of 2yvj by Molmil
Crystal structure of the ferredoxin-ferredoxin reductase (BPHA3-BPHA4)complex
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Biphenyl dioxygenase ferredoxin subunit, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Senda, T, Senda, M.
Deposit date:2007-04-12
Release date:2007-10-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2YVF
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BU of 2yvf by Molmil
Crystal structure of ferredoxin reductase BPHA4 (hydroquinone)
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, Ferredoxin reductase, ...
Authors:Senda, T, Senda, M.
Deposit date:2007-04-12
Release date:2007-10-16
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
1EIR
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BU of 1eir by Molmil
2,3-DIHYDROXYBIPHENYL-1,2-DIOXYGENASE
Descriptor: 2,3-DIHYDROXYBIPHENYL-1,2-DIOXYGENASE, BIPHENYL-2,3-DIOL, FE (III) ION
Authors:Senda, T.
Deposit date:2000-02-28
Release date:2001-02-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of substrate free and complex forms of reactivated BphC, an extradiol type ring-cleavage dioxygenase.
J.Inorg.Biochem., 83, 2001
1EIL
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2,3-DIHYDROXYBIPHENYL-1,2-DIOXYGENASE
Descriptor: 2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE, FE (III) ION, SULFATE ION
Authors:Senda, T.
Deposit date:2000-02-26
Release date:2001-02-26
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of substrate free and complex forms of reactivated BphC, an extradiol type ring-cleavage dioxygenase.
J.Inorg.Biochem., 83, 2001
6LTB
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BU of 6ltb by Molmil
Crystal Structure of Nonribosomal peptide synthetases (NRPS), FmoA3 (S1046A)-AMPPNP bound form
Descriptor: Nonribosomal peptide synthetase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Senda, T, Harada, A.
Deposit date:2020-01-22
Release date:2021-02-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural and Functional Analyses of the Tridomain-Nonribosomal Peptide Synthetase FmoA3 for 4-Methyloxazoline Ring Formation.
Angew.Chem.Int.Ed.Engl., 60, 2021
6LTA
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BU of 6lta by Molmil
Crystal Structure of Nonribosomal peptide synthetases (NRPS), FmoA3 (S1046A)
Descriptor: ACRYLIC ACID, Nonribosomal peptide synthetase
Authors:Senda, T, Harada, A.
Deposit date:2020-01-22
Release date:2021-02-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural and Functional Analyses of the Tridomain-Nonribosomal Peptide Synthetase FmoA3 for 4-Methyloxazoline Ring Formation.
Angew.Chem.Int.Ed.Engl., 60, 2021
6LTC
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BU of 6ltc by Molmil
Crystal Structure of Nonribosomal peptide synthetases (NRPS), FmoA3 (S1046A)-alpha-methyl-L-serine-AMP bound form
Descriptor: ADENOSINE MONOPHOSPHATE, CHLORIDE ION, Nonribosomal peptide synthetase, ...
Authors:Senda, T, Harada, A.
Deposit date:2020-01-22
Release date:2021-03-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural and Functional Analyses of the Tridomain-Nonribosomal Peptide Synthetase FmoA3 for 4-Methyloxazoline Ring Formation.
Angew.Chem.Int.Ed.Engl., 60, 2021
6LTD
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BU of 6ltd by Molmil
Crystal Structure of Nonribosomal peptide synthetases (NRPS), FmoA3 (S1046A)-alpha-methyl-L-serine-AMP bound form
Descriptor: ADENOSINE MONOPHOSPHATE, Nonribosomal peptide synthetase, alpha-methyl-L-serine
Authors:Senda, T, Harada, A.
Deposit date:2020-01-22
Release date:2021-03-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (4.1 Å)
Cite:Structural and Functional Analyses of the Tridomain-Nonribosomal Peptide Synthetase FmoA3 for 4-Methyloxazoline Ring Formation.
Angew.Chem.Int.Ed.Engl., 60, 2021
5XXP
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BU of 5xxp by Molmil
Crystal structure of CbnR_DBD-DNA complex
Descriptor: DNA (25-MER), LysR-type regulatory protein
Authors:Senda, T, Senda, M.
Deposit date:2017-07-04
Release date:2018-01-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structure of the DNA-binding domain of the LysR-type transcriptional regulator CbnR in complex with a DNA fragment of the recognition-binding site in the promoter region
FEBS J., 285, 2018
1D7Y
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BU of 1d7y by Molmil
CRYSTAL STRUCTURE OF NADH-DEPENDENT FERREDOXIN REDUCTASE, BPHA4
Descriptor: FERREDOXIN REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Senda, T, Yamada, T, Sakurai, N, Kubota, M, Nishizaki, T, Masai, E, Fukuda, M, Mitsui, Y.
Deposit date:1999-10-21
Release date:2000-12-20
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase.
J.Mol.Biol., 304, 2000
1F3P
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BU of 1f3p by Molmil
FERREDOXIN REDUCTASE (BPHA4)-NADH COMPLEX
Descriptor: FERREDOXIN REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Senda, T, Yamada, T, Sakurai, N, Kubota, M, Nishizaki, T, Masai, E, Fukuda, M, Mitsuidagger, Y.
Deposit date:2000-06-06
Release date:2001-06-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase.
J.Mol.Biol., 304, 2000
1EIQ
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BU of 1eiq by Molmil
2,3-DIHYDROXYBIPHENYL-1,2-DIOXYGENASE
Descriptor: 2,3-DIHYDROXYBIPHENYL-1,2-DIOXYGENASE, FE (III) ION
Authors:Senda, T.
Deposit date:2000-02-28
Release date:2001-02-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of substrate free and complex forms of reactivated BphC, an extradiol type ring-cleavage dioxygenase.
J.Inorg.Biochem., 83, 2001
1DHY
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BU of 1dhy by Molmil
KKS102 BPHC ENZYME
Descriptor: 2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE, FE (III) ION
Authors:Senda, T, Sugiyama, K, Narita, H, Mitsui, Y.
Deposit date:1995-07-07
Release date:1995-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Three-dimensional structures of free form and two substrate complexes of an extradiol ring-cleavage type dioxygenase, the BphC enzyme from Pseudomonas sp. strain KKS102.
J.Mol.Biol., 255, 1996
4DVY
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BU of 4dvy by Molmil
Crystal structure of the Helicobacter pylori CagA oncoprotein
Descriptor: Cytotoxicity-associated immunodominant antigen
Authors:Hayashi, T, Senda, M, Morohashi, H, Higashi, H, Horio, M, Kashiba, Y, Nagase, L, Sasaya, D, Shimizu, T, Venugopalan, N, Kumeta, H, Noda, N, Inagaki, F, Senda, T, Hatakeyama, M.
Deposit date:2012-02-23
Release date:2012-07-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Tertiary Structure-Function Analysis Reveals the Pathogenic Signaling Potentiation Mechanism of Helicobacter pylori Oncogenic Effector CagA
Cell Host Microbe, 12, 2012
8XJ0
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BU of 8xj0 by Molmil
Crystal structure of AmFab mutant - P40C/E165C (Light chain), G10C/P210C(Heavy chain)
Descriptor: Adalimumab Fab Heavy chain, Adalimumab Fab Light chain
Authors:Senda, M, Yoshikawa, M, Nakamura, H, Ohkuri, T, Senda, T.
Deposit date:2023-12-20
Release date:2024-02-14
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Stabilization of adalimumab Fab through the introduction of disulfide bonds between the variable and constant domains.
Biochem.Biophys.Res.Commun., 700, 2024
7XLF
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BU of 7xlf by Molmil
Crystal structure of CH3-THF complex of methylenetetrahydrofolate reductase from Sphingobium sp. SYK-6
Descriptor: 5,10-methylenetetrahydrofolate reductase, 5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID, DI(HYDROXYETHYL)ETHER, ...
Authors:Yu, H.Y, Senda, M, Senda, T.
Deposit date:2022-04-21
Release date:2023-04-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structural of methylenetetrahydrofolate reductase from Sphingobium sp. SYK-6
To Be Published
7XG9
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BU of 7xg9 by Molmil
Crystal structural of methylenetetrahydrofolate reductase from Sphingobium sp. SYK-6
Descriptor: 5,10-methylenetetrahydrofolate reductase, DI(HYDROXYETHYL)ETHER, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Yu, H.Y, Senda, M, Senda, T.
Deposit date:2022-04-04
Release date:2023-04-12
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structural of methylenetetrahydrofolate reductase from Sphingobium sp. SYK-6
To Be Published

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