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PDB: 173 results

2NNF
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BU of 2nnf by Molmil
Structure of the sulfur carrier protein SoxY from Chlorobium limicola f thiosulfatophilum
Descriptor: PHOSPHATE ION, Sulfur covalently-binding protein
Authors:Stout, J, Van Driessche, G, Savvides, S.N, Van Beeumen, J.
Deposit date:2006-10-24
Release date:2007-03-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:X-ray crystallographic analysis of the sulfur carrier protein SoxY from Chlorobium limicola f. thiosulfatophilum reveals a tetrameric structure.
Protein Sci., 16, 2007
2NNC
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Structure of the sulfur carrier protein SoxY from Chlorobium limicola f thiosulfatophilum
Descriptor: CHLORIDE ION, NITROGEN MOLECULE, PHOSPHATE ION, ...
Authors:Stout, J, Van Driessche, G, Savvides, S.N, Van Beeumen, J.
Deposit date:2006-10-24
Release date:2007-03-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:X-ray crystallographic analysis of the sulfur carrier protein SoxY from Chlorobium limicola f. thiosulfatophilum reveals a tetrameric structure.
Protein Sci., 16, 2007
7OX5
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BU of 7ox5 by Molmil
hIL-9:hIL-9Ra complex
Descriptor: Interleukin-9, Interleukin-9 receptor, SULFATE ION
Authors:De Vos, T, Savvides, S.N.
Deposit date:2021-06-22
Release date:2022-12-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Structural basis for the mechanism and antagonism of receptor signaling mediated by Interleukin-9 (IL-9)
Biorxiv, 2022
7OX2
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Fab 6E2: hIL-9 complex
Descriptor: Heavy chain (Fab 6E2), Interleukin-9, Light chain (Fab 6E2), ...
Authors:De Vos, T, Savvides, S.N.
Deposit date:2021-06-22
Release date:2022-12-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.34 Å)
Cite:Structural basis for the mechanism and antagonism of receptor signaling mediated by Interleukin-9 (IL-9)
Biorxiv, 2022
7OX4
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BU of 7ox4 by Molmil
Mouse interleukin-9 in complex with Fab 35D8.
Descriptor: ACETATE ION, Heavy chain (Fab 35D8), Interleukin-9, ...
Authors:De Vos, T, Savvides, S.N.
Deposit date:2021-06-22
Release date:2022-12-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for the mechanism and antagonism of receptor signaling mediated by Interleukin-9 (IL-9)
Biorxiv, 2022
7OX1
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Fab 7D6: hIL-9 complex
Descriptor: Heavy chain (Fab 7D6), Interleukin-9, Light chain (Fab 7D6)
Authors:De Vos, T, Savvides, S.N.
Deposit date:2021-06-22
Release date:2022-12-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structural basis for the mechanism and antagonism of receptor signaling mediated by Interleukin-9 (IL-9)
Biorxiv, 2022
1ZZH
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BU of 1zzh by Molmil
Structure of the fully oxidized di-heme cytochrome c peroxidase from R. capsulatus
Descriptor: CALCIUM ION, HEME C, ZINC ION, ...
Authors:De Smet, L, Savvides, S.N, Van Horen, E, Pettigrew, G, Van Beeumen, J.J.
Deposit date:2005-06-14
Release date:2005-11-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and mutagenesis studies on the cytochrome c peroxidase from Rhodobacter capsulatus provide new insights into structure-function relationships of bacterial di-heme peroxidases
J.Biol.Chem., 281, 2006
7OX3
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BU of 7ox3 by Molmil
Fab 6D3: hIL-9 complex
Descriptor: Heavy chain (Fab 6D3), Interleukin-9, Light chain (Fab 6D3), ...
Authors:De Vos, T, Savvides, S.N.
Deposit date:2021-06-22
Release date:2022-12-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for the mechanism and antagonism of receptor signaling mediated by Interleukin-9 (IL-9)
Biorxiv, 2022
1ONF
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BU of 1onf by Molmil
Crystal structure of Plasmodium falciparum Glutathione reductase
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Glutathione reductase
Authors:Sarma, G.N, Savvides, S.N, Becker, K, Schirmer, M, Schirmer, R.H, Karplus, P.A.
Deposit date:2003-02-27
Release date:2003-05-06
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Glutathione reductase of the malarial parasite Plasmodium falciparum: Crystal structure and inhibitor development
J.Mol.Biol., 328, 2003
5K1Q
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BU of 5k1q by Molmil
Crystal structure of oxidized Shewanella Yellow Enzyme 4 (SYE4) in complex with p-methylphenol
Descriptor: FLAVIN MONONUCLEOTIDE, NAD(P)H:flavin oxidoreductase Sye4, P-CRESOL
Authors:Elegheert, J, Brige, A, Savvides, S.N.
Deposit date:2016-05-18
Release date:2017-06-07
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural dissection of Shewanella oneidensis old yellow enzyme 4 bound to a Meisenheimer complex and (nitro)phenolic ligands.
FEBS Lett., 591, 2017
5K1M
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BU of 5k1m by Molmil
Crystal structure of oxidized Shewanella Yellow Enzyme 4 (SYE4) in complex with p-methoxyphenol
Descriptor: 4-methoxyphenol, FLAVIN MONONUCLEOTIDE, NAD(P)H:flavin oxidoreductase Sye4
Authors:Elegheert, J, Brige, A, Savvides, S.N.
Deposit date:2016-05-18
Release date:2017-06-07
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural dissection of Shewanella oneidensis old yellow enzyme 4 bound to a Meisenheimer complex and (nitro)phenolic ligands.
FEBS Lett., 591, 2017
5K1W
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BU of 5k1w by Molmil
Crystal structure of oxidized Shewanella Yellow Enzyme 4 (SYE4) in complex with trinitrophenol
Descriptor: FLAVIN MONONUCLEOTIDE, NAD(P)H:flavin oxidoreductase Sye4, Octadecane, ...
Authors:Elegheert, J, Brige, A, Savvides, S.N.
Deposit date:2016-05-18
Release date:2017-06-07
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural dissection of Shewanella oneidensis old yellow enzyme 4 bound to a Meisenheimer complex and (nitro)phenolic ligands.
FEBS Lett., 591, 2017
5K0R
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BU of 5k0r by Molmil
Crystal structure of reduced Shewanella Yellow Enzyme 4 (SYE4)
Descriptor: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL, NAD(P)H:flavin oxidoreductase Sye4, Octadecane
Authors:Elegheert, J, Brige, A, Savvides, S.N.
Deposit date:2016-05-17
Release date:2017-06-07
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural dissection of Shewanella oneidensis old yellow enzyme 4 bound to a Meisenheimer complex and (nitro)phenolic ligands.
FEBS Lett., 591, 2017
5K1U
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BU of 5k1u by Molmil
Crystal structure of reduced Shewanella Yellow Enzyme 4 (SYE4) in complex with the hydride Meisenheimer complex of trinitrophenol
Descriptor: FLAVIN MONONUCLEOTIDE, NAD(P)H:flavin oxidoreductase Sye4, PICRIC ACID
Authors:Elegheert, J, Brige, A, Savvides, S.N.
Deposit date:2016-05-18
Release date:2017-06-07
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.551 Å)
Cite:Structural dissection of Shewanella oneidensis old yellow enzyme 4 bound to a Meisenheimer complex and (nitro)phenolic ligands.
FEBS Lett., 591, 2017
8AV2
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BU of 8av2 by Molmil
Crystal structure for the FnIII module of mouse LEP-R in complex with the anti-LEP-R nanobody VHH-4.80
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Leptin receptor, SULFATE ION, ...
Authors:Verstraete, K, Savvides, S.N, Verschueren, K.G, Tsirigotaki, A.
Deposit date:2022-08-26
Release date:2023-04-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Mechanism of receptor assembly via the pleiotropic adipokine Leptin.
Nat.Struct.Mol.Biol., 30, 2023
3DK8
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BU of 3dk8 by Molmil
Catalytic cycle of human glutathione reductase near 1 A resolution
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLUTATHIONE, GLYCEROL, ...
Authors:Berkholz, D.S, Faber, H.R, Savvides, S.N, Karplus, P.A.
Deposit date:2008-06-24
Release date:2008-08-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Catalytic cycle of human glutathione reductase near 1 A resolution.
J.Mol.Biol., 382, 2008
3DK9
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BU of 3dk9 by Molmil
Catalytic cycle of human glutathione reductase near 1 A resolution
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Glutathione reductase, SULFATE ION
Authors:Berkholz, D.S, Faber, H.R, Savvides, S.N, Karplus, P.A.
Deposit date:2008-06-24
Release date:2008-08-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Catalytic cycle of human glutathione reductase near 1 A resolution.
J.Mol.Biol., 382, 2008
3DJJ
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BU of 3djj by Molmil
Catalytic cycle of human glutathione reductase near 1 A resolution
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, Glutathione reductase, ...
Authors:Berkholz, D.S, Faber, H.R, Savvides, S.N, Karplus, P.A.
Deposit date:2008-06-23
Release date:2008-08-05
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Catalytic cycle of human glutathione reductase near 1 A resolution.
J.Mol.Biol., 382, 2008
3DK4
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BU of 3dk4 by Molmil
Catalytic cycle of human glutathione reductase near 1 A resolution
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLUTATHIONE, Glutathione reductase, ...
Authors:Berkholz, D.S, Faber, H.R, Savvides, S.N, Karplus, P.A.
Deposit date:2008-06-24
Release date:2008-08-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Catalytic cycle of human glutathione reductase near 1 A resolution.
J.Mol.Biol., 382, 2008
7PNN
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BU of 7pnn by Molmil
mVenus released from fusion protein.
Descriptor: CHLORIDE ION, mVenus
Authors:Bloch, Y, Savvides, S.N.
Deposit date:2021-09-07
Release date:2021-11-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:mVenus released from fusion protein.
To Be Published
7NX2
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BU of 7nx2 by Molmil
Unbound antigen-binding fragment (FAb) 324
Descriptor: FAb 324 Heavy Chain, FAb 324 Light Chain, SULFATE ION
Authors:De Munck, S, Savvides, S.N.
Deposit date:2021-03-17
Release date:2021-10-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Structural basis of cytokine-mediated activation of ALK family receptors.
Nature, 600, 2021
2ES4
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BU of 2es4 by Molmil
Crystal structure of the Burkholderia glumae lipase-specific foldase in complex with its cognate lipase
Descriptor: CALCIUM ION, IODIDE ION, Lipase, ...
Authors:Pauwels, K, Wyns, L, Tommassen, J, Savvides, S.N, Van Gelder, P.
Deposit date:2005-10-25
Release date:2006-03-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of a membrane-based steric chaperone in complex with its lipase substrate.
Nat.Struct.Mol.Biol., 13, 2006
2B4F
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BU of 2b4f by Molmil
Structure Of A Cold-Adapted Family 8 Xylanase in complex with substrate
Descriptor: beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose, endo-1,4-beta-xylanase
Authors:De Vos, D, Collins, T, Savvides, S.N, Feller, G, Van Beeumen, J.J.
Deposit date:2005-09-23
Release date:2006-09-05
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Oligosaccharide binding in family 8 glycosidases: crystal structures of active-site mutants of the beta-1,4-xylanase pXyl from Pseudoaltermonas haloplanktis TAH3a in complex with substrate and product.
Biochemistry, 45, 2006
5N7L
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Crystal structure of the periplasmic domain of XcpY, tI crystal form.
Descriptor: BROMIDE ION, GLUTAMIC ACID, Type II secretion system protein L
Authors:Fulara, A, Savvides, S.N.
Deposit date:2017-02-20
Release date:2018-03-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:Structure and oligomerization of the periplasmic domain of GspL from the type II secretion system of Pseudomonas aeruginosa.
Sci Rep, 8, 2018
4NN6
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BU of 4nn6 by Molmil
Cytokine receptor complex - Crystal form 1B
Descriptor: Cytokine receptor-like factor 2, Interleukin-7 receptor subunit alpha, Thymic stromal lymphopoietin
Authors:Verstraete, K, van Schie, L, Savvides, S.N.
Deposit date:2013-11-16
Release date:2014-03-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.545 Å)
Cite:Structural basis of the proinflammatory signaling complex mediated by TSLP.
Nat.Struct.Mol.Biol., 21, 2014

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