5CX2
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![BU of 5cx2 by Molmil](/molmil-images/mine/5cx2) | Structure of coiled coil domain of Leishmania donovani coronin | Descriptor: | 1,2-ETHANEDIOL, Coronin, SULFATE ION | Authors: | Nayak, A.R, Karade, S.S, Srivastava, V.K, Pratap, J.V. | Deposit date: | 2015-07-28 | Release date: | 2016-07-27 | Method: | X-RAY DIFFRACTION (2.21 Å) | Cite: | Structure of Leishmania donovani coronin coiled coil domain reveals an antiparallel 4 helix bundle with inherent asymmetry J.Struct.Biol., 195, 2016
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7K0T
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![BU of 7k0t by Molmil](/molmil-images/mine/7k0t) | |
8T7E
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![BU of 8t7e by Molmil](/molmil-images/mine/8t7e) | Cryo-EM structure of the Backtracking Initiation Complex (VII) of Human Mitochondrial DNA Polymerase Gamma | Descriptor: | DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ... | Authors: | Nayak, A.R, Buchel, G, Herbine, K.H, Sarfallah, A, Sokolova, V.O, Zamudio-Ochoa, A, Temiakov, D. | Deposit date: | 2023-06-20 | Release date: | 2024-01-10 | Method: | ELECTRON MICROSCOPY (3.08 Å) | Cite: | Structural basis for DNA proofreading. Nat Commun, 14, 2023
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6C3R
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![BU of 6c3r by Molmil](/molmil-images/mine/6c3r) | |
7K0S
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![BU of 7k0s by Molmil](/molmil-images/mine/7k0s) | |
7TDG
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![BU of 7tdg by Molmil](/molmil-images/mine/7tdg) | |
7TDK
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![BU of 7tdk by Molmil](/molmil-images/mine/7tdk) | Rabbit RyR1 with AMP-PCP and high Ca2+ embedded in nanodisc in closed-inactivated conformation class 3 (Dataset-A) | Descriptor: | CALCIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, Ryanodine receptor 1,Ryanodine receptor 1,RyR1, ... | Authors: | Nayak, A.R, Samso, M. | Deposit date: | 2021-12-31 | Release date: | 2022-03-09 | Last modified: | 2022-03-16 | Method: | ELECTRON MICROSCOPY (3.8 Å) | Cite: | Ca 2+ -inactivation of the mammalian ryanodine receptor type 1 in a lipidic environment revealed by cryo-EM. Elife, 11, 2022
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7TDH
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![BU of 7tdh by Molmil](/molmil-images/mine/7tdh) | Rabbit RyR1 with AMP-PCP and high Ca2+ embedded in nanodisc in open conformation | Descriptor: | CALCIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, Ryanodine receptor 1,Ryanodine receptor 1,RyR1, ... | Authors: | Nayak, A.R, Samso, M. | Deposit date: | 2021-12-31 | Release date: | 2022-03-09 | Last modified: | 2024-02-28 | Method: | ELECTRON MICROSCOPY (4 Å) | Cite: | Ca 2+ -inactivation of the mammalian ryanodine receptor type 1 in a lipidic environment revealed by cryo-EM. Elife, 11, 2022
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7TDI
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![BU of 7tdi by Molmil](/molmil-images/mine/7tdi) | Rabbit RyR1 with AMP-PCP and high Ca2+ embedded in nanodisc in closed-inactivated conformation class 2 (Dataset-A) | Descriptor: | CALCIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, Ryanodine receptor 1,Ryanodine receptor 1,RyR1, ... | Authors: | Nayak, A.R, Samso, M. | Deposit date: | 2021-12-31 | Release date: | 2022-03-09 | Last modified: | 2022-03-16 | Method: | ELECTRON MICROSCOPY (3.3 Å) | Cite: | Ca 2+ -inactivation of the mammalian ryanodine receptor type 1 in a lipidic environment revealed by cryo-EM. Elife, 11, 2022
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7TDJ
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![BU of 7tdj by Molmil](/molmil-images/mine/7tdj) | Rabbit RyR1 with AMP-PCP and high Ca2+ embedded in nanodisc in closed-inactivated conformation class 1(Dataset-A) | Descriptor: | CALCIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, Ryanodine receptor 1,Ryanodine receptor 1,RyR1, ... | Authors: | Nayak, A.R, Samso, M. | Deposit date: | 2021-12-31 | Release date: | 2022-03-09 | Last modified: | 2022-03-16 | Method: | ELECTRON MICROSCOPY (3.7 Å) | Cite: | Ca 2+ -inactivation of the mammalian ryanodine receptor type 1 in a lipidic environment revealed by cryo-EM. Elife, 11, 2022
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8DZE
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![BU of 8dze by Molmil](/molmil-images/mine/8dze) | Cryo-EM structure of bundle-forming pilus extension ATPase from E. coli in the presence of AMP-PNP (class-1) | Descriptor: | BfpD, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ZINC ION | Authors: | Nayak, A.R, Zhao, J, Donnenberg, M.S, Samso, M. | Deposit date: | 2022-08-07 | Release date: | 2022-10-26 | Last modified: | 2024-06-12 | Method: | ELECTRON MICROSCOPY (2.99 Å) | Cite: | Cryo-EM Structure of the Type IV Pilus Extension ATPase from Enteropathogenic Escherichia coli. Mbio, 13, 2022
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8DZG
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![BU of 8dzg by Molmil](/molmil-images/mine/8dzg) | Cryo-EM structure of bundle-forming pilus extension ATPase from E.coli in the presence of ADP | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, BfpD, MAGNESIUM ION, ... | Authors: | Nayak, A.R, Zhao, J, Donnenberg, M.S, Samso, M. | Deposit date: | 2022-08-07 | Release date: | 2022-10-26 | Last modified: | 2024-06-12 | Method: | ELECTRON MICROSCOPY (3.1 Å) | Cite: | Cryo-EM Structure of the Type IV Pilus Extension ATPase from Enteropathogenic Escherichia coli. Mbio, 13, 2022
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8DZF
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![BU of 8dzf by Molmil](/molmil-images/mine/8dzf) | Cryo-EM structure of bundle-forming pilus extension ATPase from E.coli in the presence of AMP-PNP (class-2) | Descriptor: | BfpD, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ZINC ION | Authors: | Nayak, A.R, Zhao, J, Donnenberg, M.S, Samso, M. | Deposit date: | 2022-08-07 | Release date: | 2022-10-26 | Last modified: | 2024-06-12 | Method: | ELECTRON MICROSCOPY (3.69 Å) | Cite: | Cryo-EM Structure of the Type IV Pilus Extension ATPase from Enteropathogenic Escherichia coli. Mbio, 13, 2022
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7UMZ
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![BU of 7umz by Molmil](/molmil-images/mine/7umz) | |
8G5I
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![BU of 8g5i by Molmil](/molmil-images/mine/8g5i) | Cryo-EM structure of the Mismatch Sensing Complex (I) of Human Mitochondrial DNA Polymerase Gamma | Descriptor: | DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ... | Authors: | Nayak, A.R, Buchel, G, Herbine, K.H, Sarfallah, A, Sokolova, V.O, Zamudio-Ochoa, A, Temiakov, D. | Deposit date: | 2023-02-13 | Release date: | 2024-01-10 | Method: | ELECTRON MICROSCOPY (2.75 Å) | Cite: | Structural basis for DNA proofreading. Nat Commun, 14, 2023
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8G5K
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![BU of 8g5k by Molmil](/molmil-images/mine/8g5k) | Cryo-EM structure of the Wedge Alignment Complex (VIII) of Human Mitochondrial DNA Polymerase Gamma | Descriptor: | DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ... | Authors: | Nayak, A.R, Buchel, G, Herbine, K.H, Sarfallah, A, Sokolova, V.O, Zamudio-Ochoa, A, Temiakov, D. | Deposit date: | 2023-02-13 | Release date: | 2024-01-10 | Method: | ELECTRON MICROSCOPY (2.9 Å) | Cite: | Structural basis for DNA proofreading. Nat Commun, 14, 2023
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8G5J
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![BU of 8g5j by Molmil](/molmil-images/mine/8g5j) | Cryo-EM structure of the Mismatch Uncoupling Complex (II) of Human Mitochondrial DNA Polymerase Gamma | Descriptor: | DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ... | Authors: | Nayak, A.R, Buchel, G, Herbine, K.H, Sarfallah, A, Sokolova, V.O, Zamudio-Ochoa, A, Temiakov, D. | Deposit date: | 2023-02-13 | Release date: | 2024-01-10 | Method: | ELECTRON MICROSCOPY (2.63 Å) | Cite: | Structural basis for DNA proofreading. Nat Commun, 14, 2023
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8G5L
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![BU of 8g5l by Molmil](/molmil-images/mine/8g5l) | Cryo-EM structure of the Primer Separation Complex (IX) of Human Mitochondrial DNA Polymerase Gamma | Descriptor: | DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ... | Authors: | Nayak, A.R, Buchel, G, Herbine, K.H, Sarfallah, A, Sokolova, V.O, Zamudio-Ochoa, A, Temiakov, D. | Deposit date: | 2023-02-13 | Release date: | 2024-01-10 | Method: | ELECTRON MICROSCOPY (3 Å) | Cite: | Structural basis for DNA proofreading. Nat Commun, 14, 2023
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8G5O
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![BU of 8g5o by Molmil](/molmil-images/mine/8g5o) | Cryo-EM structure of the Guide loop Engagement Complex (IV) of Human Mitochondrial DNA Polymerase Gamma | Descriptor: | DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ... | Authors: | Nayak, A.R, Buchel, G, Herbine, K.H, Sarfallah, A, Sokolova, V.O, Zamudio-Ochoa, A, Temiakov, D. | Deposit date: | 2023-02-13 | Release date: | 2024-01-10 | Method: | ELECTRON MICROSCOPY (2.61 Å) | Cite: | Structural basis for DNA proofreading. Nat Commun, 14, 2023
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8G5M
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![BU of 8g5m by Molmil](/molmil-images/mine/8g5m) | Cryo-EM structure of the Mismatch Locking Complex (III) of Human Mitochondrial DNA Polymerase Gamma | Descriptor: | DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ... | Authors: | Nayak, A.R, Buchel, G, Herbine, K.H, Sarfallah, A, Sokolova, V.O, Zamudio-Ochoa, A, Temiakov, D. | Deposit date: | 2023-02-13 | Release date: | 2024-01-10 | Method: | ELECTRON MICROSCOPY (2.58 Å) | Cite: | Structural basis for DNA proofreading. Nat Commun, 14, 2023
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8G5N
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![BU of 8g5n by Molmil](/molmil-images/mine/8g5n) | Cryo-EM structure of the Guide loop Engagement Complex (VI) of Human Mitochondrial DNA Polymerase Gamma | Descriptor: | DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ... | Authors: | Nayak, A.R, Buchel, G, Herbine, K.H, Sarfallah, A, Sokolova, V.O, Zamudio-Ochoa, A, Temiakov, D. | Deposit date: | 2023-02-13 | Release date: | 2024-01-10 | Method: | ELECTRON MICROSCOPY (2.73 Å) | Cite: | Structural basis for DNA proofreading. Nat Commun, 14, 2023
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8G5P
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![BU of 8g5p by Molmil](/molmil-images/mine/8g5p) | Cryo-EM structure of the Guide loop Engagement Complex (V) of Human Mitochondrial DNA Polymerase Gamma | Descriptor: | DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ... | Authors: | Nayak, A.R, Buchel, G, Herbine, K.H, Sarfallah, A, Sokolova, V.O, Zamudio-Ochoa, A, Temiakov, D. | Deposit date: | 2023-02-13 | Release date: | 2024-01-10 | Method: | ELECTRON MICROSCOPY (2.78 Å) | Cite: | Structural basis for DNA proofreading. Nat Commun, 14, 2023
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6QEC
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![BU of 6qec by Molmil](/molmil-images/mine/6qec) | DNA binding domain of LUX ARRYTHMO in complex with DNA | Descriptor: | DNA (5'-D(*AP*TP*TP*CP*GP*AP*AP*TP*AP*T*TP*AP*TP*AP*TP*TP*CP*GP*AP*A)-3'), GLYCEROL, Transcription factor LUX | Authors: | Zubieta, C, Nayak, A. | Deposit date: | 2019-01-07 | Release date: | 2020-02-05 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Molecular mechanisms of Evening Complex activity inArabidopsis. Proc.Natl.Acad.Sci.USA, 117, 2020
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6WOV
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![BU of 6wov by Molmil](/molmil-images/mine/6wov) | Cryo-EM structure of recombinant mouse Ryanodine Receptor type 2 wild type in complex with FKBP12.6 | Descriptor: | Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 2, ZINC ION | Authors: | Iyer, K.A, Hu, Y, Nayak, A.R, Kurebayashi, N, Murayama, T, Samso, M. | Deposit date: | 2020-04-25 | Release date: | 2020-08-05 | Last modified: | 2024-05-29 | Method: | ELECTRON MICROSCOPY (5.1 Å) | Cite: | Structural mechanism of two gain-of-function cardiac and skeletal RyR mutations at an equivalent site by cryo-EM. Sci Adv, 6, 2020
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7C4O
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![BU of 7c4o by Molmil](/molmil-images/mine/7c4o) | Solution structure of the Orange domain from human protein HES1 | Descriptor: | Transcription factor HES-1 | Authors: | Fan, J.S, Nayak, A, Swaminathan, K. | Deposit date: | 2020-05-18 | Release date: | 2021-05-19 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Induction of Transcriptional Inhibitor Hairy and Enhancer of Split Homolog-1 and the Related Repression of Tumor-Suppressor Thioredoxin-Interacting Protein Are Important Components of Cell-Transformation Program Imposed by Oncogenic Kinase Nucleophosmin-Anaplastic Lymphoma Kinase. Am J Pathol, 2022
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