1J3A
| Crystal structure of ribosomal protein L13 from Pyrococcus horikoshii | Descriptor: | 50S ribosomal protein L13P | Authors: | Nakashima, T, Tanaka, M, Kazama, T, Kawamura, S, Kimura, M, Yao, M, Tanaka, I. | Deposit date: | 2003-01-21 | Release date: | 2003-02-04 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Crystal structure of ribosomal protein L13 from hyperthermophilic archaeon Pyrococcus horikoshii To be Published
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1IQ4
| 5S-RRNA BINDING RIBOSOMAL PROTEIN L5 FROM BACILLUS STEAROTHERMOPHILUS | Descriptor: | 50S RIBOSOMAL PROTEIN L5 | Authors: | Nakashima, T, Yao, M, Kawamura, S, Iwasaki, K, Kimura, M, Tanaka, I. | Deposit date: | 2001-06-13 | Release date: | 2001-06-27 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Ribosomal protein L5 has a highly twisted concave surface and flexible arms responsible for rRNA binding. RNA, 7, 2001
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2Z41
| Crystal Structure Analysis of the Ski2-type RNA helicase | Descriptor: | MAGNESIUM ION, putative ski2-type helicase | Authors: | Nakashima, T, Zhang, X, Kakuta, Y, Yao, M, Tanaka, I, Kimura, M. | Deposit date: | 2007-06-12 | Release date: | 2008-04-08 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (3.51 Å) | Cite: | Crystal structure of an archaeal Ski2p-like protein from Pyrococcus horikoshii OT3 Protein Sci., 17, 2008
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3LEU
| HIGH RESOLUTION 1H NMR STUDY OF LEUCOCIN A IN DODECYLPHOSPHOCHOLINE MICELLES, 19 STRUCTURES (1:40 RATIO OF LEUCOCIN A:DPC) (0.1% TFA) | Descriptor: | LEUCOCIN A | Authors: | Gallagher, N.L.F, Sailer, M, Niemczura, W.P, Nakashima, T.T, Stiles, M.E, Vederas, J.C. | Deposit date: | 1997-05-20 | Release date: | 1997-11-26 | Last modified: | 2022-03-16 | Method: | SOLUTION NMR | Cite: | Three-dimensional structure of leucocin A in trifluoroethanol and dodecylphosphocholine micelles: spatial location of residues critical for biological activity in type IIa bacteriocins from lactic acid bacteria. Biochemistry, 36, 1997
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1WNU
| Structure of Archaeal Trans-Editing Protein AlaX in complex with L-serine | Descriptor: | SERINE, ZINC ION, alanyl-tRNA synthetase | Authors: | Sokabe, M, Okada, A, Nakashima, T, Yao, M, Tanaka, I. | Deposit date: | 2004-08-09 | Release date: | 2005-07-26 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Molecular basis of alanine discrimination in editing site Proc.Natl.Acad.Sci.Usa, 102, 2005
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1RL2
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2LEU
| HIGH RESOLUTION 1H NMR STUDY OF LEUCOCIN A IN 90% AQUEOUS TRIFLUOROETHANOL (TFE) (0.1% TFA), 18 STRUCTURES | Descriptor: | LEUCOCIN A | Authors: | Gallagher, N.L.F, Sailer, M, Niemczura, W.P, Nakashima, T.T, Stiles, M.E, Vederas, J.C. | Deposit date: | 1997-05-20 | Release date: | 1997-11-26 | Last modified: | 2022-03-16 | Method: | SOLUTION NMR | Cite: | Three-dimensional structure of leucocin A in trifluoroethanol and dodecylphosphocholine micelles: spatial location of residues critical for biological activity in type IIa bacteriocins from lactic acid bacteria. Biochemistry, 36, 1997
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2CZV
| Crystal structure of archeal RNase P protein ph1481p in complex with ph1877p | Descriptor: | ACETIC ACID, Ribonuclease P protein component 2, Ribonuclease P protein component 3, ... | Authors: | Kawano, S, Kakuta, Y, Nakashima, T, Tanaka, I, Kimura, M. | Deposit date: | 2005-07-19 | Release date: | 2006-06-27 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure of protein Ph1481p in complex with protein Ph1877p of archaeal RNase P from Pyrococcus horikoshii OT3: implication of dimer formation of the holoenzyme J.Mol.Biol., 357, 2006
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1WXO
| Structure of Archaeal Trans-Editing Protein AlaX in complex with zinc | Descriptor: | ZINC ION, alanyl-tRNA synthetase | Authors: | Sokabe, M, Okada, A, Nakashima, T, Yao, M, Tanaka, I. | Deposit date: | 2005-01-27 | Release date: | 2005-07-26 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.88 Å) | Cite: | Molecular basis of alanine discrimination in editing site Proc.Natl.Acad.Sci.Usa, 102, 2005
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2Z7C
| Crystal structure of chromatin protein alba from hyperthermophilic archaeon pyrococcus horikoshii | Descriptor: | ARGININE, DNA/RNA-binding protein Alba | Authors: | Hada, K, Nakashima, T, Osawa, T, Shimada, H, Kakuta, Y, Kimura, M. | Deposit date: | 2007-08-17 | Release date: | 2008-08-05 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Crystal structure and functional analysis of an archaeal chromatin protein Alba from the hyperthermophilic archaeon Pyrococcus horikoshii OT3. Biosci.Biotechnol.Biochem., 72, 2008
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3WYZ
| On archaeal homologs of the human RNase P protein Rpp30 in the hyperthermophilic archaeon Thermococcus kodakarensis | Descriptor: | GLYCEROL, Ribonuclease P protein component 3 | Authors: | Suematsu, K, Ueda, T, Nakashima, T, Kakuta, Y, Kimura, M. | Deposit date: | 2014-09-11 | Release date: | 2015-09-16 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.21 Å) | Cite: | On archaeal homologs of the human RNase P proteins Pop5 and Rpp30 in the hyperthermophilic archaeon Thermococcus kodakarensis. Biosci.Biotechnol.Biochem., 79, 2015
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3WZ0
| On archaeal homologs of the human RNase P proteins Pop5 and Rpp30 in the hyperthermophilic archaeon Thermococcus kodakarensis | Descriptor: | Ribonuclease P protein component 2, Ribonuclease P protein component 3 | Authors: | Suematsu, K, Ueda, T, Nakashima, T, Kakuta, Y, Kimura, M. | Deposit date: | 2014-09-11 | Release date: | 2015-09-16 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.79 Å) | Cite: | On archaeal homologs of the human RNase P proteins Pop5 and Rpp30 in the hyperthermophilic archaeon Thermococcus kodakarensis. Biosci.Biotechnol.Biochem., 79, 2015
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3AY8
| Glutathione S-transferase unclassified 2 from Bombyx mori | Descriptor: | GLYCEROL, Glutathione S-transferase | Authors: | Kakuta, Y, Usuda, K, Nakashima, T, Kimura, M, Aso, Y, Yamamoto, K. | Deposit date: | 2011-05-02 | Release date: | 2011-09-07 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Crystallographic survey of active sites of an unclassified glutathione transferase from Bombyx mori Biochim.Biophys.Acta, 1810, 2011
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