5TWB
| Oxidoreductase IruO in the reduced form | Descriptor: | FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin--NADP reductase, GLYCEROL | Authors: | Kobylarz, M.J, Heieis, G.A, Loutet, S.A, Murphy, M.E.P. | Deposit date: | 2016-11-12 | Release date: | 2017-10-04 | Last modified: | 2024-03-06 | Method: | X-RAY DIFFRACTION (1.822 Å) | Cite: | Iron Uptake Oxidoreductase (IruO) Uses a Flavin Adenine Dinucleotide Semiquinone Intermediate for Iron-Siderophore Reduction. ACS Chem. Biol., 12, 2017
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1ZDS
| Crystal Structure of Met150Gly AfNiR with Acetamide Bound | Descriptor: | ACETAMIDE, COPPER (II) ION, Copper-containing nitrite reductase | Authors: | Wijma, H.J, MacPherson, I.S, Alexandre, M, Diederix, R.E.M, Canters, G.W, Murphy, M.E.P, Verbeet, M.P. | Deposit date: | 2005-04-14 | Release date: | 2006-03-28 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | A rearranging ligand enables allosteric control of catalytic activity in copper-containing nitrite reductase. J.Mol.Biol., 358, 2006
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1ZDQ
| Crystal Structure of Met150Gly AfNiR with Methylsulfanyl Methane Bound | Descriptor: | (METHYLSULFANYL)METHANE, COPPER (II) ION, Copper-containing nitrite reductase | Authors: | Wijma, H.J, MacPherson, I.S, Alexandre, M, Diederix, R.E.M, Canters, G.W, Murphy, M.E.P, Verbeet, M.P. | Deposit date: | 2005-04-14 | Release date: | 2006-03-28 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | A rearranging ligand enables allosteric control of catalytic activity in copper-containing nitrite reductase. J.Mol.Biol., 358, 2006
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5VN5
| Crystal structure of LigY from Sphingobium sp. strain SYK-6 | Descriptor: | 2,2',3-trihydroxy-3'-methoxy-5,5'-dicarboxybiphenyl meta-cleavage compound hydrolase, CHLORIDE ION, ZINC ION | Authors: | Kuatsjah, E, Chan, A.C.K, Kobylarz, M.J, Murphy, M.E.P, Eltis, L.D. | Deposit date: | 2017-04-28 | Release date: | 2017-09-27 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | The bacterialmeta-cleavage hydrolase LigY belongs to the amidohydrolase superfamily, not to the alpha / beta-hydrolase superfamily. J. Biol. Chem., 292, 2017
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5D84
| Staphyloferrin B precursor biosynthetic enzyme SbnA bound to PLP | Descriptor: | MAGNESIUM ION, PYRIDOXAL-5'-PHOSPHATE, Probable siderophore biosynthesis protein SbnA | Authors: | Grigg, J.C, Kobylarz, M.J, Liu, Y, Lee, M.S.F, Heinrichs, D.E, Murphy, M.E.P. | Deposit date: | 2015-08-15 | Release date: | 2016-02-03 | Last modified: | 2020-01-08 | Method: | X-RAY DIFFRACTION (1.45 Å) | Cite: | Deciphering the Substrate Specificity of SbnA, the Enzyme Catalyzing the First Step in Staphyloferrin B Biosynthesis. Biochemistry, 55, 2016
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3EIX
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3E2C
| Escherichia coli Bacterioferritin Mutant E128R/E135R | Descriptor: | 1,2-ETHANEDIOL, Bacterioferritin, PROTOPORPHYRIN IX CONTAINING FE, ... | Authors: | Wong, S.G, Tom-Yew, S.A.L, Lewin, A, Le Brun, N.E, Moore, G.R, Murphy, M.E.P, Mauk, A.G. | Deposit date: | 2008-08-05 | Release date: | 2009-05-12 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Structural and Mechanistic Studies of a Stabilized Subunit Dimer Variant of Escherichia coli Bacterioferritin Identify Residues Required for Core Formation. J.Biol.Chem., 284, 2009
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3EIW
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3H4F
| Met62Leu variant of nitrite reductase from Alcaligenes faeclis | Descriptor: | COPPER (II) ION, Copper-containing nitrite reductase | Authors: | MacPherson, I.S, Rosell, F.I, Scofield, M, Mauk, A.G, Murphy, M.E.P. | Deposit date: | 2009-04-19 | Release date: | 2010-02-02 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Directed evolution of copper nitrite reductase to a chromogenic reductant. Protein Eng.Des.Sel., 23, 2010
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3H56
| Met150Leu/Phe312Cys variant of nitrite reductase from Alcaligenes faecalis | Descriptor: | COPPER (II) ION, Copper-containing nitrite reductase | Authors: | MacPherson, I.S, Rosell, F.I, Scofield, M, Mauk, A.G, Murphy, M.E.P. | Deposit date: | 2009-04-21 | Release date: | 2010-02-02 | Last modified: | 2021-10-13 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Directed evolution of copper nitrite reductase to a chromogenic reductant. Protein Eng.Des.Sel., 23, 2010
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4M54
| The structure of the staphyloferrin B precursor biosynthetic enzyme SbnB bound to N-(1-amino-1-carboxyl-2-ethyl)-glutamic acid and NADH | Descriptor: | 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, CHLORIDE ION, N-[(2S)-2-amino-2-carboxyethyl]-L-glutamic acid, ... | Authors: | Kobylarz, M.J, Murphy, M.E.P. | Deposit date: | 2013-08-07 | Release date: | 2014-07-09 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (2.36 Å) | Cite: | Synthesis of L-2,3-diaminopropionic acid, a siderophore and antibiotic precursor. Chem.Biol., 21, 2014
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4MP8
| Staphyloferrin B precursor biosynthetic enzyme SbnB bound to malonate and NAD+ | Descriptor: | MALONATE ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Putative ornithine cyclodeaminase | Authors: | Grigg, J.C, Kobylarz, M.J, Rai, D.K, Murphy, M.E.P. | Deposit date: | 2013-09-12 | Release date: | 2014-03-05 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | Synthesis of L-2,3-diaminopropionic Acid, a siderophore and antibiotic precursor. Chem.Biol., 21, 2014
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4N7K
| Zinc Substituted Reaction Center of the Rhodobacter sphaeroides | Descriptor: | 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, CARDIOLIPIN, FE (III) ION, ... | Authors: | Hardjasa, A, Murphy, M.E.P. | Deposit date: | 2013-10-15 | Release date: | 2014-02-05 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (2.85 Å) | Cite: | Structural and kinetic properties of Rhodobacter sphaeroides photosynthetic reaction centers containing exclusively Zn-coordinated bacteriochlorophyll as bacteriochlorin cofactors. Biochim.Biophys.Acta, 1837, 2013
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4MP3
| Staphyloferrin B precursor biosynthetic enzyme selenomethionine-labeled SbnB | Descriptor: | GLYCEROL, Putative ornithine cyclodeaminase, SULFATE ION | Authors: | Grigg, J.C, Kobylarz, M.J, Rai, D.K, Murphy, M.E.P. | Deposit date: | 2013-09-12 | Release date: | 2014-03-05 | Last modified: | 2017-11-15 | Method: | X-RAY DIFFRACTION (2.11 Å) | Cite: | Synthesis of L-2,3-diaminopropionic Acid, a siderophore and antibiotic precursor. Chem.Biol., 21, 2014
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4MPD
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4MP6
| Staphyloferrin B precursor biosynthetic enzyme SbnB bound to citrate and NAD+ | Descriptor: | CITRIC ACID, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Putative ornithine cyclodeaminase | Authors: | Grigg, J.C, Kobylarz, M.J, Rai, D.K, Murphy, M.E.P. | Deposit date: | 2013-09-12 | Release date: | 2014-03-05 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Synthesis of L-2,3-diaminopropionic Acid, a siderophore and antibiotic precursor. Chem.Biol., 21, 2014
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4N7L
| Zinc Substituted Reaction Center M(L214H) Variant of Rhodobacter sphaeroides | Descriptor: | 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, CARDIOLIPIN, FE (III) ION, ... | Authors: | Hardjasa, A, Murphy, M.E.P. | Deposit date: | 2013-10-15 | Release date: | 2014-01-22 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (2.85 Å) | Cite: | Structural and kinetic properties of Rhodobacter sphaeroides photosynthetic reaction centers containing exclusively Zn-coordinated bacteriochlorophyll as bacteriochlorin cofactors. Biochim.Biophys.Acta, 1837, 2014
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2PP8
| Formate bound to oxidized wild type AfNiR | Descriptor: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, COPPER (I) ION, ... | Authors: | Tocheva, E.I, Eltis, L.D, Murphy, M.E.P. | Deposit date: | 2007-04-28 | Release date: | 2008-04-01 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Conserved active site residues limit inhibition of a copper-containing nitrite reductase by small molecules. Biochemistry, 47, 2008
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1KBV
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1KBW
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2PPC
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2PPF
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2PP7
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2PPE
| Reduced H145A mutant of AfNiR exposed to NO | Descriptor: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, COPPER (I) ION, ... | Authors: | Tocheva, E.I, Murphy, M.E.P. | Deposit date: | 2007-04-28 | Release date: | 2008-01-15 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Stable copper-nitrosyl formation by nitrite reductase in either oxidation state Biochemistry, 46, 2007
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2PPA
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