2D5H
| Crystal Structure of Recombinant Soybean Proglycinin A3B4 subunit, its Comparison with Mature Glycinin A3B4 subunit, Responsible for Hexamer Assembly | Descriptor: | CARBONATE ION, MAGNESIUM ION, glycinin A3B4 subunit | Authors: | Itoh, T, Adachi, M, Masuda, T, Mikami, B, Utsumi, S. | Deposit date: | 2005-11-01 | Release date: | 2006-11-14 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Conservation and divergence on plant seed 11S globulins based on crystal structures. Biochim.Biophys.Acta, 2010
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2D5F
| Crystal Structure of Recombinant Soybean Proglycinin A3B4 subunit, its Comparison with Mature Glycinin A3B4 subunit, Responsible for Hexamer Assembly | Descriptor: | CARBONATE ION, MAGNESIUM ION, glycinin A3B4 subunit | Authors: | Itoh, T, Adachi, M, Masuda, T, Mikami, B, Utsumi, S. | Deposit date: | 2005-11-01 | Release date: | 2006-11-14 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Conservation and divergence on plant seed 11S globulins based on crystal structures. Biochim.Biophys.Acta, 2010
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2D3I
| Crystal Structure of Aluminum-Bound Ovotransferrin at 2.15 Angstrom Resolution | Descriptor: | ALUMINUM ION, BICARBONATE ION, Ovotransferrin | Authors: | Mizutani, K, Mikami, B, Aibara, S, Hirose, M. | Deposit date: | 2005-09-28 | Release date: | 2005-11-29 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Structure of aluminium-bound ovotransferrin at 2.15 Angstroms resolution. Acta Crystallogr.,Sect.D, 61, 2005
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2E22
| Crystal structure of xanthan lyase in complex with mannose | Descriptor: | Xanthan lyase, alpha-D-mannopyranose | Authors: | Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2006-11-07 | Release date: | 2007-01-30 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | A Structural Factor Responsible for Substrate Recognition by Bacillus sp. GL1 Xanthan Lyase that Acts Specifically on Pyruvated Side Chains of Xanthan Biochemistry, 46, 2007
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2EF8
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2EA7
| Crystal Structure of Adzuki Bean 7S Globulin-1 | Descriptor: | 7S globulin-1, ACETIC ACID, CALCIUM ION | Authors: | Fukuda, T, Mikami, B, Utsumi, S. | Deposit date: | 2007-01-30 | Release date: | 2008-02-05 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Characterization and crystallography of recombinant 7S globulins of Adzuki bean and structure-function relationships with 7S globulins of various crops. J.Agric.Food Chem., 56, 2008
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2EAA
| Crystal Structure of Adzuki Bean 7S Globulin-3 | Descriptor: | 7S globulin-3, ACETIC ACID, CALCIUM ION, ... | Authors: | Fukuda, T, Mikami, B, Utsumi, S. | Deposit date: | 2007-01-31 | Release date: | 2008-02-05 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.25 Å) | Cite: | Characterization and crystallography of recombinant 7S globulins of Adzuki bean and structure-function relationships with 7S globulins of various crops. J.Agric.Food Chem., 56, 2008
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2E9Q
| Recombinant pro-11S globulin of pumpkin | Descriptor: | 11S globulin subunit beta, CHLORIDE ION, PHOSPHATE ION | Authors: | Fukuda, T, Prak, K, Itoh, T, Masuda, T, Maruyama, N, Mikami, B, Utsumi, S. | Deposit date: | 2007-01-26 | Release date: | 2008-02-26 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Conservation and divergence on plant seed 11S globulins based on crystal structures. Biochim.Biophys.Acta, 2010
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2E24
| crystal structure of a mutant (R612A) of xanthan lyase | Descriptor: | DI(HYDROXYETHYL)ETHER, Xanthan lyase | Authors: | Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2006-11-07 | Release date: | 2007-01-30 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | A Structural Factor Responsible for Substrate Recognition by Bacillus sp. GL1 Xanthan Lyase that Acts Specifically on Pyruvated Side Chains of Xanthan Biochemistry, 46, 2007
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2EVX
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2FUZ
| UGL hexagonal crystal structure without glycine and DTT molecules | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, Unsaturated glucuronyl hydrolase | Authors: | Itoh, T, Hashimoto, W, Mikami, B, Murata, K. | Deposit date: | 2006-01-28 | Release date: | 2006-05-30 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Substrate recognition by unsaturated glucuronyl hydrolase from Bacillus sp. GL1 Biochem.Biophys.Res.Commun., 344, 2006
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2FV1
| UGL_D88N/dGlcA-GlcNAc | Descriptor: | 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-3)-2-acetamido-2-deoxy-alpha-D-glucopyranose, Unsaturated glucuronyl hydrolase | Authors: | Itoh, T, Hashimoto, W, Mikami, B, Murata, K. | Deposit date: | 2006-01-28 | Release date: | 2006-05-30 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.73 Å) | Cite: | Substrate recognition by unsaturated glucuronyl hydrolase from Bacillus sp. GL1 Biochem.Biophys.Res.Commun., 344, 2006
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2FV0
| UGL_D88N/dGlcA-Glc-Rha-Glc | Descriptor: | 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-4)-beta-D-glucopyranose-(1-4)-alpha-L-rhamnopyranose-(1-3)-beta-D-glucopyranose, Unsaturated glucuronyl hydrolase | Authors: | Itoh, T, Hashimoto, W, Mikami, B, Murata, K. | Deposit date: | 2006-01-28 | Release date: | 2006-05-30 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.91 Å) | Cite: | Substrate recognition by unsaturated glucuronyl hydrolase from Bacillus sp. GL1 Biochem.Biophys.Res.Commun., 344, 2006
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2GH4
| YteR/D143N/dGalA-Rha | Descriptor: | 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-2)-alpha-L-rhamnopyranose, Putative glycosyl hydrolase yteR | Authors: | Itoh, T, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2006-03-25 | Release date: | 2006-08-29 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structure of unsaturated rhamnogalacturonyl hydrolase complexed with substrate Biochem.Biophys.Res.Commun., 347, 2006
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1UIK
| Crystal structure of soybean beta-conglycinin alpha prime homotrimer | Descriptor: | MAGNESIUM ION, alpha prime subunit of beta-conglycinin | Authors: | Maruyama, Y, Maruyama, N, Mikami, B, Utsumi, S. | Deposit date: | 2003-07-16 | Release date: | 2004-07-16 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structure of the core region of the soybean beta-conglycinin alpha' subunit. Acta Crystallogr.,Sect.D, 60, 2004
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1V3H
| The roles of Glu186 and Glu380 in the catalytic reaction of soybean beta-amylase | Descriptor: | Beta-amylase, SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | Authors: | Kang, Y.N, Adachi, M, Utsumi, S, Mikami, B. | Deposit date: | 2003-11-02 | Release date: | 2004-06-22 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | The Roles of Glu186 and Glu380 in the Catalytic Reaction of Soybean beta-Amylase. J.Mol.Biol., 339, 2004
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1UKP
| Crystal structure of soybean beta-amylase mutant substituted at surface region | Descriptor: | Beta-amylase, SULFATE ION | Authors: | Kang, Y.N, Adachi, M, Mikami, B, Utsumi, S. | Deposit date: | 2003-08-31 | Release date: | 2004-02-10 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Change in the crystal packing of soybean beta-amylase mutants substituted at a few surface amino acid residues Protein Eng., 16, 2003
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1UKO
| Crystal structure of soybean beta-amylase mutant substituted at surface region | Descriptor: | Beta-amylase, SULFATE ION | Authors: | Kang, Y.N, Adachi, M, Mikami, B, Utsumi, S. | Deposit date: | 2003-08-30 | Release date: | 2004-02-10 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Change in the crystal packing of soybean beta-amylase mutants substituted at a few surface amino acid residues Protein Eng., 16, 2003
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1V9Y
| Crystal Structure of the heme PAS sensor domain of Ec DOS (ferric form) | Descriptor: | Heme pas sensor protein, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Kurokawa, H, Lee, D.S, Watanabe, M, Sagami, I, Mikami, B, Raman, C.S, Shimizu, T. | Deposit date: | 2004-02-04 | Release date: | 2004-05-25 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.32 Å) | Cite: | A redox-controlled molecular switch revealed by the crystal structure of a bacterial heme PAS sensor. J.Biol.Chem., 279, 2004
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1V9Z
| Crystal Structure of the heme PAS sensor domain of Ec DOS (Ferrous Form) | Descriptor: | Heme pas sensor protein, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Kurokawa, H, Lee, D.S, Watanabe, M, Sagami, I, Mikami, B, Raman, C.S, Shimizu, T. | Deposit date: | 2004-02-04 | Release date: | 2004-05-25 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | A redox-controlled molecular switch revealed by the crystal structure of a bacterial heme PAS sensor. J.Biol.Chem., 279, 2004
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1VB6
| Crystal Structure of the heme PAS sensor domain of Ec DOS (oxygen-bound form) | Descriptor: | Heme pas sensor protein, OXYGEN MOLECULE, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Kurokawa, H, Watanabe, M, Sagami, I, Mikami, B, Shimizu, T. | Deposit date: | 2004-02-24 | Release date: | 2005-04-19 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.56 Å) | Cite: | Structure of oxygen-bound form of a Heme PAS domain of Ec DOS To be Published
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1VAV
| Crystal structure of alginate lyase PA1167 from Pseudomonas aeruginosa at 2.0 A resolution | Descriptor: | Alginate lyase PA1167 | Authors: | Yamasaki, M, Moriwaki, S, Miyake, O, Hashimoto, W, Murata, K, Mikami, B. | Deposit date: | 2004-02-19 | Release date: | 2004-05-25 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structure and function of a hypothetical Pseudomonas aeruginosa protein PA1167 classified into family PL-7: a novel alginate lyase with a beta-sandwich fold. J.Biol.Chem., 279, 2004
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1V73
| Crystal Structure of Cold-Active Protein-Tyrosine Phosphatase of a Psychrophile Shewanella SP. | Descriptor: | ACETIC ACID, CALCIUM ION, psychrophilic phosphatase I | Authors: | Tsuruta, H, Mikami, B, Aizono, Y. | Deposit date: | 2003-12-09 | Release date: | 2005-03-01 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.82 Å) | Cite: | Crystal Structure of Cold-Active Protein-Tyrosine Phosphatase from a Psychrophile, Shewanella sp J.Biochem.(Tokyo), 137, 2005
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1V3I
| The roles of Glu186 and Glu380 in the catalytic reaction of soybean beta-amylase | Descriptor: | Beta-amylase, SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ... | Authors: | Kang, Y.N, Adachi, M, Utsumi, S, Mikami, B. | Deposit date: | 2003-11-02 | Release date: | 2004-06-22 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | The Roles of Glu186 and Glu380 in the Catalytic Reaction of Soybean beta-Amylase. J.Mol.Biol., 339, 2004
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1VEO
| Crystal Structure Analysis of Y164F/maltose of Bacillus cereus Beta-Amylase at pH 4.6 | Descriptor: | Beta-amylase, CALCIUM ION, alpha-D-glucopyranose, ... | Authors: | Hirata, A, Adachi, M, Utsumi, S, Mikami, B. | Deposit date: | 2004-04-03 | Release date: | 2005-05-24 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.12 Å) | Cite: | Engineering of the pH optimum of Bacillus cereus beta-amylase: conversion of the pH optimum from a bacterial type to a higher-plant type Biochemistry, 43, 2004
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