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PDB: 72 results

4RVY
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BU of 4rvy by Molmil
Serial Time resolved crystallography of Photosystem II using a femtosecond X-ray laser. The S state after two flashes (S3)
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Kupitz, C, Basu, S, Grotjohann, I, Fromme, R, Zatsepin, N, Rendek, K.N, Hunter, M, Shoeman, R.L, White, T.A, Wang, D, James, D, Yang, J.-H, Cobb, D.E, Reeder, B, Sierra, R.G, Liu, H, Barty, A, Aquila, A, Deponte, D, Kirian, R, Bari, S, Bergkamp, J.J, Beyerlein, K, Bogan, M.J, Caleman, C, Chao, T.-C, Conrad, C.E, Davis, K.M, Fleckenstein, H, Galli, L, Hau-Riege, S.P, Kassemeyer, S, Laksmono, H, Liang, M, Lomb, L, Marchesini, S, Martin, A.V, Messerschmidt, M, Milathianaki, D, Nass, K, Ros, A, Roy-Chowdhury, S, Schmidt, K, Seibert, M, Steinbrener, J, Stellato, F, Yan, L, Yoon, C, Moore, T.A, Moore, A.L, Pushkar, Y, Williams, G.J, Boutet, S, Doak, R.B, Weierstall, U, Frank, M, Chapman, H.N, Spence, J.C.H, Fromme, P.
Deposit date:2014-11-29
Release date:2015-11-04
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (5.5 Å)
Cite:Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser.
Nature, 513, 2014
4U39
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Crystal Structure of FtsZ:MciZ Complex from Bacillus subtilis
Descriptor: Cell division factor, Cell division protein FtsZ, PHOSPHATE ION
Authors:Bisson-Filho, A.W, Discola, K.F, Castellen, P, Blasios, V, Martins, A, Sforca, M.L, Garcia, W, Zeri, A.C, Erickson, H.P, Dessen, A, Gueiros-Filho, F.J.
Deposit date:2014-07-19
Release date:2015-03-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.194 Å)
Cite:Crystal Structure of FtsZ:MciZ Complex from Bacillus subtilis
To be Published
1AZ4
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BU of 1az4 by Molmil
ECORV ENDONUCLEASE, UNLIGANDED, FORM B, T93A MUTANT
Descriptor: ECORV ENDONUCLEASE
Authors:Perona, J, Martin, A.
Deposit date:1997-11-24
Release date:1998-05-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Conformational transitions and structural deformability of EcoRV endonuclease revealed by crystallographic analysis.
J.Mol.Biol., 273, 1997
1AZ3
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BU of 1az3 by Molmil
ECORV ENDONUCLEASE, UNLIGANDED, FORM B
Descriptor: ECORV ENDONUCLEASE
Authors:Perona, J, Martin, A.
Deposit date:1997-11-24
Release date:1998-05-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Conformational transitions and structural deformability of EcoRV endonuclease revealed by crystallographic analysis.
J.Mol.Biol., 273, 1997
1AZ0
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BU of 1az0 by Molmil
ECORV ENDONUCLEASE/DNA COMPLEX
Descriptor: CALCIUM ION, DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3'), PROTEIN (TYPE II RESTRICTION ENZYME ECORV)
Authors:Perona, J.J, Martin, A.M.
Deposit date:1997-11-24
Release date:1998-06-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Conformational transitions and structural deformability of EcoRV endonuclease revealed by crystallographic analysis.
J.Mol.Biol., 273, 1997
6XF9
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BU of 6xf9 by Molmil
Crystal structure of KSHV ORF68
Descriptor: Packaging protein UL32, ZINC ION
Authors:Didychuk, A.L, Gates, S.N, Martin, A, Glaunsinger, B.
Deposit date:2020-06-15
Release date:2021-02-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:A pentameric protein ring with novel architecture is required for herpesviral packaging.
Elife, 10, 2021
5W83
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BU of 5w83 by Molmil
Rpn8/Rpn11 dimer complex
Descriptor: 26S proteasome regulatory subunit RPN8, Ubiquitin carboxyl-terminal hydrolase RPN11, ZINC ION
Authors:Dong, K.C, Worden, E.J, Martin, A.
Deposit date:2017-06-21
Release date:2017-09-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.554 Å)
Cite:An AAA Motor-Driven Mechanical Switch in Rpn11 Controls Deubiquitination at the 26S Proteasome.
Mol. Cell, 67, 2017
6XFA
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BU of 6xfa by Molmil
Cryo-EM structure of EBV BFLF1
Descriptor: Packaging protein UL32, ZINC ION
Authors:Didychuk, A.L, Gates, S.N, Martin, A, Glaunsinger, B.
Deposit date:2020-06-15
Release date:2021-02-24
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:A pentameric protein ring with novel architecture is required for herpesviral packaging.
Elife, 10, 2021
1BSU
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BU of 1bsu by Molmil
STRUCTURAL AND ENERGETIC ORIGINS OF INDIRECT READOUT IN SITE-SPECIFIC DNA CLEAVAGE BY A RESTRICTION ENDONUCLEASE
Descriptor: CALCIUM ION, DNA (5'-D(*AP*AP*AP*GP*AP*(5CM)P*IP*TP*CP*TP*T)-3'), DNA (5'-D(P*AP*AP*GP*AP*(5CM)P*IP*TP*CP*TP*T)-3'), ...
Authors:Perona, J.J, Martin, A.M.
Deposit date:1998-08-30
Release date:1998-09-09
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and energetic origins of indirect readout in site-specific DNA cleavage by a restriction endonuclease.
Nat.Struct.Biol., 6, 1999
1BUA
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BU of 1bua by Molmil
STRUCTURAL AND ENERGETIC ORIGINS OF INDIRECT READOUT IN SITE-SPECIFIC DNA CLEAVAGE BY A RESTRICTION ENDONUCLEASE
Descriptor: DNA (5'-D(*AP*AP*AP*GP*AP*CP*IP*TP*CP*TP*T)-3'), ENDONUCLEASE ECORV
Authors:Perona, J.J, Martin, A.M.
Deposit date:1998-09-03
Release date:1998-09-09
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural and energetic origins of indirect readout in site-specific DNA cleavage by a restriction endonuclease.
Nat.Struct.Biol., 6, 1999
5LP4
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BU of 5lp4 by Molmil
Penicillin-Binding Protein (PBP2) from Helicobacter pylori
Descriptor: Penicillin-binding protein 2 (Pbp2), SULFATE ION
Authors:Contreras-Martel, C, Martins, A, Ecobichon, C, Maragno, D.M, Mattei, P.J, El Ghachi, M, Boneca, I.G, Dessen, A.
Deposit date:2016-08-11
Release date:2017-08-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.03 Å)
Cite:Molecular architecture of the PBP2-MreC core bacterial cell wall synthesis complex.
Nat Commun, 8, 2017
5DTY
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BU of 5dty by Molmil
Crystal structure of rsEGFP2 in the non-fluorescent off-state
Descriptor: Green fluorescent protein
Authors:Adam, V, Dos-Santos Martins, A.
Deposit date:2015-09-18
Release date:2016-01-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Rational design of ultrastable and reversibly photoswitchable fluorescent proteins for super-resolution imaging of the bacterial periplasm.
Sci Rep, 6, 2016
5LP5
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BU of 5lp5 by Molmil
Complex between Penicillin-Binding Protein (PBP2) and MreC from Helicobacter pylori
Descriptor: Penicillin-binding protein 2 (Pbp2), Rod shape-determining protein (MreC)
Authors:Contreras-Martel, C, Martins, A, Ecobichon, C, Maragno, D.M, Mattei, P.J, El Ghachi, M, Hicham, S, Hardouin, P, Boneca, I.G, Dessen, A.
Deposit date:2016-08-11
Release date:2017-08-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Molecular architecture of the PBP2-MreC core bacterial cell wall synthesis complex.
Nat Commun, 8, 2017
3LPE
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BU of 3lpe by Molmil
Crystal structure of Spt4/5NGN heterodimer complex from Methanococcus jannaschii
Descriptor: DNA-directed RNA polymerase subunit E'', Putative transcription antitermination protein nusG, ZINC ION
Authors:Hirtreiter, A, Damsma, G.E, Cheung, A.C.M, Klose, D, Grohmann, D, Vojnic, E, Martin, A.C.R, Cramer, P, Werner, F.
Deposit date:2010-02-05
Release date:2010-03-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Spt4/5 stimulates transcription elongation through the RNA polymerase clamp coiled-coil motif.
Nucleic Acids Res., 38, 2010
1VS0
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BU of 1vs0 by Molmil
Crystal Structure of the Ligase Domain from M. tuberculosis LigD at 2.4A
Descriptor: CHLORIDE ION, MAGNESIUM ION, Putative DNA ligase-like protein Rv0938/MT0965, ...
Authors:Akey, D, Martins, A, Aniukwu, J, Glickman, M.S, Shuman, S, Berger, J.M, TB Structural Genomics Consortium (TBSGC)
Deposit date:2006-01-27
Release date:2006-02-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure and Nonhomologous End-joining Function of the Ligase Component of Mycobacterium DNA Ligase D.
J.Biol.Chem., 281, 2006
6I2V
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BU of 6i2v by Molmil
Pilotin from Vibrio vulnificus type 2 secretion system, EpsS.
Descriptor: 1,2-ETHANEDIOL, PENTAETHYLENE GLYCOL, SULFATE ION, ...
Authors:Howard, S.P, Estrozi, L, Bertrand, Q, Contreras-Martel, C, Strozen, T, Job, V, Martins, A, Fenel, D, Schoehn, G, Dessen, A.
Deposit date:2018-11-02
Release date:2019-04-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure and assembly of pilotin-dependent and -independent secretins of the type II secretion system.
Plos Pathog., 15, 2019
1YN9
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BU of 1yn9 by Molmil
Crystal structure of baculovirus RNA 5'-phosphatase complexed with phosphate
Descriptor: PHOSPHATE ION, polynucleotide 5'-phosphatase
Authors:Changela, A, Martins, A, Shuman, S, Mondragon, A.
Deposit date:2005-01-24
Release date:2005-02-22
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of baculovirus RNA triphosphatase complexed with phosphate
J.Biol.Chem., 280, 2005
6EF0
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BU of 6ef0 by Molmil
Yeast 26S proteasome bound to ubiquitinated substrate (1D* motor state)
Descriptor: 26S proteasome regulatory subunit 4 homolog, 26S proteasome regulatory subunit 6A, 26S proteasome regulatory subunit 6B homolog, ...
Authors:de la Pena, A.H, Goodall, E.A, Gates, S.N, Lander, G.C, Martin, A.
Deposit date:2018-08-15
Release date:2018-10-17
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.43 Å)
Cite:Substrate-engaged 26Sproteasome structures reveal mechanisms for ATP-hydrolysis-driven translocation.
Science, 362, 2018
6EF1
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BU of 6ef1 by Molmil
Yeast 26S proteasome bound to ubiquitinated substrate (5D motor state)
Descriptor: 26S proteasome regulatory subunit 4 homolog, 26S proteasome regulatory subunit 6A, 26S proteasome regulatory subunit 6B homolog, ...
Authors:de la Pena, A.H, Goodall, E.A, Gates, S.N, Lander, G.C, Martin, A.
Deposit date:2018-08-15
Release date:2018-10-17
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.73 Å)
Cite:Substrate-engaged 26Sproteasome structures reveal mechanisms for ATP-hydrolysis-driven translocation.
Science, 362, 2018
6EF2
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BU of 6ef2 by Molmil
Yeast 26S proteasome bound to ubiquitinated substrate (5T motor state)
Descriptor: 26S proteasome regulatory subunit 4 homolog, 26S proteasome regulatory subunit 6A, 26S proteasome regulatory subunit 6B homolog, ...
Authors:de la Pena, A.H, Goodall, E.A, Gates, S.N, Lander, G.C, Martin, A.
Deposit date:2018-08-15
Release date:2018-10-17
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.27 Å)
Cite:Substrate-engaged 26Sproteasome structures reveal mechanisms for ATP-hydrolysis-driven translocation.
Science, 362, 2018
6EF3
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BU of 6ef3 by Molmil
Yeast 26S proteasome bound to ubiquitinated substrate (4D motor state)
Descriptor: 26S proteasome regulatory subunit 4 homolog, 26S proteasome regulatory subunit 6A, 26S proteasome regulatory subunit 6B homolog, ...
Authors:de la Pena, A.H, Goodall, E.A, Gates, S.N, Lander, G.C, Martin, A.
Deposit date:2018-08-15
Release date:2018-10-17
Last modified:2020-01-08
Method:ELECTRON MICROSCOPY (4.17 Å)
Cite:Substrate-engaged 26Sproteasome structures reveal mechanisms for ATP-hydrolysis-driven translocation.
Science, 362, 2018
5DTL
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BU of 5dtl by Molmil
Crystal structure of mEos2-A69T fluorescent protein
Descriptor: Green to red photoconvertible GFP-like protein EosFP
Authors:Berardozzi, R, Adam, V, Martins, A, Bourgeois, D.
Deposit date:2015-09-18
Release date:2015-12-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Arginine 66 Controls Dark-State Formation in Green-to-Red Photoconvertible Fluorescent Proteins.
J.Am.Chem.Soc., 138, 2016
1I9S
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BU of 1i9s by Molmil
CRYSTAL STRUCTURE OF THE RNA TRIPHOSPHATASE DOMAIN OF MOUSE MRNA CAPPING ENZYME
Descriptor: CACODYLATE ION, ISOPROPYL ALCOHOL, MAGNESIUM ION, ...
Authors:Changela, A, Ho, C.K, Martins, A, Shuman, S, Mondragon, A.
Deposit date:2001-03-20
Release date:2001-05-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure and mechanism of the RNA triphosphatase component of mammalian mRNA capping enzyme.
EMBO J., 20, 2001
1I9T
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BU of 1i9t by Molmil
CRYSTAL STRUCTURE OF THE OXIDIZED RNA TRIPHOSPHATASE DOMAIN OF MOUSE MRNA CAPPING ENZYME
Descriptor: CACODYLATE ION, ISOPROPYL ALCOHOL, MAGNESIUM ION, ...
Authors:Changela, A, Ho, C.K, Martins, A, Shuman, S, Mondragon, A.
Deposit date:2001-03-20
Release date:2001-05-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure and mechanism of the RNA triphosphatase component of mammalian mRNA capping enzyme.
EMBO J., 20, 2001
5DTX
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Crystal structure of rsEGFP2 in the fluorescent on-state
Descriptor: Green fluorescent protein
Authors:Adam, V, Martins, A.
Deposit date:2015-09-18
Release date:2016-01-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Rational design of ultrastable and reversibly photoswitchable fluorescent proteins for super-resolution imaging of the bacterial periplasm.
Sci Rep, 6, 2016

 

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