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PDB: 68 results

2IPB
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Crystal structure of T159D mutant of S. Typhimurium PhoN protein
Descriptor: Class A nonspecific acid phosphatase PhoN
Authors:Makde, R.D, Kumar, V.
Deposit date:2006-10-12
Release date:2007-03-06
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Structure and Mutational Analysis of the PhoN Protein of Salmonella typhimurium Provide Insight into Mechanistic Details
Biochemistry, 46, 2007
1Z5G
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BU of 1z5g by Molmil
Crystal structure of Salmonella typhimurium AphA protein
Descriptor: AphA protein, MAGNESIUM ION, PHOSPHATE ION
Authors:Makde, R.D, Kumar, V.
Deposit date:2005-03-18
Release date:2006-03-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and mutational analyses reveal the functional role of active-site Lys-154 and Asp-173 of Salmonella typhimurium AphA protein.
Arch.Biochem.Biophys., 464, 2007
1Z5U
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Crystal structure of S. typhimurium AphA complexed with cyclic-AMP
Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, AphA protein, MAGNESIUM ION
Authors:Makde, R.D, Kumar, V.
Deposit date:2005-03-20
Release date:2006-03-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and Function of class-B bacterial non-specific acid phosphatase: functional role of invariant Lys154
To be Published
1Z88
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Crystal structure of Lys154Arg mutant of mature AphA of S. typhimurium
Descriptor: AphA protein, MAGNESIUM ION
Authors:Makde, R.D, Gupta, G.D, Kumar, V.
Deposit date:2005-03-30
Release date:2006-04-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and mutational analyses reveal the functional role of active-site Lys-154 and Asp-173 of Salmonella typhimurium AphA protein.
Arch.Biochem.Biophys., 464, 2007
2A96
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BU of 2a96 by Molmil
Crystal structure of phosphate tethered PhoN of S. typhimurium
Descriptor: PHOSPHATE ION, class A nonspecific acid phosphatase PhoN
Authors:Makde, R.D, Mahajan, S.K, Kumar, V.
Deposit date:2005-07-11
Release date:2006-05-23
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure and Mutational Analysis of the PhoN Protein of Salmonella typhimurium Provide Insight into Mechanistic Details.
Biochemistry, 46, 2007
2AUT
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BU of 2aut by Molmil
Crystal structure of Lys154Asn mutant of mature AphA of S. typhimurium
Descriptor: AphA, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Makde, R.D, Gupta, G.D, Kumar, V.
Deposit date:2005-08-29
Release date:2006-09-05
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural and mutational analyses reveal the functional role of active-site Lys-154 and Asp-173 of Salmonella typhimurium AphA protein.
Arch.Biochem.Biophys., 464, 2007
2AKC
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BU of 2akc by Molmil
Crystal structure of tungstate complex of the PhoN protein from S. typhimurium
Descriptor: TUNGSTATE(VI)ION, class A nonspecific acid phosphatase PhoN
Authors:Makde, R.D, Kumar, V.
Deposit date:2005-08-03
Release date:2006-05-23
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and Mutational Analysis of the PhoN Protein of Salmonella typhimurium Provide Insight into Mechanistic Details.
Biochemistry, 46, 2007
3MVD
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Crystal structure of the chromatin factor RCC1 in complex with the nucleosome core particle
Descriptor: DNA (146-MER), Histone H2A, Histone H2B 1.1, ...
Authors:Makde, R.D, England, J.R, Yennawar, H.P, Tan, S.
Deposit date:2010-05-04
Release date:2010-08-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of RCC1 chromatin factor bound to the nucleosome core particle.
Nature, 467, 2010
7XBJ
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Txp40, an insecticidal toxin protein from Xenorhabdus nematophila
Descriptor: 40kDa insecticidal toxin
Authors:Kinkar, O, Kumar, A, Prashar, A, Hire, R.S, Makde, R.D.
Deposit date:2022-03-21
Release date:2023-03-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:The crystal structure of insecticidal protein Txp40 from Xenorhabdus nematophila reveals a two-domain unique binary toxin with homology to the toxin-antitoxin (TA) system.
Insect Biochem.Mol.Biol., 164, 2023
8WT1
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Crystal structure of S9 carboxypeptidase from Geobacillus sterothermophilus
Descriptor: ALANINE, CITRATE ANION, GLYCEROL, ...
Authors:Chandravanshi, K, Kumar, A, Sen, C, Singh, R, Bhange, G.B, Makde, R.D.
Deposit date:2023-10-17
Release date:2024-03-13
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure and solution scattering of Geobacillus stearothermophilus S9 peptidase reveal structural adaptations for carboxypeptidase activity.
Febs Lett., 598, 2024
7YH4
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BU of 7yh4 by Molmil
Crystal structure of human cytosolic beta-alanyl lysine dipeptidase (PM20D2)
Descriptor: Xaa-Arg dipeptidase, ZINC ION
Authors:Chandravanshi, K, Gaur, N.K, Kumar, A, Makde, R.D.
Deposit date:2022-07-12
Release date:2023-08-02
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Crystal structure of human cytosolic beta-alanyl lysine dipeptidase (PM20D2)
To Be Published
2QRX
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BU of 2qrx by Molmil
Crystal structure of Drosophila melanogaster Translin protein
Descriptor: GM27569p
Authors:Gupta, G.D, Makde, R.D, Kumar, V.
Deposit date:2007-07-30
Release date:2008-08-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Crystal structures of Drosophila mutant translin and characterization of translin variants reveal the structural plasticity of translin proteins.
Febs J., 275, 2008
2QVA
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BU of 2qva by Molmil
Crystal structure of Drosophila melanogaster Translin protein
Descriptor: GM27569p
Authors:Gupta, G.D, Makde, R.D, Kumar, V.
Deposit date:2007-08-08
Release date:2008-08-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Crystal structures of Drosophila mutant translin and characterization of translin variants reveal the structural plasticity of translin proteins.
Febs J., 275, 2008
6IGR
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BU of 6igr by Molmil
Crystal structure of S9 peptidase (S514A mutant in inactive state) from Deinococcus radiodurans R1
Descriptor: Acyl-peptide hydrolase, putative, GLYCEROL
Authors:Yadav, P, Gaur, N.K, Goyal, V.D, Kumar, A, Makde, R.D.
Deposit date:2018-09-25
Release date:2018-11-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Carboxypeptidase in prolyl oligopeptidase family: Unique enzyme activation and substrate-screening mechanisms.
J.Biol.Chem., 294, 2019
6IFG
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BU of 6ifg by Molmil
Crystal structure of M1 zinc metallopeptidase E323A mutant bound to Tyr-ser-ala substrate from Deinococcus radiodurans
Descriptor: FORMIC ACID, Tripeptides (TYR-SER-ALA), ZINC ION, ...
Authors:Agrawal, R, Kumar, A, Kumar, A, Makde, R.D.
Deposit date:2018-09-20
Release date:2019-09-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Two-domain aminopeptidase of M1 family: Structural features for substrate binding and gating in absence of C-terminal domain.
J.Struct.Biol., 208, 2019
6IGP
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BU of 6igp by Molmil
Crystal structure of S9 peptidase (inactive state)from Deinococcus radiodurans R1 in P212121
Descriptor: Acyl-peptide hydrolase, putative, GLYCEROL
Authors:Yadav, P, Goyal, V.D, Kumar, A, Makde, R.D.
Deposit date:2018-09-25
Release date:2018-11-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Carboxypeptidase in prolyl oligopeptidase family: Unique enzyme activation and substrate-screening mechanisms.
J.Biol.Chem., 294, 2019
6IGQ
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BU of 6igq by Molmil
Crystal structure of inactive state of S9 peptidase from Deinococcus radiodurans R1 (PMSF treated)
Descriptor: Acyl-peptide hydrolase, putative, GLYCEROL, ...
Authors:Yadav, P, Goyal, V.D, Kumar, A, Makde, R.D.
Deposit date:2018-09-25
Release date:2018-11-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Carboxypeptidase in prolyl oligopeptidase family: Unique enzyme activation and substrate-screening mechanisms.
J.Biol.Chem., 294, 2019
6IFF
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BU of 6iff by Molmil
Crystal structure of M1 zinc metallopeptidase E323A mutant from Deinococcus radiodurans
Descriptor: SODIUM ION, TYROSINE, ZINC ION, ...
Authors:Agrawal, R, Kumar, A, Kumar, A, Gaur, N.K, Makde, R.D.
Deposit date:2018-09-20
Release date:2019-09-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Structural basis for the unusual substrate specificity of unique two-domain M1 metallopeptidase.
Int.J.Biol.Macromol., 147, 2020
6IKG
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BU of 6ikg by Molmil
Crystal structure of substrate-bound S9 peptidase (S514A mutant) from Deinococcus radiodurans
Descriptor: Acyl-peptide hydrolase, putative, GLYCEROL, ...
Authors:Yadav, P, Kumar, A, Goyal, V.D, Makde, R.D.
Deposit date:2018-10-16
Release date:2018-11-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Carboxypeptidase in prolyl oligopeptidase family: Unique enzyme activation and substrate-screening mechanisms.
J.Biol.Chem., 294, 2019
4R60
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BU of 4r60 by Molmil
Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris
Descriptor: MANGANESE (II) ION, PHOSPHATE ION, Proline dipeptidase, ...
Authors:Kumar, A, Ghosh, B, Are, V.N, Jamdar, S.N, Makde, R.D, Sharma, S.M.
Deposit date:2014-08-22
Release date:2014-09-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris
to be published
8J9C
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Crystal structure of M61 peptidase (apo-form) from Xanthomonas campestris
Descriptor: GLYCEROL, Putative glycyl aminopeptidase, SODIUM ION, ...
Authors:Yadav, P, Kumar, A, Jamdar, S.N, Makde, R.D.
Deposit date:2023-05-03
Release date:2024-05-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of a newly identified M61 family aminopeptidase with broad substrate specificity that is solely responsible for recycling acidic amino acids.
Febs J., 2024
8J9D
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Crystal structure of M61 peptidase (bestatin-bound) from Xanthomonas campestris
Descriptor: 2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, ...
Authors:Yadav, P, Kumar, A, Kulkarni, B.S, Jamdar, S.N, Makde, R.D.
Deposit date:2023-05-03
Release date:2024-05-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of a newly identified M61 family aminopeptidase with broad substrate specificity that is solely responsible for recycling acidic amino acids.
Febs J., 2024
6IRU
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BU of 6iru by Molmil
Crystal structure of Peptidase E from Deinococcus radiodurans in P6422 space group
Descriptor: peptidase DR_1070
Authors:Yadav, P, Chandravanshi, K, Kumar, A, Makde, R.D.
Deposit date:2018-11-14
Release date:2019-11-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Catalytic triad heterogeneity in S51 peptidase family: Structural basis for functional variability.
Proteins, 87, 2019
6KP1
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Crystal structure of two domain M1 zinc metallopeptidase E323A mutant bound to L-methionine amino acid
Descriptor: METHIONINE, SODIUM ION, ZINC ION, ...
Authors:Agrawal, R, Kumar, A, Kumar, A, Makde, R.D.
Deposit date:2019-08-13
Release date:2020-06-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Structural basis for the unusual substrate specificity of unique two-domain M1 metallopeptidase.
Int.J.Biol.Macromol., 147, 2020
6KP0
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Crystal structure of two domain M1 zinc metallopeptidase E323A mutant bound to L-arginine
Descriptor: ARGININE, SODIUM ION, ZINC ION, ...
Authors:Agrawal, R, Kumar, A, Kumar, A, Makde, R.D.
Deposit date:2019-08-13
Release date:2020-01-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for the unusual substrate specificity of unique two-domain M1 metallopeptidase.
Int.J.Biol.Macromol., 147, 2020

 

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