8BT4
| Ribonucleotide Reductase class Ie R2 from Mesoplasma florum, radical-lost ground state | Descriptor: | CALCIUM ION, GLYCEROL, Ribonucleoside-diphosphate reductase | Authors: | Lebrette, H, Srinivas, V, Hogbom, M. | Deposit date: | 2022-11-27 | Release date: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.35 Å) | Cite: | Structure of a ribonucleotide reductase R2 protein radical. Science, 382, 2023
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8BT3
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4XKN
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4XKP
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4XKR
| Crystal structure of NikA from Staphylococcus aureus in complex with Ni-(L-His)(2-methyl-thiazolidine dicarboxylate) (co-crystallization with Ni(II) and CDdeltaHis medium supernatant) | Descriptor: | (2R,4R)-2-methyl-1,3-thiazolidine-2,4-dicarboxylic acid, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, ... | Authors: | Lebrette, H, Cavazza, C. | Deposit date: | 2015-01-12 | Release date: | 2015-02-11 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Novel insights into nickel import in Staphylococcus aureus: the positive role of free histidine and structural characterization of a new thiazolidine-type nickel chelator. Metallomics, 7, 2015
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4XKQ
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4I8C
| X-ray structure of NikA in complex with Ni-(L-His)2 | Descriptor: | ACETATE ION, CHLORIDE ION, GLYCEROL, ... | Authors: | Lebrette, H, Iannello, M, Fontecilla-Camps, J.C, Cavazza, C. | Deposit date: | 2012-12-03 | Release date: | 2013-01-30 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (2.503 Å) | Cite: | The binding mode of Ni-((L)-His)(2) in NikA revealed by X-ray crystallography. J.Inorg.Biochem., 121C, 2012
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4LPS
| Crystal structure of HypB from Helicobacter pylori in complex with nickel | Descriptor: | GLYCEROL, GUANOSINE-5'-DIPHOSPHATE, Hydrogenase/urease nickel incorporation protein HypB, ... | Authors: | Lebrette, H, Sydor, A.M, Ariyakumaran, R, Zamble, D.B, Cavazza, C. | Deposit date: | 2013-07-16 | Release date: | 2013-12-18 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Relationship between Ni(II) and Zn(II) Coordination and Nucleotide Binding by the Helicobacter pylori [NiFe]-Hydrogenase and Urease Maturation Factor HypB. J.Biol.Chem., 289, 2014
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7QBK
| Crystal structure of a second homolog of R2-like ligand-binding oxidase in Sulfolobus acidocaldarius (SaR2loxII) | Descriptor: | FE (III) ION, MANGANESE (III) ION, R2-like ligand-binding oxidase (homolog II) from Sulfolobus acidocaldarius | Authors: | Lebrette, H, Diamanti, R, Srinivas, V, Hogbom, M. | Deposit date: | 2021-11-19 | Release date: | 2022-04-06 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2.26 Å) | Cite: | Comparative structural analysis provides new insights into the function of R2-like ligand-binding oxidase. Febs Lett., 596, 2022
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4OEU
| Crystal structure of NikZ from Campylobacter jejuni in complex with Ni(L-His) | Descriptor: | DI(HYDROXYETHYL)ETHER, GLYCEROL, HISTIDINE, ... | Authors: | Lebrette, H, Cavazza, C. | Deposit date: | 2014-01-13 | Release date: | 2014-10-01 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Promiscuous nickel import in human pathogens: structure, thermodynamics, and evolution of extracytoplasmic nickel-binding proteins. Structure, 22, 2014
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4OFL
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4OER
| Crystal structure of NikA from Brucella suis, unliganded form | Descriptor: | GLYCEROL, NikA protein, SULFATE ION | Authors: | Lebrette, H, Cavazza, C. | Deposit date: | 2014-01-13 | Release date: | 2014-10-01 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | Promiscuous nickel import in human pathogens: structure, thermodynamics, and evolution of extracytoplasmic nickel-binding proteins. Structure, 22, 2014
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4OFO
| Crystal structure of YntA from Yersinia pestis, unliganded form | Descriptor: | Extracytoplasmic Nickel-Binding Protein YpYntA, NICKEL (II) ION | Authors: | Lebrette, H, Cavazza, C. | Deposit date: | 2014-01-15 | Release date: | 2014-10-01 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Promiscuous nickel import in human pathogens: structure, thermodynamics, and evolution of extracytoplasmic nickel-binding proteins. Structure, 22, 2014
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4OEV
| Crystal structure of NikZ from Campylobacter jejuni in complex with Ni(II) ion | Descriptor: | GLYCEROL, NICKEL (II) ION, OXALATE ION, ... | Authors: | Lebrette, H, Cavazza, C. | Deposit date: | 2014-01-13 | Release date: | 2014-10-01 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Promiscuous nickel import in human pathogens: structure, thermodynamics, and evolution of extracytoplasmic nickel-binding proteins. Structure, 22, 2014
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4OES
| Crystal structure of NikA from Brucella suis in complex with Fe(III)-EDTA | Descriptor: | FE (III) ION, GLYCEROL, NikA protein, ... | Authors: | Lebrette, H, Cavazza, C. | Deposit date: | 2014-01-13 | Release date: | 2014-10-01 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (1.951 Å) | Cite: | Promiscuous nickel import in human pathogens: structure, thermodynamics, and evolution of extracytoplasmic nickel-binding proteins. Structure, 22, 2014
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4OET
| Crystal structure of NikZ from Campylobacter jejuni, unliganded form | Descriptor: | GLYCEROL, Putative peptide ABC-transport system periplasmic peptide-binding protein | Authors: | Lebrette, H, Cavazza, C. | Deposit date: | 2014-01-13 | Release date: | 2014-10-01 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Promiscuous nickel import in human pathogens: structure, thermodynamics, and evolution of extracytoplasmic nickel-binding proteins. Structure, 22, 2014
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4OFJ
| Crystal structure of NikA from Staphylococcus aureus in complex with Ni(L-His)2 | Descriptor: | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Extracytoplasmic Nickel-Binding Protein SaNikA, GLYCEROL, ... | Authors: | Lebrette, H, Cavazza, C. | Deposit date: | 2014-01-14 | Release date: | 2015-02-04 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Novel insights into nickel import in Staphylococcus aureus: the positive role of free histidine and structural characterization of a new thiazolidine-type nickel chelator. Metallomics, 7, 2015
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7Z3D
| XFEL structure of Class Ib ribonucleotide reductase dimanganese(II) NrdF in complex with oxidized NrdI from Bacillus cereus | Descriptor: | FLAVIN MONONUCLEOTIDE, MANGANESE (II) ION, Protein NrdI, ... | Authors: | John, J, Lebrette, H, Aurelius, O, Hogbom, M. | Deposit date: | 2022-03-02 | Release date: | 2022-09-21 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Redox-controlled reorganization and flavin strain within the ribonucleotide reductase R2b-NrdI complex monitored by serial femtosecond crystallography. Elife, 11, 2022
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7Z3E
| XFEL structure of Class Ib ribonucleotide reductase dimanganese(II) NrdF in complex with hydroquinone NrdI from Bacillus cereus | Descriptor: | 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL, MANGANESE (II) ION, Protein NrdI, ... | Authors: | John, J, Lebrette, H, Aurelius, O, Hogbom, M. | Deposit date: | 2022-03-02 | Release date: | 2022-09-21 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Redox-controlled reorganization and flavin strain within the ribonucleotide reductase R2b-NrdI complex monitored by serial femtosecond crystallography. Elife, 11, 2022
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6QRZ
| Crystal structure of R2-like ligand-binding oxidase from Sulfolobus acidocaldarius solved by 3D micro-crystal electron diffraction | Descriptor: | FE (III) ION, MANGANESE (III) ION, Ribonucleoside-diphosphate reductase | Authors: | Xu, H, Lebrette, H, Clabbers, M.T.B, Zhao, J, Griese, J.J, Zou, X, Hogbom, M. | Deposit date: | 2019-02-20 | Release date: | 2019-04-24 | Last modified: | 2024-05-15 | Method: | ELECTRON CRYSTALLOGRAPHY (3 Å) | Cite: | Solving a new R2lox protein structure by microcrystal electron diffraction. Sci Adv, 5, 2019
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4UCW
| Structure of the T18V small subunit mutant of D. fructosovorans NiFe- hydrogenase | Descriptor: | CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ... | Authors: | Abou-Hamdan, A, Ceccaldi, P, Lebrette, H, Guttierez-Sanz, O, Richaud, P, Cournac, L, Guigliarelli, B, deLacey, A.L, Leger, C, Volbeda, A, Burlat, B, Dementin, S. | Deposit date: | 2014-12-04 | Release date: | 2015-02-18 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | A Threonine Stabilizes the Nic and Nir Catalytic Intermediates of [Nife]-Hydrogenase. J.Biol.Chem., 290, 2015
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4UCX
| Structure of the T18G small subunit mutant of D. fructosovorans NiFe- hydrogenase | Descriptor: | CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ... | Authors: | Abou-Hamdan, A, Ceccaldi, P, Lebrette, H, Guttierez-Sanz, O, Richaud, P, Cournac, L, Guigliarelli, B, deLacey, A.L, Leger, C, Volbeda, A, Burlat, B, Dementin, S. | Deposit date: | 2014-12-05 | Release date: | 2015-02-18 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | A threonine stabilizes the NiC and NiR catalytic intermediates of [NiFe]-hydrogenase. J. Biol. Chem., 290, 2015
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4UCQ
| Structure of the T18D small subunit mutant of D. fructosovorans NiFe- hydrogenase | Descriptor: | CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ... | Authors: | Abou-Hamdan, A, Ceccaldi, P, Lebrette, H, Guttierez-Sanz, O, Richaud, P, Cournac, L, Guigliarelli, B, deLacey, A.L, Leger, C, Volbeda, A, Burlat, B, Dementin, S. | Deposit date: | 2014-12-04 | Release date: | 2015-02-18 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | A threonine stabilizes the NiC and NiR catalytic intermediates of [NiFe]-hydrogenase. J. Biol. Chem., 290, 2015
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3QIM
| Histidine 416 of the periplamsic binding protein NikA is essential for nickel uptake in Escherichia coli | Descriptor: | ACETATE ION, GLYCEROL, Nickel-binding periplasmic protein, ... | Authors: | Cavazza, C, Martin, L, Laffly, E, Lebrette, H, Cherrier, M.V, Zeppieri, L, Richaud, P, Carriere, M, Fontecilla-Camps, J.C. | Deposit date: | 2011-01-27 | Release date: | 2011-03-02 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Histidine 416 of the periplasmic binding protein NikA is essential for nickel uptake in Escherichia coli Febs Lett., 585, 2011
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7QBP
| Crystal structure of R2-like ligand-binding oxidase from Saccharopolyspora Erythraea | Descriptor: | FE (III) ION, MANGANESE (III) ION, PALMITIC ACID, ... | Authors: | Srinivas, V, Diamanti, R, Lebrette, H, Hogbom, M. | Deposit date: | 2021-11-19 | Release date: | 2022-04-06 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (1.38 Å) | Cite: | Comparative structural analysis provides new insights into the function of R2-like ligand-binding oxidase. Febs Lett., 596, 2022
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