PDB Search results for query - Protein Data Bank Japan

PDB: 146 results

K1U complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae
Descriptor:	(3R)-3-benzyl-4-oxo-4-[(2-oxo-2-phenylethyl)sulfanyl]butanoic acid, CADMIUM ION, NICKEL (II) ION, ...
Authors:	Lee, I.H, Kang, L.W.
Deposit date:	2018-10-16
Release date:	2019-10-23
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	K1U complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae To be published

6IL0

K3U complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae
Descriptor:	NICKEL (II) ION, Peptide deformylase, S-(2-oxo-2-phenylethyl) (2R)-2-benzyl-4,4,4-trifluorobutanethioate
Authors:	Lee, I.H, Kang, L.W.
Deposit date:	2018-10-16
Release date:	2019-10-23
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.93 Å)
Cite:	FBIs complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae To be published

6IL9

One Glycerol complexed Crystal structure of fructuronate-tagaturonate epimerase UxaE from Cohnella laeviribosi
Descriptor:	Fructuronate-tagaturonate epimerase UxaE from Cohnella laeviribosi in complex with 1 glycerol, GLYCEROL, ZINC ION
Authors:	Choi, M.Y, Kang, L.W, Ho, T.H, Nguyen, D.Q, Lee, I.H, Lee, J.H, Park, Y.S, Park, H.J.
Deposit date:	2018-10-17
Release date:	2019-10-23
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.72005355 Å)
Cite:	Crystal structure of fructuronate-tagaturonate epimerase UxaE from Cohnella laeviribosi To Be Published

6IKY

K2U complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae
Descriptor:	(3~{R},4~{R})-4-oxidanyl-3-(phenylmethyl)-4-(phenylmethylsulfanyl)butanoic acid, NICKEL (II) ION, Peptide deformylase
Authors:	Lee, I.H, Kang, L.W.
Deposit date:	2018-10-16
Release date:	2019-10-23
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	FBIs complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae To be published

5C1O

Crystal structure of AMP-PNP complexed D-alanine-D-alanine ligase(DDL) from Yersinia pestis
Descriptor:	D-alanine--D-alanine ligase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:	Tran, H.T, Kang, L.W, Hong, M.K.
Deposit date:	2015-06-15
Release date:	2016-03-02
Last modified:	2024-03-20
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Structure of D-alanine-D-alanine ligase from Yersinia pestis: nucleotide phosphate recognition by the serine loop. Acta Crystallogr D Struct Biol, 72, 2016

5C1P

Crystal structure of ADP and D-alanyl-D-alanine complexed D-alanine-D-alanine ligase(DDL) from Yersinia pestis
Descriptor:	ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, D-ALANINE, ...
Authors:	Tran, H.T, Kang, L.W, Hong, M.K, Ngo, H.P.T.
Deposit date:	2015-06-15
Release date:	2016-03-02
Last modified:	2024-03-20
Method:	X-RAY DIFFRACTION (2.4 Å)
Cite:	Structure of D-alanine-D-alanine ligase from Yersinia pestis: nucleotide phosphate recognition by the serine loop. Acta Crystallogr D Struct Biol, 72, 2016

6JFR

K3U bound crystal structure of class II peptide deformylase from methicillin resistant Staphylococcus aureus
Descriptor:	NICKEL (II) ION, Peptide deformylase, S-(2-oxo-2-phenylethyl) (2R)-2-benzyl-4,4,4-trifluorobutanethioate
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-11
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.4 Å)
Cite:	K3U bound crystal structure of class II peptide deformylase from methicillin resistant Staphylococcus aureus To be published

6JET

Actinonin bound crystal structure of class I type a peptide deformylase from Acinetobacter baumannii
Descriptor:	ACTINONIN, Peptide deformylase, ZINC ION
Authors:	Ho, T.H, Lee, I.H, Kang, L.W.
Deposit date:	2019-02-07
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.6 Å)
Cite:	Actinonin bound crystal structure of class I type a peptide deformylase from Acinetobacter baumannii To be published

6JFO

Formyl-Met-Ala-Ser bound crystal structure of class II peptide deformylase from methicillin resistant Staphylococcus aureus
Descriptor:	FME-ALA-SER, MAGNESIUM ION, Peptide deformylase
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-11
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.6 Å)
Cite:	Formyl-Met-Ala-Ser bound crystal structure of class II peptide deformylase from methicillin resistant Staphylococcus aureus To be published

6JF3

Actinonin bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii
Descriptor:	ACTINONIN, Peptide deformylase, ZINC ION
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-08
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.01 Å)
Cite:	Actinonin bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii To be published

6JES

Apo crystal structure of class I type b peptide deformylase from Acinetobacter baumannii
Descriptor:	GLYCEROL, Peptide deformylase, ZINC ION
Authors:	Jung, K.H, Ho, T.H, Lee, I.H, Kang, L.W.
Deposit date:	2019-02-07
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.75 Å)
Cite:	Apo crystal structure of class I type b peptide deformylase from Acinetobacter baumannii To be published

6JEW

K3U bound crystal peptide deformylase from Acinetobacter baumanii
Descriptor:	Peptide deformylase, S-(2-oxo-2-phenylethyl) (2R)-2-benzyl-4,4,4-trifluorobutanethioate, ZINC ION
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-07
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	K3U bound crystal peptide deformylase from Acinetobacter baumanii To be published

6JF9

Apo crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa
Descriptor:	GLYCEROL, NICKEL (II) ION, Peptide deformylase
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-08
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Apo crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa To be published

6JFC

Actinonin bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa
Descriptor:	ACTINONIN, NICKEL (II) ION, Peptide deformylase
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-08
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.04 Å)
Cite:	Actinonin bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa To be published

6JF4

K1U bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii
Descriptor:	(3R)-3-benzyl-4-oxo-4-[(2-oxo-2-phenylethyl)sulfanyl]butanoic acid, Peptide deformylase, ZINC ION
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-08
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	K1U bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii To be published

6JFF

K3U bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa
Descriptor:	NICKEL (II) ION, Peptide deformylase, S-(2-oxo-2-phenylethyl) (2R)-2-benzyl-4,4,4-trifluorobutanethioate
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-08
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	K3U bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa To be published

6JFQ

K2U bound crystal structure of class II peptide deformylase from methicillin resistant Staphylococcus aureus
Descriptor:	(3~{R},4~{R})-4-oxidanyl-3-(phenylmethyl)-4-(phenylmethylsulfanyl)butanoic acid, NICKEL (II) ION, Peptide deformylase
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-11
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	K2U bound crystal structure of class II peptide deformylase from methicillin resistant Staphylococcus aureus To be published

6JFA

Met-Ala-Ser bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa
Descriptor:	MET-ALA-SER, NICKEL (II) ION, Peptide deformylase
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-08
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.93 Å)
Cite:	Met-Ala-Ser bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa To be published

6JER

Apo crystal structure of class I type a peptide deformylase from Acinetobacter baumannii
Descriptor:	Peptide deformylase, ZINC ION
Authors:	Ho, T.H, Lee, I.H, Kang, L.W.
Deposit date:	2019-02-07
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.4 Å)
Cite:	Expression, crystallization, and preliminary X-ray crystallographic analysis of peptide deformylase from Acinetobacter baumanii Biodesign, 5, 2017

6JEU

K1U bound crystal peptide deformylase from Acinetobacter baumanii
Descriptor:	(3R)-3-benzyl-4-oxo-4-[(2-oxo-2-phenylethyl)sulfanyl]butanoic acid, Peptide deformylase, ZINC ION
Authors:	Ho, T.H, Lee, I.H, Kang, L.W.
Deposit date:	2019-02-07
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	K1U bound crystal peptide deformylase from Acinetobacter baumanii To be published

6JF7

K3U bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii
Descriptor:	Peptide deformylase, S-(2-oxo-2-phenylethyl) (2R)-2-benzyl-4,4,4-trifluorobutanethioate, ZINC ION
Authors:	Jung, K.H, Ho, T.H, Lee, I.H, Kang, L.W.
Deposit date:	2019-02-08
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	K3U bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii To be published

6JEV

K2U bound crystal structure of class I type a peptide deformylase from Acinetobacter baumanii
Descriptor:	(3~{R},4~{R})-4-oxidanyl-3-(phenylmethyl)-4-(phenylmethylsulfanyl)butanoic acid, Peptide deformylase, ZINC ION
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-07
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	K2U bound crystal peptide deformylase from Acinetobacter baumanii To be published

6JFG

K1U bound crystal structure of class II peptide deformylase from methicillin resistant Staphylococcus aureus
Descriptor:	(3R)-3-benzyl-4-oxo-4-[(2-oxo-2-phenylethyl)sulfanyl]butanoic acid, NICKEL (II) ION, Peptide deformylase
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-08
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.6 Å)
Cite:	K1U bound crystal structure of class II peptide deformylase from methicillin resistant Staphylococcus aureus To be published

6JF5

K2U bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii
Descriptor:	(3~{R},4~{R})-4-oxidanyl-3-(phenylmethyl)-4-(phenylmethylsulfanyl)butanoic acid, Peptide deformylase, ZINC ION
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-08
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	K2U bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii To be published

6JFE

K2U bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa
Descriptor:	NICKEL (II) ION, Peptide deformylase, S-(2-oxo-2-phenylethyl) (2R)-2-benzyl-4,4,4-trifluorobutanethioate
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-08
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	K2U bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa To be published

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Total results:	146
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Kang, L"