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PDB: 181 results
8YXN
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BU of 8yxn by Molmil
X-ray structure of Clostridium perfringens autolysin catalytic domain in the P1 form
Descriptor: Cell surface protein
Authors:Kamitori, S, Tamai, E.
Deposit date:2024-04-02
Release date:2024-05-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:X-ray structure and mutagenesis analyses of Clostridioides difficile endolysin Ecd09610 glucosaminidase domain.
Biochem.Biophys.Res.Commun., 715, 2024
8YXK
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BU of 8yxk by Molmil
X-ray structure of Clostridioides difficile endolysin Ecd09610 glucosaminidase domain.
Descriptor: Phage cell wall hydrolase
Authors:Kamitori, S, Tamai, E.
Deposit date:2024-04-02
Release date:2024-05-15
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:X-ray structure and mutagenesis analyses of Clostridioides difficile endolysin Ecd09610 glucosaminidase domain.
Biochem.Biophys.Res.Commun., 715, 2024
5XCC
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BU of 5xcc by Molmil
X-ray structure of Clostridium perfringens pili protein CppA
Descriptor: Probable surface protein
Authors:Kamitori, S, Tamai, E.
Deposit date:2017-03-22
Release date:2018-02-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Structures of major pilins in Clostridium perfringens demonstrate dynamic conformational change.
Acta Crystallogr D Struct Biol, 75, 2019
5XCB
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BU of 5xcb by Molmil
X-ray structure of domains D1 and D2 of Clostridium perfringens pili protein CppA
Descriptor: Probable surface protein
Authors:Kamitori, S, Tamai, E.
Deposit date:2017-03-22
Release date:2018-02-28
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Structures of major pilins in Clostridium perfringens demonstrate dynamic conformational change.
Acta Crystallogr D Struct Biol, 75, 2019
6L68
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BU of 6l68 by Molmil
X-ray structure of human galectin-10 in complex with D-allose
Descriptor: Galectin-10, beta-D-allopyranose
Authors:Kamitori, S.
Deposit date:2019-10-28
Release date:2020-03-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Structures of human galectin-10/monosaccharide complexes demonstrate potential of monosaccharides as effectors in forming Charcot-Leyden crystals.
Biochem.Biophys.Res.Commun., 2020
6L67
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BU of 6l67 by Molmil
X-ray structure of human galectin-10 in complex with D-galactose
Descriptor: Galectin-10, beta-D-galactopyranose
Authors:Kamitori, S.
Deposit date:2019-10-28
Release date:2020-03-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structures of human galectin-10/monosaccharide complexes demonstrate potential of monosaccharides as effectors in forming Charcot-Leyden crystals.
Biochem.Biophys.Res.Commun., 2020
6L6D
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BU of 6l6d by Molmil
X-ray structure of human galectin-10 in complex with D-N-acetylgalactosamine
Descriptor: 2-acetamido-2-deoxy-beta-D-galactopyranose, Galectin-10
Authors:Kamitori, S.
Deposit date:2019-10-28
Release date:2020-03-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Structures of human galectin-10/monosaccharide complexes demonstrate potential of monosaccharides as effectors in forming Charcot-Leyden crystals.
Biochem.Biophys.Res.Commun., 2020
6L6B
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BU of 6l6b by Molmil
X-ray structure of human galectin-10 in complex with L-fucose
Descriptor: Galectin-10, beta-L-fucopyranose
Authors:Kamitori, S.
Deposit date:2019-10-28
Release date:2020-03-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:Structures of human galectin-10/monosaccharide complexes demonstrate potential of monosaccharides as effectors in forming Charcot-Leyden crystals.
Biochem.Biophys.Res.Commun., 2020
6L6C
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BU of 6l6c by Molmil
X-ray structure of human galectin-10 in complex with D-arabinose
Descriptor: Galectin-10, alpha-D-arabinopyranose
Authors:Kamitori, S.
Deposit date:2019-10-28
Release date:2020-03-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structures of human galectin-10/monosaccharide complexes demonstrate potential of monosaccharides as effectors in forming Charcot-Leyden crystals.
Biochem.Biophys.Res.Commun., 2020
6L64
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BU of 6l64 by Molmil
X-ray structure of human galectin-10 in complex with D-glucose
Descriptor: Galectin-10, beta-D-glucopyranose
Authors:Kamitori, S.
Deposit date:2019-10-28
Release date:2020-03-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Structures of human galectin-10/monosaccharide complexes demonstrate potential of monosaccharides as effectors in forming Charcot-Leyden crystals.
Biochem.Biophys.Res.Commun., 2020
6L6A
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BU of 6l6a by Molmil
X-ray structure of human galectin-10 in complex with D-mannose
Descriptor: Galectin-10, beta-D-mannopyranose
Authors:Kamitori, S.
Deposit date:2019-10-28
Release date:2020-03-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structures of human galectin-10/monosaccharide complexes demonstrate potential of monosaccharides as effectors in forming Charcot-Leyden crystals.
Biochem.Biophys.Res.Commun., 2020
8GSY
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BU of 8gsy by Molmil
X-ray structure of Clostridium perfringens pili protein B N-terminal domain
Descriptor: Peptidoglycan bound protein
Authors:Kamitori, S, Yamada, M, Tamai, E.
Deposit date:2022-09-07
Release date:2023-06-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural and biochemical characterization of Clostridium perfringens pili protein B collagen-binding domains.
Febs Lett., 597, 2023
8GSX
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BU of 8gsx by Molmil
X-ray structure of Clostridium perfringens pili protein B collagen-binding domains
Descriptor: ACETATE ION, pili protein
Authors:Kamitori, S, Yamada, M, Tamai, E.
Deposit date:2022-09-07
Release date:2023-06-07
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Structural and biochemical characterization of Clostridium perfringens pili protein B collagen-binding domains.
Febs Lett., 597, 2023
8WLB
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BU of 8wlb by Molmil
X-ray structure of Enterobacter cloacae allose-binding protein in complex with D-psicose
Descriptor: Allose ABC transporter, alpha-D-psicopyranose
Authors:Kamitori, S.
Deposit date:2023-09-29
Release date:2023-10-25
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:X-ray structures of Enterobacter cloacae allose-binding protein in complexes with monosaccharides demonstrate its unique recognition mechanism for high affinity to allose.
Biochem.Biophys.Res.Commun., 682, 2023
8WL9
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BU of 8wl9 by Molmil
X-ray structure of Enterobacter cloacae allose-binding protein in complex with D-ribose
Descriptor: Allose ABC transporter, beta-D-ribopyranose
Authors:Kamitori, S.
Deposit date:2023-09-29
Release date:2023-10-25
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:X-ray structures of Enterobacter cloacae allose-binding protein in complexes with monosaccharides demonstrate its unique recognition mechanism for high affinity to allose.
Biochem.Biophys.Res.Commun., 682, 2023
8WL7
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BU of 8wl7 by Molmil
X-ray structure of Enterobacter cloacae allose-binding protein in complex with D-allose
Descriptor: Allose ABC transporter, beta-D-allopyranose
Authors:Kamitori, S.
Deposit date:2023-09-29
Release date:2023-10-25
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:X-ray structures of Enterobacter cloacae allose-binding protein in complexes with monosaccharides demonstrate its unique recognition mechanism for high affinity to allose.
Biochem.Biophys.Res.Commun., 682, 2023
8WL5
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BU of 8wl5 by Molmil
X-ray structure of Enterobacter cloacae allose-binding protein in free form
Descriptor: 1,2-ETHANEDIOL, Allose ABC transporter
Authors:Kamitori, S.
Deposit date:2023-09-29
Release date:2023-10-25
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:X-ray structures of Enterobacter cloacae allose-binding protein in complexes with monosaccharides demonstrate its unique recognition mechanism for high affinity to allose.
Biochem.Biophys.Res.Commun., 682, 2023
7WRR
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BU of 7wrr by Molmil
X-ray structure of Thermus thermophilus HB8 transketorase in complex with TPP and MES
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, THIAMINE DIPHOSPHATE, ...
Authors:Kamitori, S, Yoshihara, A.
Deposit date:2022-01-27
Release date:2022-12-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structural and biochemical characterizations of Thermus thermophilus HB8 transketolase producing a heptulose.
Appl.Microbiol.Biotechnol., 107, 2023
7WRT
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BU of 7wrt by Molmil
X-ray structure ofThermus thermophilus HB8 transketorase demonstrate in complex with TPP and D-erythrose-4-phosphate
Descriptor: CALCIUM ION, ERYTHOSE-4-PHOSPHATE, THIAMINE DIPHOSPHATE, ...
Authors:Kamitori, S, Yoshihara, A.
Deposit date:2022-01-27
Release date:2022-12-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural and biochemical characterizations of Thermus thermophilus HB8 transketolase producing a heptulose.
Appl.Microbiol.Biotechnol., 107, 2023
6IXZ
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BU of 6ixz by Molmil
X-ray structure of sortase C from Clostridium perfringens SM101
Descriptor: Sortase family protein
Authors:Kamitori, S, Tamai, E.
Deposit date:2018-12-12
Release date:2019-08-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structures of major pilins in Clostridium perfringens demonstrate dynamic conformational change.
Acta Crystallogr D Struct Biol, 75, 2019
6IXY
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BU of 6ixy by Molmil
X-ray structure of major pilin from C. perfringens SM101
Descriptor: pilin
Authors:Kamitori, S, Tamai, E.
Deposit date:2018-12-12
Release date:2019-08-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Structures of major pilins in Clostridium perfringens demonstrate dynamic conformational change.
Acta Crystallogr D Struct Biol, 75, 2019
4KRT
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BU of 4krt by Molmil
X-ray structure of endolysin from clostridium perfringens phage phiSM101
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, Autolytic lysozyme, ...
Authors:Kamitori, S, Yoshida, H.
Deposit date:2013-05-17
Release date:2014-04-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:X-ray structure of a novel endolysin encoded by episomal phage phiSM101 of Clostridium perfringens.
Mol.Microbiol., 92, 2014
2GS9
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BU of 2gs9 by Molmil
Crystal structure of TT1324 from Thermus thermophilis HB8
Descriptor: FORMIC ACID, Hypothetical protein TT1324, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Kamitori, S, Abe, A, Ebihara, A, Kanagawa, M, Nakagawa, N, Kuroishi, C, Agari, Y, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-04-25
Release date:2007-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of TT1324 from Thermus thermophilis HB8
To be Published
4KRU
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BU of 4kru by Molmil
X-ray structure of catalytic domain of endolysin from clostridium perfringens phage phiSM101
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, Autolytic lysozyme, ...
Authors:Kamitori, S, Yoshida, H.
Deposit date:2013-05-17
Release date:2014-04-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:X-ray structure of a novel endolysin encoded by episomal phage phiSM101 of Clostridium perfringens.
Mol.Microbiol., 92, 2014
1JI2
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BU of 1ji2 by Molmil
Improved X-ray Structure of Thermoactinomyces vulgaris R-47 alpha-Amylase 2
Descriptor: ALPHA-AMYLASE II, CALCIUM ION
Authors:Kamitori, S, Abe, A, Ohtaki, A, Kaji, A, Tonozuka, T, Sakano, Y.
Deposit date:2001-06-28
Release date:2002-06-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures and structural comparison of Thermoactinomyces vulgaris R-47 alpha-amylase 1 (TVAI) at 1.6 A resolution and alpha-amylase 2 (TVAII) at 2.3 A resolution.
J.Mol.Biol., 318, 2002

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