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PDB: 70 results

2QZD
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Fitted structure of SCR4 of DAF into cryoEM density
Descriptor: Complement decay-accelerating factor
Authors:Hafenstein, S, Bowman, V.D, Chipman, P.R, Bator Kelly, C.M, Lin, F, Medof, M.E, Rossmann, M.G.
Deposit date:2007-08-16
Release date:2007-10-30
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (14 Å)
Cite:Interaction of decay-accelerating factor with coxsackievirus b3.
J.Virol., 81, 2007
2NSU
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BU of 2nsu by Molmil
Crystal structure of the ectodomain of human transferrin receptor fitted into a cryo-EM reconstruction of canine parvovirus and feline transferrin receptor complex
Descriptor: Transferrin receptor protein 1
Authors:Hafenstein, S, Kostyuchenko, V.A, Rossmann, M.G.
Deposit date:2006-11-06
Release date:2007-03-27
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (27 Å)
Cite:Asymmetric binding of transferrin receptor to parvovirus capsids.
Proc.Natl.Acad.Sci.Usa, 104, 2007
2QZF
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BU of 2qzf by Molmil
SCR1 of DAF from 1ojv fitted into cryoEM density
Descriptor: Complement decay-accelerating factor
Authors:Hafenstein, S, Bowman, V.D, Chipman, P.R, Bator Kelly, C.M, Lin, F, Medof, M.E, Rossmann, M.G.
Deposit date:2007-08-16
Release date:2007-10-30
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (14 Å)
Cite:Interaction of decay-accelerating factor with coxsackievirus b3.
J.Virol., 81, 2007
2QZH
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BU of 2qzh by Molmil
SCR2/3 of DAF from the NMR structure 1nwv fitted into a cryoEM reconstruction of CVB3-RD complexed with DAF
Descriptor: Complement decay-accelerating factor
Authors:Hafenstein, S, Bowman, V.D, Chipman, P.R, Bator Kelly, C.M, Lin, F, Medof, M.E, Rossmann, M.G.
Deposit date:2007-08-16
Release date:2007-10-30
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (14 Å)
Cite:Interaction of decay-accelerating factor with coxsackievirus b3.
J.Virol., 81, 2007
3GK8
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BU of 3gk8 by Molmil
X-ray crystal structure of the Fab from MAb 14, mouse antibody against Canine Parvovirus
Descriptor: Fab 14 Heavy Chain, Fab 14 Light Chain
Authors:Hafenstein, S, Bowman, V, Sun, T, Nelson, C, Palermo, L, Chipman, P, Battisti, A, Parrish, C.
Deposit date:2009-03-10
Release date:2009-06-16
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural comparison of different antibodies interacting with parvovirus capsids.
J.Virol., 83, 2009
3IY3
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BU of 3iy3 by Molmil
Variable domains of the computer generated model (WAM) of Fab 8 fitted into the cryoEM reconstruction of the virus-Fab 8 complex
Descriptor: antibody fragment from neutralizing antibody 8 (heavy chain), antibody fragment from neutralizing antibody 8 (light chain)
Authors:Hafenstein, S, Bowman, V.D, Sun, T, Nelson, C.D, Palermo, L.M, Chipman, P.R, Battisti, A.J, Parrish, C.R, Rossmann, M.G.
Deposit date:2009-04-09
Release date:2009-05-12
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (11.1 Å)
Cite:Structural comparison of different antibodies interacting with parvovirus capsids
J.Virol., 83, 2009
3IY0
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BU of 3iy0 by Molmil
Variable domains of the x-ray structure of Fab 14 fitted into the cryoEM reconstruction of the virus-Fab 14 complex
Descriptor: Fab 14, heavy domain, light domain
Authors:Hafenstein, S, Bowman, V.D, Sun, T, Nelson, C.D, Palermo, L.M, Chipman, P.R, Battisti, A.J, Parrish, C.R, Rossmann, M.G.
Deposit date:2009-04-07
Release date:2009-05-12
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (12.5 Å)
Cite:Structural comparison of different antibodies interacting with parvovirus capsids
J.Virol., 83, 2009
3IY7
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BU of 3iy7 by Molmil
Variable domains of the computer generated model (WAM) of Fab F fitted into the cryoEM reconstruction of the virus-Fab F complex
Descriptor: fragment from neutralizing antibody F (heavy chain), fragment from neutralizing antibody F (light chain)
Authors:Hafenstein, S, Bowman, V.D, Sun, T, Nelson, C.D, Palermo, L.M, Chipman, P.R, Battisti, A.J, Parrish, C.R, Rossmann, M.G.
Deposit date:2009-04-09
Release date:2009-05-12
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (14 Å)
Cite:Structural comparison of different antibodies interacting with parvovirus capsids
J.Virol., 83, 2009
3IY2
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BU of 3iy2 by Molmil
Variable domains of the computer generated model (WAM) of Fab 6 fitted into the cryoEM reconstruction of the virus-Fab 6 complex
Descriptor: Antibody 6, heavy chain, light chain
Authors:Hafenstein, S, Bowman, V.D, Sun, T, Nelson, C.D, Palermo, L.M, Chipman, P.R, Battisti, A.J, Parrish, C.R, Rossmann, M.G.
Deposit date:2009-04-09
Release date:2009-05-12
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (18 Å)
Cite:Structural comparison of different antibodies interacting with parvovirus capsids
J.Virol., 83, 2009
3IY5
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BU of 3iy5 by Molmil
Variable domains of the mouse Fab (1AIF) fitted into the cryoEM reconstruction of the virus-Fab 16 complex
Descriptor: antibody fragment IGG2A (heavy chain), antibody fragment IGG2A (light chain)
Authors:Hafenstein, S, Bowman, V.D, Sun, T, Nelson, C.D, Palermo, L.M, Chipman, P.R, Battisti, A.J, Parrish, C.R, Rossmann, M.G.
Deposit date:2009-04-09
Release date:2009-05-12
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (18 Å)
Cite:Structural comparison of different antibodies interacting with parvovirus capsids
J.Virol., 83, 2009
3IY4
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BU of 3iy4 by Molmil
Variable domains of the computer generated model (WAM) of Fab 15 fitted into the cryoEM reconstruction of the virus-Fab 15 complex
Descriptor: fragment of neutralizing antibody 15 (heavy chain), fragment of neutralizing antibody 15 (light chain)
Authors:Hafenstein, S, Bowman, V.D, Sun, T, Nelson, C.D, Palermo, L.M, Chipman, P.R, Battisti, A.J, Parrish, C.R, Rossmann, M.G.
Deposit date:2009-04-09
Release date:2009-05-12
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (11.7 Å)
Cite:Structural comparison of different antibodies interacting with parvovirus capsids
J.Virol., 83, 2009
3IY6
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BU of 3iy6 by Molmil
Variable domains of the computer generated model (WAM) of Fab E fitted into the cryoEM reconstruction of the virus-Fab E complex
Descriptor: fragment from neutralizing antibody E (heavy chain), fragment from neutralizing antibody E (light chain)
Authors:Hafenstein, S, Bowman, V.D, Sun, T, Nelson, C.D, Palermo, L.M, Chipman, P.R, Battisti, A.J, Parrish, C.R, Rossmann, M.G.
Deposit date:2009-04-09
Release date:2009-05-12
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Structural comparison of different antibodies interacting with parvovirus capsids
J.Virol., 83, 2009
3IY1
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BU of 3iy1 by Molmil
Variable domains of the WAM of Fab B fitted into the cryoEM reconstruction of the virus-Fab B complex
Descriptor: Fab B, heavy chain, light chain
Authors:Hafenstein, S, Bowman, V.D, Sun, T, Nelson, C.D, Palermo, L.M, Battisti, A.J, Parrish, C.R, Rossmann, M.G.
Deposit date:2009-04-09
Release date:2009-05-12
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (18 Å)
Cite:Structural comparison of different antibodies interacting with parvovirus capsids
J.Virol., 83, 2009
1M0F
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BU of 1m0f by Molmil
Structural Studies of Bacteriophage alpha3 Assembly, Cryo-electron microscopy
Descriptor: Capsid Protein F, Major Spike Protein G, Scaffolding Protein B, ...
Authors:Bernal, R.A, Hafenstein, S, Olson, N.H, Bowman, V.D, Chipman, P.R, Baker, T.S, Fane, B.A, Rossmann, M.G.
Deposit date:2002-06-12
Release date:2002-12-25
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (16 Å)
Cite:Structural Studies of Bacteriophage alpha3 Assembly
J.Mol.Biol., 325, 2003
7RYJ
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BU of 7ryj by Molmil
Cryo EM analysis reveals inherent flexibility of authentic murine papillomavirus capsids
Descriptor: Major capsid protein L1
Authors:Hartmann, S.R, Hafenstein, S.
Deposit date:2021-08-25
Release date:2021-11-10
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo EM Analysis Reveals Inherent Flexibility of Authentic Murine Papillomavirus Capsids.
Viruses, 13, 2021
6OAS
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BU of 6oas by Molmil
Structure of canine parvovirus in complex with transferrin receptor type-1
Descriptor: Capsid protein VP1
Authors:Lee, H, Hafenstein, S.
Deposit date:2019-03-18
Release date:2019-09-18
Last modified:2019-12-04
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Transferrin receptor binds virus capsid with dynamic motion.
Proc.Natl.Acad.Sci.USA, 116, 2019
1RB8
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BU of 1rb8 by Molmil
The phiX174 DNA binding protein J in two different capsid environments.
Descriptor: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE, Capsid protein, DNA (5'-D(P*CP*AP*AP*A)-3'), ...
Authors:Bernal, R.A, Hafenstein, S, Esmeralda, R, Fane, B.A, Rossmann, M.G.
Deposit date:2003-11-03
Release date:2004-04-13
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:The phiX174 Protein J Mediates DNA Packaging and Viral Attachment to Host Cells.
J.Mol.Biol., 337, 2004
4QYK
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BU of 4qyk by Molmil
Crystal structure of a canine parvovirus variant
Descriptor: Capsid protein VP1, MAGNESIUM ION
Authors:Lukk, T, Organtini, L.J, Hafenstein, S.U.
Deposit date:2014-07-24
Release date:2014-12-10
Last modified:2015-01-28
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Global Displacement of Canine Parvovirus by a Host-Adapted Variant: Structural Comparison between Pandemic Viruses with Distinct Host Ranges.
J.Virol., 89, 2015
5KEP
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BU of 5kep by Molmil
High resolution cryo-EM maps of Human Papillomavirus 16 reveal L2 location and heparin-induced conformational changes
Descriptor: Major capsid protein L1
Authors:Guan, J, Bywaters, S.M, Brendle, S.A, Ashley, R.E, Makhov, A.M, Conway, J.F, Christensen, N.D, Hafenstein, S.
Deposit date:2016-06-10
Release date:2017-01-25
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Cryoelectron Microscopy Maps of Human Papillomavirus 16 Reveal L2 Densities and Heparin Binding Site.
Structure, 25, 2017
5KEQ
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BU of 5keq by Molmil
High resolution cryo-EM maps of Human papillomavirus 16 reveal L2 location and heparin-induced conformational changes
Descriptor: Major capsid protein L1
Authors:Guan, J, Bywaters, S.M, Brendle, S.A, Ashley, R.E, Makhov, A.M, Conway, J.F, Christensen, N.D, Hafenstein, S.
Deposit date:2016-06-10
Release date:2017-01-25
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Cryoelectron Microscopy Maps of Human Papillomavirus 16 Reveal L2 Densities and Heparin Binding Site.
Structure, 25, 2017
3URO
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BU of 3uro by Molmil
Poliovirus receptor CD155 D1D2
Descriptor: Poliovirus receptor
Authors:Zhang, P, Mueller, S, Morais, M.C, Bator, C.M, Bowman, V.D, Hafenstein, S, Wimmer, E, Rossmann, M.G.
Deposit date:2011-11-22
Release date:2011-12-07
Method:X-RAY DIFFRACTION (3.5005 Å)
Cite:Crystal structure of CD155 and electron microscopic studies of its complexes with polioviruses.
Proc.Natl.Acad.Sci.USA, 105, 2008
6W6V
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BU of 6w6v by Molmil
Structure of yeast RNase MRP holoenzyme
Descriptor: RNA component of RNase MRP NME1, RNases MRP/P 32.9 kDa subunit, Ribonuclease MRP protein subunit RMP1, ...
Authors:Perederina, A, Li, D, Lee, H, Bator, C, Berezin, I, Hafenstein, S.L, Krasilnikov, A.S.
Deposit date:2020-03-17
Release date:2020-07-15
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Cryo-EM structure of catalytic ribonucleoprotein complex RNase MRP.
Nat Commun, 11, 2020
2XGK
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BU of 2xgk by Molmil
Virus like particle of L172W mutant of Minute Virus of Mice - the immunosuppressive strain
Descriptor: COAT PROTEIN VP2
Authors:Plevka, P, Hafenstein, S, Tattersall, P, Cotmore, S, Farr, G, D'Abramo, A, Rossmann, M.G.
Deposit date:2010-06-04
Release date:2011-04-20
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:Structure of a Packaging-Defective Mutant of Minute Virus of Mice Indicates that the Genome is Packaged Via a Pore at a 5-Fold Axis.
J.Virol., 85, 2011
2X5I
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BU of 2x5i by Molmil
Crystal structure echovirus 7
Descriptor: LAURIC ACID, VP1, VP2, ...
Authors:Plevka, P, Hafenstein, S, Zhang, Y, Bowman, V.D, Chipman, P.R, Bator, C.M, Rossmann, M.G.
Deposit date:2010-02-08
Release date:2010-12-22
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Interaction of Decay-Accelerating Factor with Echovirus 7.
J.Virol., 84, 2010
1M06
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BU of 1m06 by Molmil
Structural Studies of Bacteriophage alpha3 Assembly, X-Ray Crystallography
Descriptor: 5'-D(P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR))-3', Capsid Protein, Major spike protein, ...
Authors:Bernal, R.A, Hafenstein, S, Olson, N.H, Bowman, V, Chipman, P.R, Baker, T.S, Fane, B.A, Rossmann, M.G.
Deposit date:2002-06-12
Release date:2002-12-25
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural Studies of Bacteriophage alpha3 Assembly
J.Mol.Biol., 325, 2003

 

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