Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 80 results

2GEJ
DownloadVisualize
BU of 2gej by Molmil
Crystal Structure of phosphatidylinositol mannosyltransferase (PimA) from Mycobacterium smegmatis in complex with GDP-Man
Descriptor: GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE, PHOSPHATIDYLINOSITOL MANNOSYLTRANSFERASE (PimA)
Authors:Guerin, M.E, Buschiazzo, A, Kordulakova, J, Jackson, M, Alzari, P.M.
Deposit date:2006-03-20
Release date:2007-04-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular recognition and interfacial catalysis by the essential phosphatidylinositol mannosyltransferase PimA from mycobacteria.
J.Biol.Chem., 282, 2007
2GEK
DownloadVisualize
BU of 2gek by Molmil
Crystal Structure of phosphatidylinositol mannosyltransferase (PimA) from Mycobacterium smegmatis in complex with GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, PHOSPHATIDYLINOSITOL MANNOSYLTRANSFERASE (PimA)
Authors:Guerin, M.E, Buschiazzo, A, Kordulakova, J, Jackson, M, Alzari, P.M.
Deposit date:2006-03-20
Release date:2007-04-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular recognition and interfacial catalysis by the essential phosphatidylinositol mannosyltransferase PimA from mycobacteria.
J.Biol.Chem., 282, 2007
6H8L
DownloadVisualize
BU of 6h8l by Molmil
Structure of peptidoglycan deacetylase PdaC from Bacillus subtilis
Descriptor: L(+)-TARTARIC ACID, Peptidoglycan-N-acetylmuramic acid deacetylase PdaC, ZINC ION
Authors:Sainz-Polo, M.A, Grifoll-Romero, L, Albesa-Jove, D, Planas, A, Guerin, M.E.
Deposit date:2018-08-02
Release date:2019-11-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Structure-function relationships underlying the dualN-acetylmuramic andN-acetylglucosamine specificities of the bacterial peptidoglycan deacetylase PdaC.
J.Biol.Chem., 294, 2019
6H8N
DownloadVisualize
BU of 6h8n by Molmil
Structure of peptidoglycan deacetylase PdaC from Bacillus subtilis - mutant D285S
Descriptor: GLYCEROL, PHOSPHATE ION, Peptidoglycan-N-acetylmuramic acid deacetylase PdaC, ...
Authors:Sainz-Polo, M.A, Grifoll-Romero, L, Albesa-Jove, D, Planas, A, Guerin, M.E.
Deposit date:2018-08-02
Release date:2019-11-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Structure-function relationships underlying the dualN-acetylmuramic andN-acetylglucosamine specificities of the bacterial peptidoglycan deacetylase PdaC.
J.Biol.Chem., 294, 2019
7PUJ
DownloadVisualize
BU of 7puj by Molmil
Crystal structure of Endoglycosidase E GH18 domain from Enterococcus faecalis
Descriptor: Beta-N-acetylhexosaminidase, CHLORIDE ION, ZINC ION
Authors:Garcia-Alija, M, Du, J.J, Trastoy, B, Sundberg, E.J, Guerin, M.E.
Deposit date:2021-09-30
Release date:2022-03-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.752 Å)
Cite:Mechanism of cooperative N-glycan processing by the multi-modular endoglycosidase EndoE.
Nat Commun, 13, 2022
6MDS
DownloadVisualize
BU of 6mds by Molmil
Crystal structure of Streptococcus pyogenes endo-beta-N-acetylglucosaminidase (EndoS2) with complex biantennary glycan
Descriptor: CALCIUM ION, Endo-beta-N-acetylglucosaminidase, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Klontz, E.H, Trastoy, B, Orwenyo, J, Wang, L.X, Guerin, M.E, Sundberg, E.J.
Deposit date:2018-09-05
Release date:2019-02-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular Basis of Broad SpectrumN-Glycan Specificity and Processing of Therapeutic IgG Monoclonal Antibodies by Endoglycosidase S2.
ACS Cent Sci, 5, 2019
6MDV
DownloadVisualize
BU of 6mdv by Molmil
Crystal structure of Streptococcus pyogenes endo-beta-N-acetylglucosaminidase (EndoS2) with high-mannose glycan
Descriptor: CALCIUM ION, Endo-beta-N-acetylglucosaminidase, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Klontz, E.H, Trastoy, B, Orwenyo, J, Wang, L.X, Guerin, M.E, Sundberg, E.J.
Deposit date:2018-09-05
Release date:2019-02-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular Basis of Broad SpectrumN-Glycan Specificity and Processing of Therapeutic IgG Monoclonal Antibodies by Endoglycosidase S2.
ACS Cent Sci, 5, 2019
7NWF
DownloadVisualize
BU of 7nwf by Molmil
Crystal structure of Bacteroides thetaiotamicron EndoBT-3987 in complex with hybrid-type glycan (GalGlcNAcMan5GlcNAc) product
Descriptor: Endo-beta-N-acetylglucosaminidase F1, GLYCEROL, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Trastoy, B, Du, J.J, Garcia-Alija, M, Sundberg, E.J, Guerin, M.E.
Deposit date:2021-03-16
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:GH18 endo-beta-N-acetylglucosaminidases use distinct mechanisms to process hybrid-type N-linked glycans.
J.Biol.Chem., 297, 2021
7OJT
DownloadVisualize
BU of 7ojt by Molmil
Crystal structure of unliganded PatA, a membrane associated acyltransferase from Mycobacterium smegmatis
Descriptor: GLYCEROL, Phosphatidylinositol mannoside acyltransferase
Authors:Anso, I, Wang, L, Marina, A, Paez-Perez, E.D, Perrone, S, Lowary, T.L, Trastoy, B, Guerin, M.E.
Deposit date:2021-05-17
Release date:2021-10-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.67 Å)
Cite:Molecular ruler mechanism and interfacial catalysis of the integral membrane acyltransferase PatA.
Sci Adv, 7, 2021
5MNI
DownloadVisualize
BU of 5mni by Molmil
Escherichia coli AGPase mutant R130A apo form
Descriptor: Glucose-1-phosphate adenylyltransferase
Authors:Cifuente, J.O, Comino, N, Marina, A, Orrantia, A, Eguskiza, A, Guerin, M.E.
Deposit date:2016-12-13
Release date:2017-03-01
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Mechanistic insights into the allosteric regulation of bacterial ADP-glucose pyrophosphorylases.
J. Biol. Chem., 292, 2017
5NRB
DownloadVisualize
BU of 5nrb by Molmil
A Native Ternary Complex of Alpha-1,3-Galactosyltransferase (a-3GalT) Supports a Conserved Reaction Mechanism for Retaining Glycosyltransferases - alpha-3GalT in complex with Co2+, UDP-Gal and lactose - a3GalT-Co2+-UDP-Gal-LAT-1
Descriptor: COBALT (II) ION, GALACTOSE-URIDINE-5'-DIPHOSPHATE, N-acetyllactosaminide alpha-1,3-galactosyltransferase, ...
Authors:Albesa-Jove, D, Marina, A, Sainz-Polo, M.A, Guerin, M.E.
Deposit date:2017-04-22
Release date:2017-10-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Structural Snapshots of alpha-1,3-Galactosyltransferase with Native Substrates: Insight into the Catalytic Mechanism of Retaining Glycosyltransferases.
Angew. Chem. Int. Ed. Engl., 56, 2017
5NRE
DownloadVisualize
BU of 5nre by Molmil
A Native Ternary Complex of Alpha-1,3-Galactosyltransferase (a3GalT) Supports a Conserved Reaction Mechanism for Retaining Glycosyltransferases - a3GalT in complex with lactose - a3GalT-LAT
Descriptor: N-acetyllactosaminide alpha-1,3-galactosyltransferase, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Albesa-Jove, D, Marina, A, Sainz-Polo, M.A, Guerin, M.E.
Deposit date:2017-04-22
Release date:2017-10-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structural Snapshots of alpha-1,3-Galactosyltransferase with Native Substrates: Insight into the Catalytic Mechanism of Retaining Glycosyltransferases.
Angew. Chem. Int. Ed. Engl., 56, 2017
5NR9
DownloadVisualize
BU of 5nr9 by Molmil
A Native Ternary Complex of Alpha-1,3-Galactosyltransferase (alpha-3GalT) Supports a Conserved Reaction Mechanism for Retaining Glycosyltransferases - Unliganded alpha-3GalT
Descriptor: GLYCEROL, N-acetyllactosaminide alpha-1,3-galactosyltransferase
Authors:Albesa-Jove, D, Marina, A, Sainz-Polo, M.A, Guerin, M.E.
Deposit date:2017-04-22
Release date:2017-10-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Snapshots of alpha-1,3-Galactosyltransferase with Native Substrates: Insight into the Catalytic Mechanism of Retaining Glycosyltransferases.
Angew. Chem. Int. Ed. Engl., 56, 2017
5NRD
DownloadVisualize
BU of 5nrd by Molmil
A Native Ternary Complex of Alpha-1,3-Galactosyltransferase (a-3GalT) Supports a Conserved Reaction Mechanism for Retaining Glycosyltransferases - alpha-3GalT in complex with Co2+, UDP-Gal and lactose - a3GalT-Co2+-UDP-Gal-LAT-2
Descriptor: COBALT (II) ION, GALACTOSE-URIDINE-5'-DIPHOSPHATE, GLYCEROL, ...
Authors:Albesa-Jove, D, Marina, A, Sainz-Polo, M.A, Guerin, M.E.
Deposit date:2017-04-22
Release date:2017-10-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Structural Snapshots of alpha-1,3-Galactosyltransferase with Native Substrates: Insight into the Catalytic Mechanism of Retaining Glycosyltransferases.
Angew. Chem. Int. Ed. Engl., 56, 2017
5OCE
DownloadVisualize
BU of 5oce by Molmil
THE MOLECULAR MECHANISM OF SUBSTRATE RECOGNITION AND CATALYSIS OF THE MEMBRANE ACYLTRANSFERASE PatA -- Complex of PatA with palmitate, mannose, and palmitoyl-6-mannose
Descriptor: PALMITIC ACID, Phosphatidylinositol mannoside acyltransferase, [(2~{R},3~{S},4~{S},5~{S},6~{S})-3,4,5,6-tetrakis(oxidanyl)oxan-2-yl]methyl hexadecanoate, ...
Authors:Albesa-Jove, D, Tersa, M, Guerin, M.E.
Deposit date:2017-06-30
Release date:2017-12-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:The Molecular Mechanism of Substrate Recognition and Catalysis of the Membrane Acyltransferase PatA from Mycobacteria.
ACS Chem. Biol., 13, 2018
7ZNZ
DownloadVisualize
BU of 7znz by Molmil
Crystal structure of unliganded form of FucOB, a GH95 family alpha-1,2-fucosidase from Akkermansia muciniphila
Descriptor: FucOB, a GH95 family alpha-1,2-fucosidase, GLYCEROL
Authors:Anso, I, Cifuente, J.O, Trastoy, B, Guerin, M.E.
Deposit date:2022-04-23
Release date:2023-04-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Turning universal O into rare Bombay type blood.
Nat Commun, 14, 2023
7ZO0
DownloadVisualize
BU of 7zo0 by Molmil
Crystal structure of catalytic inactive unliganded form of FucOB, a GH95 family alpha-1,2-fucosidase from Akkermansia muciniphila
Descriptor: GH95 family alpha-1,2-fucosidase, GLYCEROL
Authors:Anso, I, Cifuente, J.O, Trastoy, B, Guerin, M.E.
Deposit date:2022-04-23
Release date:2023-04-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Turning universal O into rare Bombay type blood.
Nat Commun, 14, 2023
8A0C
DownloadVisualize
BU of 8a0c by Molmil
Capsular polysaccharide synthesis multienzyme in complex with CMP
Descriptor: Bcs3, CYTIDINE-5'-MONOPHOSPHATE, GLYCEROL, ...
Authors:Cifuente, J.O, Schulze, J, Bethe, A, Di Domenico, V, Litschko, C, Budde, I, Eidenberger, L, Thiesler, H, Ramon-Roth, I, Berger, M, Claus, H, DAngelo, C, Marina, A, Gerardy-Schahn, R, Schubert, M, Guerin, M.E, Fiebig, T.
Deposit date:2022-05-27
Release date:2023-04-26
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A multi-enzyme machine polymerizes the Haemophilus influenzae type b capsule.
Nat.Chem.Biol., 19, 2023
8A0M
DownloadVisualize
BU of 8a0m by Molmil
Capsular polysaccharide synthesis multienzyme in complex with capsular polymer fragment
Descriptor: Bcs3, MAGNESIUM ION, beta-D-ribosyl-(1->1)-D-ribitol-5-phosphate
Authors:Cifuente, J.O, Schulze, J, Bethe, A, Di Domenico, V, Litschko, C, Budde, I, Eidenberger, L, Thiesler, H, Ramon-Roth, I, Berger, M, Claus, H, DAngelo, C, Marina, A, Gerardy-Schahn, R, Schubert, M, Guerin, M.E, Fiebig, T.
Deposit date:2022-05-29
Release date:2023-04-26
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:A multi-enzyme machine polymerizes the Haemophilus influenzae type b capsule.
Nat.Chem.Biol., 19, 2023
8A64
DownloadVisualize
BU of 8a64 by Molmil
cryoEM structure of the catalytically inactive EndoS from S. pyogenes in complex with the Fc region of immunoglobulin G1.
Descriptor: Endo-beta-N-acetylglucosaminidase F2, Immunoglobulin gamma-1 heavy chain, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Trastoy, B, Cifuente, J.O, Du, J.J, Sundberg, E.J, Guerin, M.E.
Deposit date:2022-06-16
Release date:2023-04-05
Last modified:2023-07-26
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Mechanism of antibody-specific deglycosylation and immune evasion by Streptococcal IgG-specific endoglycosidases.
Nat Commun, 14, 2023
6E58
DownloadVisualize
BU of 6e58 by Molmil
Crystal structure of Streptococcus pyogenes endo-beta-N-acetylglucosaminidase (EndoS2)
Descriptor: CALCIUM ION, Secreted Endo-beta-N-acetylglucosaminidase (EndoS)
Authors:Klontz, E.H, Trastoy, B, Gunther, S, Guerin, M.E, Sundberg, E.J.
Deposit date:2018-07-19
Release date:2019-02-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Molecular Basis of Broad SpectrumN-Glycan Specificity and Processing of Therapeutic IgG Monoclonal Antibodies by Endoglycosidase S2.
ACS Cent Sci, 5, 2019
6EN3
DownloadVisualize
BU of 6en3 by Molmil
Crystal structure of full length EndoS from Streptococcus pyogenes in complex with G2 oligosaccharide.
Descriptor: CALCIUM ION, Endo-beta-N-acetylglucosaminidase F2,Multifunctional-autoprocessing repeats-in-toxin, NICKEL (II) ION, ...
Authors:Trastoy, B, Klontz, E.H, Orwenyo, J, Marina, A, Wang, L.X, Sundberg, E.J, Guerin, M.E.
Deposit date:2017-10-04
Release date:2018-06-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.903 Å)
Cite:Structural basis for the recognition of complex-type N-glycans by Endoglycosidase S.
Nat Commun, 9, 2018
6R8B
DownloadVisualize
BU of 6r8b by Molmil
Escherichia coli AGPase in complex with FBP.
Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, Glucose-1-phosphate adenylyltransferase
Authors:Cifuente, J.O, Comino, N, D'Angelo, C, Marina, A, Gil-Carton, D, Albesa-Jove, D, Guerin, M.E.
Deposit date:2019-04-01
Release date:2020-02-05
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:The allosteric control mechanism of bacterial glycogen biosynthesis disclosed by cryoEM
Biorxiv, 2020
6R8U
DownloadVisualize
BU of 6r8u by Molmil
Escherichia coli AGPase in complex with AMP.
Descriptor: ADENOSINE MONOPHOSPHATE, Glucose-1-phosphate adenylyltransferase
Authors:Cifuente, J.O, Comino, N, D'Angelo, C, Marina, A, Gil-Carton, D, Albesa-Jove, D, Guerin, M.E.
Deposit date:2019-04-02
Release date:2020-02-05
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3 Å)
Cite:The allosteric control mechanism of bacterial glycogen biosynthesis disclosed by cryoEM
Biorxiv, 2020
6Z2Q
DownloadVisualize
BU of 6z2q by Molmil
Crystal structure of wild type OgpA from Akkermansia muciniphila in complex with an O-glycopeptide (GalGalNAc-TS) product
Descriptor: 1,2-ETHANEDIOL, ACETIC ACID, Glycodrosocin, ...
Authors:Trastoy, B, Naegali, A, Anso, I, Sjogren, J, Guerin, M.E.
Deposit date:2020-05-18
Release date:2020-09-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.347 Å)
Cite:Structural basis of mammalian mucin processing by the human gut O-glycopeptidase OgpA from Akkermansia muciniphila.
Nat Commun, 11, 2020

 

1234>

220472

PDB entries from 2024-05-29

PDB statisticsPDBj update infoContact PDBjnumon